Wall clock time and date at job start Mon Mar 30 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47168 * 2 1 4 4 C 1.52996 * 109.47379 * 60.00249 * 3 2 1 5 5 C 1.53006 * 109.47343 * 300.00417 * 3 2 1 6 6 C 1.52999 * 109.47460 * 180.02562 * 3 2 1 7 7 N 1.46495 * 109.47689 * 180.02562 * 6 3 2 8 8 C 1.39248 * 120.00206 * 179.97438 * 7 6 3 9 9 C 1.39712 * 120.78534 * 359.97438 * 8 7 6 10 10 C 1.38447 * 119.47508 * 180.02562 * 9 8 7 11 11 N 1.31531 * 121.10314 * 0.02562 * 10 9 8 12 12 C 1.33694 * 121.70245 * 359.68780 * 11 10 9 13 13 C 1.41457 * 119.79882 * 180.30448 * 12 11 10 14 14 H 1.08004 * 120.00251 * 180.26543 * 13 12 11 15 15 C 1.40018 * 120.00032 * 0.27156 * 13 12 11 16 16 N 1.30746 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00045 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47033 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47065 * 119.99769 * 17 15 13 20 20 H 1.48497 * 109.46811 * 239.99831 * 17 15 13 21 21 C 1.39027 * 120.78183 * 180.02562 * 8 7 6 22 22 H 1.08999 * 109.47010 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46684 * 299.99670 * 1 2 3 24 24 H 1.08998 * 109.46907 * 59.99987 * 1 2 3 25 25 H 1.08998 * 109.46684 * 240.00330 * 2 1 3 26 26 H 1.08996 * 109.47293 * 120.00672 * 2 1 3 27 27 H 1.08999 * 109.47914 * 179.97438 * 4 3 2 28 28 H 1.09005 * 109.47087 * 299.99884 * 4 3 2 29 29 H 1.09004 * 109.46864 * 59.99651 * 4 3 2 30 30 H 1.09004 * 109.46733 * 300.00038 * 5 3 2 31 31 H 1.08999 * 109.47058 * 59.99652 * 5 3 2 32 32 H 1.08994 * 109.47198 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.47099 * 59.99666 * 6 3 2 34 34 H 1.09004 * 109.46678 * 300.00284 * 6 3 2 35 35 H 0.97008 * 119.99671 * 359.97438 * 7 6 3 36 36 H 1.08000 * 120.26325 * 0.02562 * 9 8 7 37 37 H 1.07998 * 119.44697 * 180.02562 * 10 9 8 38 38 H 0.96994 * 120.00265 * 180.02562 * 16 15 13 39 39 H 1.08002 * 120.55759 * 359.94863 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5300 2.1638 -1.2492 6 6 3.5700 1.4425 -0.0006 7 7 4.0584 2.8237 0.0000 8 6 5.4274 3.0781 0.0001 9 6 6.3498 2.0287 0.0002 10 6 7.7048 2.3127 0.0008 11 7 8.1388 3.5544 0.0019 12 6 7.2968 4.5929 -0.0038 13 6 7.8077 5.9120 -0.0090 14 1 7.1305 6.7534 -0.0092 15 6 9.1913 6.1269 -0.0138 16 7 10.0110 5.1084 -0.0131 17 14 9.8658 7.8689 -0.0213 18 1 8.7390 8.8360 -0.0216 19 1 10.7010 8.0814 1.1880 20 1 10.6937 8.0737 -1.2369 21 6 5.9087 4.3824 0.0012 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8938 3.1912 1.2495 28 1 0.4401 2.1637 1.2493 29 1 1.8935 1.6498 2.1392 30 1 1.8933 1.6499 -2.1392 31 1 0.4400 2.1638 -1.2492 32 1 1.8937 3.1913 -1.2494 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.4280 3.5610 0.0003 36 1 6.0085 1.0040 -0.0003 37 1 8.4174 1.5012 0.0004 38 1 10.9695 5.2572 -0.0160 39 1 5.2263 5.2195 0.0012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309983644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:14 Heat of formation + Delta-G solvation = -4.077787 kcal Electronic energy + Delta-G solvation = -17807.505847 eV Core-core repulsion = 15134.337674 eV Total energy + Delta-G solvation = -2673.168173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.35459 -39.22658 -36.19149 -35.00503 -31.89578 -31.58967 -29.73997 -28.20454 -27.93814 -26.95417 -24.13159 -23.43636 -22.20157 -19.64104 -19.30972 -17.57998 -17.19234 -16.43133 -15.95394 -15.94197 -15.55537 -15.15512 -15.12075 -14.54036 -14.30158 -14.10095 -13.99465 -13.28510 -12.99971 -12.97912 -12.83198 -12.77506 -12.69257 -12.58358 -12.10190 -12.05303 -11.63378 -11.50027 -11.42267 -11.31782 -11.29294 -10.91921 -9.52462 -9.40742 -8.31552 -8.22765 -6.48960 0.97897 1.40999 1.41454 1.57365 1.60075 2.25557 2.72721 2.91915 3.73828 3.86059 3.90189 4.06295 4.29510 4.41233 4.41532 4.61323 4.67036 4.73531 4.73657 4.77134 4.86771 4.86889 5.03949 5.05070 5.11110 5.13842 5.17278 5.22416 5.24238 5.28363 5.44521 5.51576 5.59090 5.72407 5.73681 5.90092 6.31509 6.63605 6.85755 7.00343 7.13260 8.33343 8.52630 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.048360 B = 0.004271 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.847999 B = 6554.639070 C = 6931.813551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.067 4.067 4 C -0.141 4.141 5 C -0.141 4.141 6 C 0.142 3.858 7 N -0.738 5.738 8 C 0.263 3.737 9 C -0.367 4.367 10 C 0.131 3.869 11 N -0.547 5.547 12 C 0.251 3.749 13 C -0.475 4.475 14 H 0.083 0.917 15 C 0.024 3.976 16 N -0.758 5.758 17 Si 0.988 3.012 18 H -0.255 1.255 19 H -0.265 1.265 20 H -0.265 1.265 21 C -0.370 4.370 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.396 0.604 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.277 0.723 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.413 -6.505 -0.003 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.068 4.068 4 C -0.198 4.198 5 C -0.198 4.198 6 C 0.017 3.983 7 N -0.371 5.371 8 C 0.154 3.846 9 C -0.395 4.395 10 C -0.034 4.034 11 N -0.263 5.263 12 C 0.127 3.873 13 C -0.506 4.506 14 H 0.101 0.899 15 C -0.197 4.197 16 N -0.380 5.380 17 Si 0.808 3.192 18 H -0.179 1.179 19 H -0.190 1.190 20 H -0.190 1.190 21 C -0.397 4.397 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.232 0.768 36 H 0.135 0.865 37 H 0.153 0.847 38 H 0.088 0.912 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.345 -6.570 0.000 15.778 hybrid contribution -0.465 0.675 -0.006 0.820 sum -14.810 -5.895 -0.006 15.940 Atomic orbital electron populations 1.21854 0.94450 1.02152 1.02389 1.21488 0.97083 0.93851 1.02307 1.20733 0.92165 0.97306 0.96563 1.21902 1.01837 0.99604 0.96465 1.21903 1.01835 0.99605 0.96467 1.21332 0.94132 0.82777 1.00011 1.44471 1.02098 1.07524 1.82980 1.17728 0.84548 0.92793 0.89543 1.21081 0.93766 0.97451 1.27198 1.22726 0.93386 0.94894 0.92441 1.68703 1.37741 0.98177 1.21636 1.18773 0.88047 0.93320 0.87200 1.19959 0.93063 0.92007 1.45584 0.89872 1.27013 0.97087 1.03183 0.92422 1.70269 1.03948 1.33734 1.30014 0.85088 0.78710 0.76562 0.78834 1.17885 1.19001 1.19009 1.21233 0.96094 0.94577 1.27805 0.92055 0.92096 0.92102 0.91747 0.91744 0.93719 0.90517 0.92918 0.92918 0.90519 0.93719 0.93479 0.93488 0.76788 0.86450 0.84731 0.91217 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.21 71.98 0.66 -1.34 16 2 C -0.11 -1.82 4.99 30.59 0.15 -1.67 16 3 C -0.07 -1.37 0.56 -52.18 -0.03 -1.40 16 4 C -0.14 -2.77 7.95 71.98 0.57 -2.20 16 5 C -0.14 -2.77 7.95 71.98 0.57 -2.20 16 6 C 0.14 3.95 3.83 86.38 0.33 4.28 16 7 N -0.74 -25.66 5.12 -339.00 -1.74 -27.40 16 8 C 0.26 12.01 6.69 38.51 0.26 12.27 16 9 C -0.37 -16.92 9.40 22.68 0.21 -16.71 16 10 C 0.13 6.71 11.17 84.79 0.95 7.66 16 11 N -0.55 -32.42 7.86 -189.38 -1.49 -33.91 16 12 C 0.25 14.82 6.55 40.18 0.26 15.08 16 13 C -0.47 -27.33 9.14 23.49 0.21 -27.12 16 14 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 15 C 0.02 1.29 5.50 85.29 0.47 1.76 16 16 N -0.76 -42.88 11.46 21.84 0.25 -42.63 16 17 Si 0.99 39.79 29.56 68.60 2.03 41.81 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 19 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 21 C -0.37 -19.35 9.72 22.99 0.22 -19.12 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.06 0.77 6.43 -2.39 -0.02 0.75 16 24 H 0.06 0.77 6.43 -2.39 -0.02 0.75 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.99 6.86 -2.39 -0.02 0.97 16 28 H 0.08 1.21 6.43 -2.38 -0.02 1.19 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.21 6.43 -2.39 -0.02 1.19 16 32 H 0.04 0.99 6.86 -2.39 -0.02 0.97 16 33 H 0.05 1.37 7.99 -2.39 -0.02 1.35 16 34 H 0.05 1.37 7.99 -2.39 -0.02 1.35 16 35 H 0.40 12.68 6.19 -92.70 -0.57 12.10 16 36 H 0.12 4.69 6.87 -2.91 -0.02 4.67 16 37 H 0.14 6.11 8.06 -2.91 -0.02 6.09 16 38 H 0.28 14.08 8.29 -92.71 -0.77 13.31 16 39 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -66.52 309.41 4.36 -62.16 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.46 Total: 30.67 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.85 Total: -30.70 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -2.98 Total: -103.94 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.81 kcal Total: -66.52 4.36 -62.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309983644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.079 kcal (2) G-P(sol) polarization free energy of solvation -66.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds