Wall clock time and date at job start Mon Mar 30 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47168 * 2 1 4 4 C 1.52996 * 109.47379 * 60.00249 * 3 2 1 5 5 C 1.53006 * 109.47343 * 300.00417 * 3 2 1 6 6 C 1.52999 * 109.47460 * 180.02562 * 3 2 1 7 7 N 1.46495 * 109.47689 * 180.02562 * 6 3 2 8 8 C 1.39248 * 120.00206 * 179.97438 * 7 6 3 9 9 C 1.39712 * 120.78534 * 359.97438 * 8 7 6 10 10 C 1.38447 * 119.47508 * 180.02562 * 9 8 7 11 11 N 1.31531 * 121.10314 * 0.02562 * 10 9 8 12 12 C 1.33694 * 121.70245 * 359.68780 * 11 10 9 13 13 C 1.41457 * 119.79882 * 180.30448 * 12 11 10 14 14 H 1.08004 * 120.00251 * 180.26543 * 13 12 11 15 15 C 1.40018 * 120.00032 * 0.27156 * 13 12 11 16 16 N 1.30746 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00045 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47033 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47065 * 119.99769 * 17 15 13 20 20 H 1.48497 * 109.46811 * 239.99831 * 17 15 13 21 21 C 1.39027 * 120.78183 * 180.02562 * 8 7 6 22 22 H 1.08999 * 109.47010 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46684 * 299.99670 * 1 2 3 24 24 H 1.08998 * 109.46907 * 59.99987 * 1 2 3 25 25 H 1.08998 * 109.46684 * 240.00330 * 2 1 3 26 26 H 1.08996 * 109.47293 * 120.00672 * 2 1 3 27 27 H 1.08999 * 109.47914 * 179.97438 * 4 3 2 28 28 H 1.09005 * 109.47087 * 299.99884 * 4 3 2 29 29 H 1.09004 * 109.46864 * 59.99651 * 4 3 2 30 30 H 1.09004 * 109.46733 * 300.00038 * 5 3 2 31 31 H 1.08999 * 109.47058 * 59.99652 * 5 3 2 32 32 H 1.08994 * 109.47198 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.47099 * 59.99666 * 6 3 2 34 34 H 1.09004 * 109.46678 * 300.00284 * 6 3 2 35 35 H 0.97008 * 119.99671 * 359.97438 * 7 6 3 36 36 H 1.08000 * 120.26325 * 0.02562 * 9 8 7 37 37 H 1.07998 * 119.44697 * 180.02562 * 10 9 8 38 38 H 0.96994 * 120.00265 * 180.02562 * 16 15 13 39 39 H 1.08002 * 120.55759 * 359.94863 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5300 2.1638 -1.2492 6 6 3.5700 1.4425 -0.0006 7 7 4.0584 2.8237 0.0000 8 6 5.4274 3.0781 0.0001 9 6 6.3498 2.0287 0.0002 10 6 7.7048 2.3127 0.0008 11 7 8.1388 3.5544 0.0019 12 6 7.2968 4.5929 -0.0038 13 6 7.8077 5.9120 -0.0090 14 1 7.1305 6.7534 -0.0092 15 6 9.1913 6.1269 -0.0138 16 7 10.0110 5.1084 -0.0131 17 14 9.8658 7.8689 -0.0213 18 1 8.7390 8.8360 -0.0216 19 1 10.7010 8.0814 1.1880 20 1 10.6937 8.0737 -1.2369 21 6 5.9087 4.3824 0.0012 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8938 3.1912 1.2495 28 1 0.4401 2.1637 1.2493 29 1 1.8935 1.6498 2.1392 30 1 1.8933 1.6499 -2.1392 31 1 0.4400 2.1638 -1.2492 32 1 1.8937 3.1913 -1.2494 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.4280 3.5610 0.0003 36 1 6.0085 1.0040 -0.0003 37 1 8.4174 1.5012 0.0004 38 1 10.9695 5.2572 -0.0160 39 1 5.2263 5.2195 0.0012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309983644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:14 Heat of formation + Delta-G solvation = 13.204367 kcal Electronic energy + Delta-G solvation = -17806.756437 eV Core-core repulsion = 15134.337674 eV Total energy + Delta-G solvation = -2672.418763 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.89132 -37.72860 -34.59330 -33.13944 -30.55849 -29.81567 -28.30336 -27.32406 -26.35294 -25.35127 -23.04628 -21.52313 -20.41898 -18.55968 -17.57031 -15.84937 -15.59667 -15.00196 -14.76695 -14.34374 -14.14505 -14.07341 -13.61883 -13.07248 -12.82616 -12.59499 -12.25710 -12.15125 -11.96101 -11.91133 -11.74710 -11.22794 -11.13808 -11.12316 -10.67563 -10.61389 -10.50440 -10.48346 -10.25087 -9.66665 -9.64300 -9.05355 -7.50758 -7.39866 -6.58353 -6.26965 -4.41770 2.87508 3.14847 3.19313 3.24279 3.43438 4.02048 4.18671 4.71755 4.75470 4.79753 4.89354 5.17439 5.29450 5.37439 5.54464 5.64610 5.76544 5.80631 5.84540 5.91486 6.01732 6.03597 6.04343 6.13480 6.14865 6.21204 6.38216 6.38961 6.54568 6.78535 7.00105 7.18539 7.28441 7.59430 7.70393 7.77693 8.34665 8.48756 8.57586 8.86421 9.10923 10.31146 10.47077 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.048360 B = 0.004271 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.847999 B = 6554.639070 C = 6931.813551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.076 4.076 4 C -0.142 4.142 5 C -0.142 4.142 6 C 0.146 3.854 7 N -0.752 5.752 8 C 0.256 3.744 9 C -0.371 4.371 10 C 0.148 3.852 11 N -0.508 5.508 12 C 0.283 3.717 13 C -0.437 4.437 14 H 0.080 0.920 15 C 0.071 3.929 16 N -0.717 5.717 17 Si 0.904 3.096 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.347 4.347 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.388 0.612 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.270 0.730 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 -6.234 0.001 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.076 4.076 4 C -0.199 4.199 5 C -0.199 4.199 6 C 0.021 3.979 7 N -0.386 5.386 8 C 0.150 3.850 9 C -0.399 4.399 10 C -0.018 4.018 11 N -0.222 5.222 12 C 0.158 3.842 13 C -0.468 4.468 14 H 0.098 0.902 15 C -0.154 4.154 16 N -0.338 5.338 17 Si 0.729 3.271 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.374 4.374 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.223 0.777 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.660 -6.263 0.004 14.124 hybrid contribution -0.841 0.751 -0.007 1.128 sum -13.501 -5.511 -0.004 14.583 Atomic orbital electron populations 1.21873 0.95900 1.01303 1.02049 1.21497 0.95883 0.95391 1.02152 1.20785 0.94947 0.95791 0.96105 1.21900 1.00507 1.00576 0.96903 1.21902 1.00506 1.00577 0.96905 1.21108 0.91459 0.84971 1.00388 1.44399 1.03926 1.05565 1.84736 1.17660 0.82319 0.93760 0.91271 1.20840 0.94413 0.96056 1.28560 1.22283 0.91775 0.95160 0.92625 1.68755 1.36614 0.97078 1.19743 1.18334 0.86646 0.92743 0.86443 1.19601 0.91683 0.91820 1.43707 0.90160 1.26059 0.97446 0.98297 0.93577 1.70172 1.03335 1.31058 1.29279 0.86337 0.79516 0.82847 0.78449 1.18521 1.19922 1.19928 1.21144 0.96760 0.93087 1.26386 0.93051 0.92462 0.92467 0.91847 0.91845 0.92472 0.92551 0.92612 0.92612 0.92553 0.92472 0.93200 0.93208 0.77730 0.89157 0.86740 0.91915 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.21 37.16 0.34 -0.93 16 2 C -0.11 -1.08 4.99 -26.73 -0.13 -1.21 16 3 C -0.08 -0.86 0.56 -154.51 -0.09 -0.94 16 4 C -0.14 -1.55 7.95 37.16 0.30 -1.26 16 5 C -0.14 -1.55 7.95 37.16 0.30 -1.26 16 6 C 0.15 2.16 3.83 -4.05 -0.02 2.15 16 7 N -0.75 -13.48 5.12 -58.50 -0.30 -13.78 16 8 C 0.26 5.87 6.69 -83.65 -0.56 5.31 16 9 C -0.37 -8.65 9.40 -38.95 -0.37 -9.02 16 10 C 0.15 3.77 11.17 -17.60 -0.20 3.57 16 11 N -0.51 -14.61 7.86 -11.21 -0.09 -14.70 16 12 C 0.28 8.07 6.55 -85.02 -0.56 7.52 16 13 C -0.44 -12.19 9.14 -37.69 -0.34 -12.53 16 14 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 15 C 0.07 1.88 5.50 -17.35 -0.10 1.78 16 16 N -0.72 -19.79 11.46 55.55 0.64 -19.16 16 17 Si 0.90 19.17 29.56 -169.99 -5.02 14.15 16 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 C -0.35 -8.88 9.72 -38.48 -0.37 -9.25 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 24 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.68 6.86 -51.93 -0.36 0.32 16 28 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 32 H 0.06 0.68 6.86 -51.93 -0.36 0.32 16 33 H 0.05 0.77 7.99 -51.93 -0.41 0.36 16 34 H 0.05 0.77 7.99 -51.93 -0.41 0.36 16 35 H 0.39 6.40 6.19 -40.82 -0.25 6.15 16 36 H 0.09 1.89 6.87 -52.49 -0.36 1.53 16 37 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 38 H 0.27 6.71 8.29 -40.82 -0.34 6.37 16 39 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -30.16 309.41 -7.90 -38.06 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.00 Total: 6.83 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.79 Total: -16.07 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.25 Total: -47.63 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.16 -7.90 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309983644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.268 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds