Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 H 1.09001 * 109.47124 * 54.79546 * 3 2 1 5 5 N 1.46507 * 109.46944 * 294.79679 * 3 2 1 6 6 C 1.38820 * 119.99525 * 157.50452 * 5 3 2 7 7 C 1.39792 * 119.59115 * 355.00567 * 6 5 3 8 8 C 1.38592 * 119.49507 * 179.78769 * 7 6 5 9 9 C 1.38398 * 118.67747 * 0.48338 * 8 7 6 10 10 C 1.40548 * 119.14671 * 359.74329 * 9 8 7 11 11 C 1.41321 * 119.78251 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99968 * 7.24514 * 11 10 9 13 13 C 1.40026 * 120.00312 * 187.24197 * 11 10 9 14 14 N 1.30742 * 119.99564 * 7.20255 * 13 11 10 15 15 Si 1.86796 * 120.00125 * 187.20296 * 13 11 10 16 16 H 1.48505 * 109.47083 * 94.98964 * 15 13 11 17 17 H 1.48496 * 109.46968 * 214.98894 * 15 13 11 18 18 H 1.48497 * 109.47060 * 334.99063 * 15 13 11 19 19 N 1.31961 * 119.57999 * 175.28282 * 6 5 3 20 20 C 1.52998 * 109.47271 * 174.79549 * 3 2 1 21 21 C 1.53004 * 109.46945 * 299.99927 * 20 3 2 22 22 C 1.53001 * 109.47070 * 59.99723 * 20 3 2 23 23 H 1.09007 * 109.47248 * 55.39301 * 1 2 3 24 24 H 1.08997 * 109.47294 * 295.39836 * 1 2 3 25 25 H 1.08995 * 109.47196 * 175.39261 * 1 2 3 26 26 H 1.08994 * 109.47016 * 119.99557 * 2 1 3 27 27 H 1.09001 * 109.47129 * 239.99711 * 2 1 3 28 28 H 0.97000 * 119.99899 * 337.50001 * 5 3 2 29 29 H 1.08007 * 120.24971 * 359.97438 * 7 6 5 30 30 H 1.08000 * 120.66298 * 180.22469 * 8 7 6 31 31 H 1.08001 * 120.42100 * 179.76716 * 9 8 7 32 32 H 0.96997 * 120.00065 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.47267 * 179.97438 * 20 3 2 34 34 H 1.09004 * 109.46845 * 59.99856 * 21 20 3 35 35 H 1.09000 * 109.47095 * 179.97438 * 21 20 3 36 36 H 1.09001 * 109.47267 * 299.99891 * 21 20 3 37 37 H 1.09000 * 109.47007 * 180.02562 * 22 20 3 38 38 H 1.08995 * 109.47288 * 300.00248 * 22 20 3 39 39 H 1.08998 * 109.47041 * 60.00522 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9826 0.8397 5 7 1.6566 2.0960 -1.2539 6 6 1.5768 3.4804 -1.3189 7 6 1.7611 4.2377 -0.1584 8 6 1.6853 5.6199 -0.2264 9 6 1.4175 6.2110 -1.4488 10 6 1.2370 5.3951 -2.5789 11 6 0.9635 5.9846 -3.8338 12 1 1.0092 7.0576 -3.9478 13 6 0.6334 5.1775 -4.9294 14 7 0.4400 3.8954 -4.7621 15 14 0.4694 5.9328 -6.6300 16 1 1.7535 5.7884 -7.3617 17 1 -0.6079 5.2370 -7.3787 18 1 0.1321 7.3732 -6.5015 19 7 1.3224 4.0647 -2.4744 20 6 3.5644 1.4445 0.1308 21 6 3.9647 0.7621 1.4404 22 6 4.1784 0.6864 -1.0478 23 1 -0.3634 0.5837 -0.8459 24 1 -0.3634 0.4408 0.9283 25 1 -0.3633 -1.0243 -0.0825 26 1 1.8933 -0.5137 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.4586 1.5614 -2.0387 29 1 1.9639 3.7495 0.7834 30 1 1.8282 6.2235 0.6577 31 1 1.3486 7.2855 -1.5332 32 1 0.2110 3.3363 -5.5209 33 1 3.9278 2.4721 0.1304 34 1 3.6013 -0.2656 1.4404 35 1 5.0508 0.7631 1.5334 36 1 3.5273 1.3021 2.2801 37 1 5.2644 0.6875 -0.9543 38 1 3.8151 -0.3412 -1.0478 39 1 3.8933 1.1727 -1.9807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310037600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = 16.800782 kcal Electronic energy + Delta-G solvation = -18438.057709 eV Core-core repulsion = 15765.794899 eV Total energy + Delta-G solvation = -2672.262810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.79457 -37.26063 -33.73780 -32.77220 -31.86426 -30.26171 -28.53422 -26.94284 -25.36029 -25.17772 -22.38647 -21.26066 -20.64689 -18.72834 -17.25170 -16.31211 -15.16261 -15.02539 -14.76946 -14.38528 -14.06120 -13.62859 -13.37029 -13.05625 -12.59083 -12.29369 -12.13311 -12.00009 -11.84837 -11.59176 -11.29831 -11.23518 -10.95999 -10.74425 -10.72097 -10.63523 -10.49057 -10.29465 -9.98849 -9.84224 -9.38081 -8.77860 -7.87049 -7.43503 -6.46508 -6.29121 -4.41026 2.91184 3.13596 3.17095 3.29368 3.34585 4.01690 4.28111 4.86635 4.97669 5.12095 5.32236 5.36859 5.45923 5.57990 5.78515 5.87449 5.93135 6.00848 6.05656 6.09127 6.14597 6.17664 6.23196 6.36416 6.39604 6.53242 6.57382 6.67133 6.73339 6.92542 6.95800 7.03660 7.29841 7.66787 7.87922 7.99168 8.23195 8.44619 8.76978 8.86188 9.18776 10.29204 10.45183 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.006289 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.515183 B = 4451.040740 C = 4851.939604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.171 3.829 4 H 0.072 0.928 5 N -0.729 5.729 6 C 0.415 3.585 7 C -0.366 4.366 8 C -0.032 4.032 9 C -0.319 4.319 10 C 0.296 3.704 11 C -0.439 4.439 12 H 0.082 0.918 13 C 0.075 3.925 14 N -0.720 5.720 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.262 1.262 19 N -0.535 5.535 20 C -0.114 4.114 21 C -0.145 4.145 22 C -0.142 4.142 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.393 0.607 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.270 0.730 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -7.729 6.469 10.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.064 3.936 4 H 0.090 0.910 5 N -0.364 5.364 6 C 0.175 3.825 7 C -0.392 4.392 8 C -0.057 4.057 9 C -0.342 4.342 10 C 0.169 3.831 11 C -0.471 4.471 12 H 0.100 0.900 13 C -0.150 4.150 14 N -0.341 5.341 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.186 1.186 19 N -0.257 5.257 20 C -0.134 4.134 21 C -0.203 4.203 22 C -0.199 4.199 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.228 0.772 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.755 -8.412 5.801 10.583 hybrid contribution 0.040 0.682 -0.241 0.724 sum 2.795 -7.730 5.560 9.923 Atomic orbital electron populations 1.21757 0.95644 1.00943 1.02523 1.21876 0.96260 0.96523 1.02288 1.20695 0.92610 0.92157 0.88183 0.90979 1.44209 1.77211 1.03090 1.11888 1.18495 0.89497 0.84230 0.90265 1.20628 1.27426 0.94070 0.97050 1.20598 0.95239 0.93854 0.95995 1.21520 1.19860 0.98597 0.94268 1.18172 0.86493 0.86435 0.92032 1.19554 1.40510 0.94367 0.92655 0.89989 1.26004 0.93620 0.94630 1.00726 1.70091 1.27776 1.04948 1.31308 0.86391 0.78571 0.80344 0.81901 1.19593 1.20311 1.18607 1.68147 1.24541 1.11429 1.21542 1.21614 0.96741 1.00416 0.94632 1.21880 1.00777 1.00386 0.97272 1.21781 0.99443 0.99668 0.99041 0.91809 0.93062 0.93363 0.91012 0.91574 0.77211 0.89138 0.89129 0.88864 0.91937 0.90681 0.92645 0.93104 0.92907 0.93674 0.93138 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.85 37.16 0.37 -1.61 16 2 C -0.13 -1.67 4.74 -26.73 -0.13 -1.80 16 3 C 0.17 2.65 1.50 -67.93 -0.10 2.55 16 4 H 0.07 1.20 6.37 -51.93 -0.33 0.86 16 5 N -0.73 -14.33 3.89 -53.90 -0.21 -14.54 16 6 C 0.42 10.08 7.59 -155.32 -1.18 8.90 16 7 C -0.37 -8.48 8.88 -38.87 -0.35 -8.83 16 8 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 9 C -0.32 -8.24 9.83 -38.65 -0.38 -8.62 16 10 C 0.30 8.35 6.52 -85.00 -0.55 7.79 16 11 C -0.44 -12.07 9.13 -37.74 -0.34 -12.42 16 12 H 0.08 2.13 7.86 -52.49 -0.41 1.72 16 13 C 0.08 1.95 5.47 -17.35 -0.09 1.85 16 14 N -0.72 -19.30 11.56 55.55 0.64 -18.66 16 15 Si 0.90 19.01 29.57 -169.99 -5.03 13.98 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 19 N -0.54 -14.83 8.00 -10.33 -0.08 -14.91 16 20 C -0.11 -1.65 2.86 -90.62 -0.26 -1.91 16 21 C -0.15 -1.68 8.85 37.16 0.33 -1.35 16 22 C -0.14 -2.00 8.68 37.16 0.32 -1.67 16 23 H 0.06 0.98 7.62 -51.92 -0.40 0.59 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.78 6.16 -51.93 -0.32 0.46 16 27 H 0.07 0.83 6.72 -51.93 -0.35 0.48 16 28 H 0.39 7.87 8.69 -40.82 -0.35 7.52 16 29 H 0.09 1.88 6.17 -52.48 -0.32 1.56 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 33 H 0.07 1.29 7.76 -51.93 -0.40 0.89 16 34 H 0.05 0.57 6.32 -51.93 -0.33 0.24 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.62 6.55 -51.93 -0.34 0.28 16 39 H 0.06 1.03 7.60 -51.93 -0.39 0.63 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -28.97 311.33 -8.80 -37.77 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.05 Total: 9.94 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.77 Total: -18.28 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.35 Total: -48.11 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.97 -8.80 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310037600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.572 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds