Wall clock time and date at job start Mon Mar 30 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38670 * 120.41705 * 2 1 4 4 C 1.38628 * 118.42206 * 180.24106 * 3 2 1 5 5 C 1.38231 * 119.16056 * 359.74989 * 4 3 2 6 6 N 1.31865 * 120.76114 * 0.02562 * 5 4 3 7 7 C 1.31882 * 121.72591 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.61677 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.46886 * 89.99893 * 8 7 6 10 10 C 1.46899 * 110.99495 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47039 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.46722 * 304.99519 * 11 10 9 13 13 C 1.53002 * 109.47082 * 64.99745 * 11 10 9 14 14 C 1.53002 * 109.47358 * 184.99616 * 11 10 9 15 15 C 1.50696 * 109.46919 * 174.99744 * 14 11 10 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 H 1.08996 * 109.47407 * 270.25456 * 1 2 3 24 24 H 1.09002 * 109.46935 * 30.25785 * 1 2 3 25 25 H 1.09008 * 109.46999 * 150.24978 * 1 2 3 26 26 H 1.08001 * 120.79099 * 0.02562 * 3 2 1 27 27 H 1.07998 * 120.42359 * 179.72962 * 4 3 2 28 28 H 1.07996 * 119.62111 * 180.02562 * 5 4 3 29 29 H 1.09003 * 109.47189 * 329.99701 * 8 7 6 30 30 H 1.09000 * 109.47286 * 209.99441 * 8 7 6 31 31 H 1.00896 * 110.99778 * 56.04796 * 9 8 7 32 32 H 1.08995 * 109.48028 * 59.99869 * 10 9 8 33 33 H 1.09001 * 109.47280 * 299.99463 * 10 9 8 34 34 H 1.09000 * 109.47048 * 180.02562 * 13 11 10 35 35 H 1.09001 * 109.46743 * 300.00081 * 13 11 10 36 36 H 1.08994 * 109.47199 * 60.00238 * 13 11 10 37 37 H 1.09000 * 109.46497 * 55.00010 * 14 11 10 38 38 H 1.08999 * 109.46623 * 295.00074 * 14 11 10 39 39 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1476 -0.0051 5 6 4.2257 -0.0822 -0.0048 6 7 3.5255 -1.1996 -0.0001 7 6 2.2067 -1.1916 0.0038 8 6 1.4540 -2.4972 0.0084 9 7 1.2136 -2.9189 1.3950 10 6 0.4809 -4.1913 1.4386 11 6 0.2493 -4.5967 2.8957 12 1 1.2041 -4.6269 3.4206 13 6 -0.6709 -3.5764 3.5689 14 6 -0.4025 -5.9802 2.9428 15 6 -0.5184 -6.4323 4.3756 16 1 -0.1625 -5.7967 5.1729 17 6 -1.0780 -7.6579 4.6686 18 7 -1.5056 -8.4346 3.6973 19 14 -1.2211 -8.2187 6.4447 20 1 -2.5222 -7.7697 7.0022 21 1 -1.1421 -9.7004 6.5039 22 1 -0.1129 -7.6318 7.2400 23 1 -0.3634 0.0046 1.0276 24 1 -0.3633 0.8877 -0.5178 25 1 -0.3633 -0.8923 -0.5100 26 1 1.6889 2.1423 0.0004 27 1 4.1735 2.0593 -0.0097 28 1 5.3046 -0.1285 -0.0083 29 1 2.0420 -3.2574 -0.5058 30 1 0.4999 -2.3684 -0.5027 31 1 0.7258 -2.2024 1.9114 32 1 1.0624 -4.9631 0.9345 33 1 -0.4799 -4.0747 0.9373 34 1 -0.8355 -3.8649 4.6070 35 1 -0.2065 -2.5908 3.5353 36 1 -1.6256 -3.5463 3.0440 37 1 0.2102 -6.6895 2.3864 38 1 -1.3955 -5.9293 2.4962 39 1 -1.4310 -8.1436 2.7750 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309804175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:02 Heat of formation + Delta-G solvation = -12.047490 kcal Electronic energy + Delta-G solvation = -17476.874329 eV Core-core repulsion = 14803.360563 eV Total energy + Delta-G solvation = -2673.513765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.32048 -38.57826 -36.16991 -34.63493 -34.14496 -32.43566 -28.89896 -28.31482 -27.59083 -26.00972 -24.19939 -23.43150 -22.38393 -20.95155 -18.88966 -17.85419 -17.67138 -16.57730 -16.21489 -15.87939 -15.64500 -15.48307 -15.05860 -14.81861 -14.48978 -14.01458 -13.85500 -13.65924 -13.54609 -13.36357 -13.23517 -13.00054 -12.79355 -12.53449 -12.24352 -11.94898 -11.86460 -11.61287 -11.33377 -10.67880 -10.58279 -10.51726 -10.31719 -9.79632 -9.41087 -8.65126 -6.33968 0.12657 0.36887 1.52398 1.62040 1.79538 2.57743 2.72037 3.19097 3.24098 3.45326 3.77934 3.92649 3.96134 4.09982 4.12015 4.12620 4.31679 4.42676 4.52040 4.59677 4.64693 4.71786 4.76252 4.77419 4.83416 4.90583 5.01953 5.16192 5.21800 5.23998 5.30443 5.33065 5.47185 5.62043 5.80343 5.93349 6.08649 6.22887 6.37889 6.62902 7.11252 7.46713 8.75749 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.044099 B = 0.003653 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.784811 B = 7663.948988 C = 7730.239409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.137 4.137 3 C -0.081 4.081 4 C -0.165 4.165 5 C 0.074 3.926 6 N -0.504 5.504 7 C 0.109 3.891 8 C 0.106 3.894 9 N -0.683 5.683 10 C 0.079 3.921 11 C -0.070 4.070 12 H 0.050 0.950 13 C -0.125 4.125 14 C 0.017 3.983 15 C -0.605 4.605 16 H 0.051 0.949 17 C -0.043 4.043 18 N -0.942 5.942 19 Si 1.119 2.881 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.271 1.271 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.172 0.828 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.344 0.656 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.046 0.954 37 H -0.018 1.018 38 H -0.009 1.009 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 22.877 -8.481 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.139 4.139 3 C -0.107 4.107 4 C -0.184 4.184 5 C -0.083 4.083 6 N -0.213 5.213 7 C -0.028 4.028 8 C -0.023 4.023 9 N -0.316 5.316 10 C -0.050 4.050 11 C -0.089 4.089 12 H 0.068 0.932 13 C -0.182 4.182 14 C -0.020 4.020 15 C -0.643 4.643 16 H 0.069 0.931 17 C -0.239 4.239 18 N -0.580 5.580 19 Si 0.940 3.060 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.196 1.196 23 H 0.097 0.903 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.182 0.818 27 H 0.184 0.816 28 H 0.189 0.811 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.163 0.837 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.000 1.000 38 H 0.009 0.991 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.427 20.543 -7.473 22.785 hybrid contribution -0.598 1.751 -1.467 2.362 sum 5.828 22.294 -8.940 24.717 Atomic orbital electron populations 1.20898 0.88945 1.04108 1.03372 1.21010 0.98622 0.93489 1.00805 1.21882 0.94508 0.98576 0.95694 1.22510 0.95612 1.00074 1.00232 1.23212 1.01331 0.87865 0.95929 1.67427 1.08576 1.33283 1.12034 1.21000 0.89874 0.94687 0.97288 1.20799 0.98109 0.92983 0.90383 1.60401 1.53062 1.05412 1.12726 1.21861 0.95479 0.91147 0.96544 1.20906 0.98312 0.95130 0.94572 0.93188 1.21628 0.98412 0.97616 1.00532 1.19170 0.93761 0.93059 0.96027 1.22456 1.43029 1.05335 0.93513 0.93078 1.27404 0.93064 0.94033 1.09432 1.70884 1.46731 1.39606 1.00774 0.82915 0.77575 0.75852 0.69655 1.19638 1.20990 1.19565 0.90320 0.89090 0.91294 0.81841 0.81560 0.81085 0.91031 0.91694 0.83654 0.92541 0.94794 0.93674 0.91639 0.93492 0.99988 0.99106 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.62 71.24 0.69 -1.03 16 2 C -0.14 -2.67 5.90 -19.77 -0.12 -2.78 16 3 C -0.08 -1.23 9.86 22.47 0.22 -1.01 16 4 C -0.16 -2.46 10.11 22.36 0.23 -2.23 16 5 C 0.07 1.51 11.18 84.69 0.95 2.45 16 6 N -0.50 -14.01 10.27 -183.88 -1.89 -15.90 16 7 C 0.11 2.80 6.29 42.54 0.27 3.07 16 8 C 0.11 2.86 5.57 85.55 0.48 3.34 16 9 N -0.68 -21.00 6.49 -517.92 -3.36 -24.36 16 10 C 0.08 2.79 5.14 86.30 0.44 3.23 16 11 C -0.07 -2.97 2.55 -10.79 -0.03 -3.00 16 12 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.12 -4.61 8.77 71.98 0.63 -3.98 16 14 C 0.02 0.92 3.76 29.85 0.11 1.04 16 15 C -0.61 -35.21 8.41 25.60 0.22 -35.00 16 16 H 0.05 2.91 7.06 -2.91 -0.02 2.89 16 17 C -0.04 -2.53 5.46 84.66 0.46 -2.07 16 18 N -0.94 -59.80 13.65 21.45 0.29 -59.50 16 19 Si 1.12 51.56 29.90 68.60 2.05 53.61 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 25 H 0.07 1.08 5.95 -2.38 -0.01 1.06 16 26 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 27 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 28 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 1.49 5.93 -2.39 -0.01 1.47 16 31 H 0.34 9.64 6.98 -89.70 -0.63 9.01 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.83 6.95 -2.39 -0.02 1.81 16 35 H 0.06 1.98 6.68 -2.39 -0.02 1.96 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H -0.02 -1.05 8.00 -2.39 -0.02 -1.06 16 38 H -0.01 -0.52 8.01 -2.39 -0.02 -0.54 16 39 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 Total: -1.00 -71.64 318.18 2.14 -69.50 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.50 Total: 14.61 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 4.55 Total: -37.96 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -4.96 Total: -99.76 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -71.64 2.14 -69.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309804175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.454 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds