Wall clock time and date at job start Mon Mar 30 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 H 1.09001 * 109.47124 * 54.79546 * 3 2 1 5 5 N 1.46507 * 109.46944 * 294.79679 * 3 2 1 6 6 C 1.38820 * 119.99525 * 157.50452 * 5 3 2 7 7 C 1.39792 * 119.59115 * 355.00567 * 6 5 3 8 8 C 1.38592 * 119.49507 * 179.78769 * 7 6 5 9 9 C 1.38398 * 118.67747 * 0.48338 * 8 7 6 10 10 C 1.40548 * 119.14671 * 359.74329 * 9 8 7 11 11 C 1.41321 * 119.78251 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99968 * 7.24514 * 11 10 9 13 13 C 1.40026 * 120.00312 * 187.24197 * 11 10 9 14 14 N 1.30742 * 119.99564 * 7.20255 * 13 11 10 15 15 Si 1.86796 * 120.00125 * 187.20296 * 13 11 10 16 16 H 1.48505 * 109.47083 * 94.98964 * 15 13 11 17 17 H 1.48496 * 109.46968 * 214.98894 * 15 13 11 18 18 H 1.48497 * 109.47060 * 334.99063 * 15 13 11 19 19 N 1.31961 * 119.57999 * 175.28282 * 6 5 3 20 20 C 1.52998 * 109.47271 * 174.79549 * 3 2 1 21 21 C 1.53004 * 109.46945 * 299.99927 * 20 3 2 22 22 C 1.53001 * 109.47070 * 59.99723 * 20 3 2 23 23 H 1.09007 * 109.47248 * 55.39301 * 1 2 3 24 24 H 1.08997 * 109.47294 * 295.39836 * 1 2 3 25 25 H 1.08995 * 109.47196 * 175.39261 * 1 2 3 26 26 H 1.08994 * 109.47016 * 119.99557 * 2 1 3 27 27 H 1.09001 * 109.47129 * 239.99711 * 2 1 3 28 28 H 0.97000 * 119.99899 * 337.50001 * 5 3 2 29 29 H 1.08007 * 120.24971 * 359.97438 * 7 6 5 30 30 H 1.08000 * 120.66298 * 180.22469 * 8 7 6 31 31 H 1.08001 * 120.42100 * 179.76716 * 9 8 7 32 32 H 0.96997 * 120.00065 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.47267 * 179.97438 * 20 3 2 34 34 H 1.09004 * 109.46845 * 59.99856 * 21 20 3 35 35 H 1.09000 * 109.47095 * 179.97438 * 21 20 3 36 36 H 1.09001 * 109.47267 * 299.99891 * 21 20 3 37 37 H 1.09000 * 109.47007 * 180.02562 * 22 20 3 38 38 H 1.08995 * 109.47288 * 300.00248 * 22 20 3 39 39 H 1.08998 * 109.47041 * 60.00522 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9826 0.8397 5 7 1.6566 2.0960 -1.2539 6 6 1.5768 3.4804 -1.3189 7 6 1.7611 4.2377 -0.1584 8 6 1.6853 5.6199 -0.2264 9 6 1.4175 6.2110 -1.4488 10 6 1.2370 5.3951 -2.5789 11 6 0.9635 5.9846 -3.8338 12 1 1.0092 7.0576 -3.9478 13 6 0.6334 5.1775 -4.9294 14 7 0.4400 3.8954 -4.7621 15 14 0.4694 5.9328 -6.6300 16 1 1.7535 5.7884 -7.3617 17 1 -0.6079 5.2370 -7.3787 18 1 0.1321 7.3732 -6.5015 19 7 1.3224 4.0647 -2.4744 20 6 3.5644 1.4445 0.1308 21 6 3.9647 0.7621 1.4404 22 6 4.1784 0.6864 -1.0478 23 1 -0.3634 0.5837 -0.8459 24 1 -0.3634 0.4408 0.9283 25 1 -0.3633 -1.0243 -0.0825 26 1 1.8933 -0.5137 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.4586 1.5614 -2.0387 29 1 1.9639 3.7495 0.7834 30 1 1.8282 6.2235 0.6577 31 1 1.3486 7.2855 -1.5332 32 1 0.2110 3.3363 -5.5209 33 1 3.9278 2.4721 0.1304 34 1 3.6013 -0.2656 1.4404 35 1 5.0508 0.7631 1.5334 36 1 3.5273 1.3021 2.2801 37 1 5.2644 0.6875 -0.9543 38 1 3.8151 -0.3412 -1.0478 39 1 3.8933 1.1727 -1.9807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310037600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:15 Heat of formation + Delta-G solvation = 1.451474 kcal Electronic energy + Delta-G solvation = -18438.723305 eV Core-core repulsion = 15765.794899 eV Total energy + Delta-G solvation = -2672.928406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.42523 -38.82675 -35.57574 -34.31160 -33.12324 -32.19186 -30.32223 -28.02949 -27.24319 -26.49956 -23.72359 -22.97266 -22.42420 -20.08358 -19.10022 -18.06405 -16.72406 -16.58131 -16.26694 -15.94329 -15.36717 -15.30078 -14.71106 -14.59393 -14.20061 -13.91608 -13.61065 -13.18752 -12.98477 -12.94564 -12.76589 -12.70897 -12.60769 -12.38014 -12.18501 -11.97278 -11.82851 -11.74964 -11.49688 -11.18142 -11.16096 -10.53519 -9.82308 -9.40315 -8.33091 -8.14993 -6.45038 1.07710 1.36970 1.40768 1.54533 1.58514 2.25144 2.73473 2.93038 3.83032 3.93700 4.11066 4.18838 4.32467 4.35769 4.42104 4.50104 4.66823 4.81034 4.83768 4.88083 4.93901 5.00749 5.01943 5.04607 5.10620 5.14511 5.15988 5.27038 5.32124 5.37663 5.45790 5.52683 5.56242 5.75330 5.99033 6.11928 6.25171 6.62151 6.87086 7.00066 7.27449 8.36662 8.52561 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.006289 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.515183 B = 4451.040740 C = 4851.939604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.166 3.834 4 H 0.065 0.935 5 N -0.720 5.720 6 C 0.402 3.598 7 C -0.365 4.365 8 C -0.031 4.031 9 C -0.349 4.349 10 C 0.262 3.738 11 C -0.476 4.476 12 H 0.084 0.916 13 C 0.030 3.970 14 N -0.755 5.755 15 Si 0.985 3.015 16 H -0.266 1.266 17 H -0.267 1.267 18 H -0.256 1.256 19 N -0.569 5.569 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.138 4.138 23 H 0.031 0.969 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.389 0.611 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.277 0.723 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -9.145 7.397 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C 0.061 3.939 4 H 0.083 0.917 5 N -0.354 5.354 6 C 0.161 3.839 7 C -0.390 4.390 8 C -0.055 4.055 9 C -0.372 4.372 10 C 0.135 3.865 11 C -0.508 4.508 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.377 5.377 15 Si 0.805 3.195 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.180 1.180 19 N -0.291 5.291 20 C -0.130 4.130 21 C -0.196 4.196 22 C -0.195 4.195 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.223 0.777 29 H 0.134 0.866 30 H 0.144 0.856 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.198 -9.859 6.776 12.383 hybrid contribution -0.066 1.037 -0.393 1.110 sum 3.132 -8.822 6.383 11.331 Atomic orbital electron populations 1.21734 0.95977 1.01770 1.01207 1.21861 0.95856 0.94388 1.03935 1.20988 0.93532 0.93598 0.85808 0.91730 1.44392 1.76225 1.01457 1.13303 1.18926 0.88877 0.86123 0.90007 1.20943 1.26186 0.94195 0.97700 1.20997 0.93676 0.94442 0.96431 1.21665 1.21757 0.98921 0.94843 1.18649 0.87267 0.87325 0.93268 1.19892 1.42282 0.94859 0.93776 0.89811 1.26907 0.92626 0.94957 1.04689 1.70181 1.28268 1.06355 1.32882 0.85171 0.78758 0.79511 0.76037 1.19123 1.19162 1.17977 1.68127 1.26040 1.11608 1.23358 1.21540 0.95590 0.99134 0.96766 1.21832 1.01551 1.01106 0.95133 1.21741 1.00204 1.00404 0.97137 0.94944 0.92875 0.91155 0.87916 0.91139 0.77700 0.86614 0.85622 0.88267 0.91301 0.93954 0.90570 0.92168 0.92436 0.92614 0.90915 0.95357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.85 71.98 0.71 -2.93 16 2 C -0.12 -2.78 4.74 30.60 0.14 -2.64 16 3 C 0.17 4.94 1.50 44.99 0.07 5.01 16 4 H 0.06 2.03 6.37 -2.39 -0.02 2.02 16 5 N -0.72 -28.69 3.89 -324.44 -1.26 -29.95 16 6 C 0.40 19.96 7.59 133.42 1.01 20.97 16 7 C -0.36 -16.87 8.88 22.73 0.20 -16.66 16 8 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 9 C -0.35 -18.50 9.83 22.87 0.22 -18.27 16 10 C 0.26 15.41 6.52 40.18 0.26 15.67 16 11 C -0.48 -27.22 9.13 23.46 0.21 -27.01 16 12 H 0.08 4.53 7.86 -2.91 -0.02 4.51 16 13 C 0.03 1.58 5.47 85.29 0.47 2.05 16 14 N -0.75 -41.74 11.56 21.84 0.25 -41.49 16 15 Si 0.98 39.67 29.57 68.60 2.03 41.69 16 16 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 17 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 N -0.57 -32.75 8.00 -186.59 -1.49 -34.24 16 20 C -0.11 -3.02 2.86 -10.79 -0.03 -3.06 16 21 C -0.14 -2.73 8.85 71.98 0.64 -2.09 16 22 C -0.14 -3.68 8.68 71.98 0.63 -3.05 16 23 H 0.03 0.98 7.62 -2.38 -0.02 0.96 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.10 1.76 6.16 -2.39 -0.01 1.75 16 27 H 0.07 1.57 6.72 -2.39 -0.02 1.56 16 28 H 0.39 16.02 8.69 -92.71 -0.81 15.21 16 29 H 0.12 4.67 6.17 -2.91 -0.02 4.65 16 30 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 32 H 0.28 13.81 8.29 -92.71 -0.77 13.04 16 33 H 0.04 1.44 7.76 -2.39 -0.02 1.42 16 34 H 0.08 1.20 6.32 -2.39 -0.02 1.18 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.60 6.55 -2.39 -0.02 1.59 16 39 H 0.03 0.93 7.60 -2.39 -0.02 0.91 16 Total: -1.00 -65.53 311.33 4.52 -61.01 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.23 Total: 36.23 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 4.76 Total: -33.25 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -2.50 Total: -105.68 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Total: -65.53 4.52 -61.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310037600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.458 kcal (2) G-P(sol) polarization free energy of solvation -65.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds