Wall clock time and date at job start Mon Mar 30 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99937 * 2 1 4 4 C 1.53000 * 109.46982 * 60.00299 * 3 2 1 5 5 C 1.52994 * 109.47553 * 299.99971 * 3 2 1 6 6 C 1.53002 * 109.47111 * 179.97438 * 3 2 1 7 7 N 1.46499 * 109.46863 * 60.00420 * 6 3 2 8 8 C 1.39685 * 120.00341 * 180.02562 * 7 6 3 9 9 C 1.39337 * 119.94932 * 359.97438 * 8 7 6 10 10 C 1.38478 * 120.42823 * 180.02562 * 9 8 7 11 11 C 1.37688 * 120.32117 * 359.97438 * 10 9 8 12 12 C 1.40752 * 119.89434 * 0.03305 * 11 10 9 13 13 C 1.41411 * 120.20601 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00317 * 24.35956 * 13 12 11 15 15 C 1.39935 * 119.99624 * 204.36087 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.84631 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.84653 * 15 13 12 18 18 H 1.48501 * 109.47546 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47184 * 119.99998 * 17 15 13 20 20 H 1.48498 * 109.47199 * 240.00043 * 17 15 13 21 21 C 1.38275 * 119.95691 * 179.97438 * 8 7 6 22 22 H 1.09001 * 109.46869 * 299.99426 * 1 2 3 23 23 H 1.09000 * 109.46813 * 59.99559 * 1 2 3 24 24 H 1.08998 * 109.47085 * 179.97438 * 1 2 3 25 25 H 1.00896 * 111.00057 * 236.04853 * 2 1 3 26 26 H 1.09000 * 109.47695 * 179.97438 * 4 3 2 27 27 H 1.08996 * 109.47168 * 299.99702 * 4 3 2 28 28 H 1.09004 * 109.47458 * 59.99393 * 4 3 2 29 29 H 1.08994 * 109.46988 * 300.00419 * 5 3 2 30 30 H 1.09005 * 109.46975 * 60.00032 * 5 3 2 31 31 H 1.08991 * 109.47356 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.47151 * 300.00895 * 6 3 2 33 33 H 1.09002 * 109.47344 * 180.02562 * 6 3 2 34 34 H 0.97003 * 120.00136 * 359.97438 * 7 6 3 35 35 H 1.07999 * 119.78413 * 0.02562 * 9 8 7 36 36 H 1.07997 * 119.84142 * 179.97438 * 10 9 8 37 37 H 1.07997 * 120.05363 * 179.97438 * 11 10 9 38 38 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 39 39 H 1.08008 * 120.15896 * 359.70358 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5049 2.1060 1.2493 5 6 1.5050 2.1061 -1.2492 6 6 3.5249 1.3306 0.0006 7 7 3.9951 0.6271 -1.1953 8 6 5.3646 0.4624 -1.4156 9 6 6.2827 0.9680 -0.4975 10 6 7.6426 0.8108 -0.7063 11 6 8.1025 0.1519 -1.8243 12 6 7.1871 -0.3642 -2.7607 13 6 7.6523 -1.0415 -3.9116 14 1 8.6252 -1.5102 -3.9060 15 6 6.8518 -1.1044 -5.0577 16 7 5.8546 -0.2707 -5.2057 17 14 7.2074 -2.3788 -6.3763 18 1 8.3805 -3.1949 -5.9726 19 1 6.0244 -3.2607 -6.5442 20 1 7.5003 -1.6936 -7.6608 21 6 5.8073 -0.2023 -2.5444 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8306 -0.5261 -0.7814 26 1 1.8958 3.1235 1.2496 27 1 0.4154 2.1351 1.2493 28 1 1.8544 1.5826 2.1393 29 1 1.8544 1.5828 -2.1391 30 1 0.4153 2.1352 -1.2492 31 1 1.8952 3.1237 -1.2489 32 1 3.8741 0.8073 0.8908 33 1 3.9156 2.3482 0.0011 34 1 3.3554 0.2750 -1.8338 35 1 5.9314 1.4859 0.3827 36 1 8.3458 1.2069 0.0113 37 1 9.1640 0.0321 -1.9831 38 1 5.3000 -0.3140 -6.0004 39 1 5.0965 -0.5988 -3.2544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313419379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:20 Heat of formation + Delta-G solvation = 17.662497 kcal Electronic energy + Delta-G solvation = -18069.080647 eV Core-core repulsion = 15396.855203 eV Total energy + Delta-G solvation = -2672.225444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.88062 -37.34516 -34.36502 -33.09299 -31.25621 -29.38894 -28.25327 -27.35845 -25.65931 -25.18021 -24.05752 -20.98057 -19.93348 -18.99731 -17.17778 -16.56617 -15.51552 -15.03479 -14.87535 -14.61163 -14.30105 -13.86809 -13.42965 -13.08837 -12.72951 -12.65046 -12.38035 -12.23377 -12.12553 -11.86194 -11.53605 -11.34543 -11.08189 -11.07394 -10.94992 -10.66313 -10.49085 -10.34379 -9.57788 -9.39598 -9.20167 -8.70096 -8.41459 -7.26161 -6.69516 -6.10505 -4.26984 2.88674 3.12017 3.18006 3.27833 3.37916 4.00626 4.12183 4.39195 4.76908 4.79640 5.02813 5.12025 5.30496 5.42299 5.58097 5.64830 5.78587 5.81961 5.86081 5.89452 6.05879 6.09937 6.15558 6.32201 6.32924 6.64706 6.92873 7.03641 7.15458 7.18078 7.36901 7.42225 7.48713 7.85970 8.01285 8.15583 8.22001 8.53663 8.73572 8.88565 9.05774 9.16699 10.29143 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.005700 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.306677 B = 4911.216546 C = 5742.337984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.681 5.681 3 C 0.098 3.902 4 C -0.137 4.137 5 C -0.180 4.180 6 C 0.150 3.850 7 N -0.758 5.758 8 C 0.217 3.783 9 C -0.297 4.297 10 C -0.066 4.066 11 C -0.258 4.258 12 C 0.138 3.862 13 C -0.465 4.465 14 H 0.076 0.924 15 C 0.078 3.922 16 N -0.794 5.794 17 Si 0.903 3.097 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.276 1.276 21 C -0.231 4.231 22 H 0.065 0.935 23 H 0.024 0.976 24 H 0.063 0.937 25 H 0.345 0.655 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.384 0.616 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.276 0.724 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 2.499 6.293 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.313 5.313 3 C 0.006 3.994 4 C -0.195 4.195 5 C -0.239 4.239 6 C 0.025 3.975 7 N -0.392 5.392 8 C 0.119 3.881 9 C -0.320 4.320 10 C -0.085 4.085 11 C -0.278 4.278 12 C 0.135 3.865 13 C -0.495 4.495 14 H 0.094 0.906 15 C -0.139 4.139 16 N -0.420 5.420 17 Si 0.728 3.272 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.202 1.202 21 C -0.255 4.255 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.082 0.918 25 H 0.164 0.836 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.218 0.782 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.296 2.597 6.991 12.713 hybrid contribution -0.365 -0.306 -1.896 1.955 sum -10.661 2.291 5.094 12.035 Atomic orbital electron populations 1.22286 0.88540 1.01565 1.00432 1.60574 1.07234 1.13131 1.50349 1.21198 0.94883 0.88346 0.94933 1.21816 1.00844 0.99708 0.97126 1.22515 1.00868 1.01823 0.98718 1.21091 0.90421 0.96492 0.89520 1.44374 1.04312 1.65453 1.25083 1.17624 0.81929 0.94617 0.93967 1.19884 0.92814 1.16899 1.02405 1.20283 0.94050 0.97922 0.96279 1.20857 0.97491 1.10098 0.99382 1.17319 0.90788 0.87468 0.90896 1.19582 1.02808 1.30805 0.96284 0.90593 1.25863 0.94021 0.94773 0.99232 1.69883 1.15219 1.30065 1.26809 0.86359 0.79521 0.81279 0.80088 1.18451 1.19887 1.20177 1.20699 0.96351 1.10411 0.98047 0.91578 0.95771 0.91781 0.83593 0.92111 0.92489 0.91660 0.92134 0.92654 0.91836 0.92509 0.93039 0.78188 0.89667 0.89681 0.89450 0.91373 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.91 60.07 0.60 0.82 16 2 N -0.68 -8.67 6.44 -107.18 -0.69 -9.36 16 3 C 0.10 1.24 0.71 -131.60 -0.09 1.14 16 4 C -0.14 -1.47 8.24 37.16 0.31 -1.17 16 5 C -0.18 -2.22 8.06 37.15 0.30 -1.92 16 6 C 0.15 2.38 4.01 -4.04 -0.02 2.36 16 7 N -0.76 -14.34 5.14 -58.68 -0.30 -14.64 16 8 C 0.22 5.11 6.64 -83.86 -0.56 4.55 16 9 C -0.30 -6.88 9.32 -39.08 -0.36 -7.24 16 10 C -0.07 -1.57 10.02 -39.69 -0.40 -1.96 16 11 C -0.26 -6.62 9.79 -38.83 -0.38 -7.00 16 12 C 0.14 3.81 5.57 -106.85 -0.60 3.21 16 13 C -0.46 -12.70 9.05 -37.74 -0.34 -13.04 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 15 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 16 N -0.79 -20.83 10.95 55.55 0.61 -20.22 16 17 Si 0.90 19.05 29.59 -169.99 -5.03 14.02 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 C -0.23 -6.09 8.53 -38.68 -0.33 -6.42 16 22 H 0.07 0.63 6.30 -51.93 -0.33 0.30 16 23 H 0.02 0.24 6.30 -51.93 -0.33 -0.09 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.34 4.67 7.43 -39.29 -0.29 4.38 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.55 6.40 -51.93 -0.33 0.21 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.83 6.86 -51.93 -0.36 0.47 16 30 H 0.05 0.60 6.40 -51.93 -0.33 0.27 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 33 H 0.05 0.83 7.94 -51.93 -0.41 0.42 16 34 H 0.38 6.93 6.28 -40.82 -0.26 6.68 16 35 H 0.09 1.79 6.70 -52.49 -0.35 1.44 16 36 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 39 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -28.12 308.07 -8.55 -36.67 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -5.81 Total: 13.65 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -1.96 Total: -24.75 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.38 Total: -44.22 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.12 -8.55 -36.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.328 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds