Wall clock time and date at job start Mon Mar 30 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99937 * 2 1 4 4 C 1.53000 * 109.46982 * 60.00299 * 3 2 1 5 5 C 1.52994 * 109.47553 * 299.99971 * 3 2 1 6 6 C 1.53002 * 109.47111 * 179.97438 * 3 2 1 7 7 N 1.46499 * 109.46863 * 60.00420 * 6 3 2 8 8 C 1.39685 * 120.00341 * 180.02562 * 7 6 3 9 9 C 1.39337 * 119.94932 * 359.97438 * 8 7 6 10 10 C 1.38478 * 120.42823 * 180.02562 * 9 8 7 11 11 C 1.37688 * 120.32117 * 359.97438 * 10 9 8 12 12 C 1.40752 * 119.89434 * 0.03305 * 11 10 9 13 13 C 1.41411 * 120.20601 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00317 * 24.35956 * 13 12 11 15 15 C 1.39935 * 119.99624 * 204.36087 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.84631 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.84653 * 15 13 12 18 18 H 1.48501 * 109.47546 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47184 * 119.99998 * 17 15 13 20 20 H 1.48498 * 109.47199 * 240.00043 * 17 15 13 21 21 C 1.38275 * 119.95691 * 179.97438 * 8 7 6 22 22 H 1.09001 * 109.46869 * 299.99426 * 1 2 3 23 23 H 1.09000 * 109.46813 * 59.99559 * 1 2 3 24 24 H 1.08998 * 109.47085 * 179.97438 * 1 2 3 25 25 H 1.00896 * 111.00057 * 236.04853 * 2 1 3 26 26 H 1.09000 * 109.47695 * 179.97438 * 4 3 2 27 27 H 1.08996 * 109.47168 * 299.99702 * 4 3 2 28 28 H 1.09004 * 109.47458 * 59.99393 * 4 3 2 29 29 H 1.08994 * 109.46988 * 300.00419 * 5 3 2 30 30 H 1.09005 * 109.46975 * 60.00032 * 5 3 2 31 31 H 1.08991 * 109.47356 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.47151 * 300.00895 * 6 3 2 33 33 H 1.09002 * 109.47344 * 180.02562 * 6 3 2 34 34 H 0.97003 * 120.00136 * 359.97438 * 7 6 3 35 35 H 1.07999 * 119.78413 * 0.02562 * 9 8 7 36 36 H 1.07997 * 119.84142 * 179.97438 * 10 9 8 37 37 H 1.07997 * 120.05363 * 179.97438 * 11 10 9 38 38 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 39 39 H 1.08008 * 120.15896 * 359.70358 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5049 2.1060 1.2493 5 6 1.5050 2.1061 -1.2492 6 6 3.5249 1.3306 0.0006 7 7 3.9951 0.6271 -1.1953 8 6 5.3646 0.4624 -1.4156 9 6 6.2827 0.9680 -0.4975 10 6 7.6426 0.8108 -0.7063 11 6 8.1025 0.1519 -1.8243 12 6 7.1871 -0.3642 -2.7607 13 6 7.6523 -1.0415 -3.9116 14 1 8.6252 -1.5102 -3.9060 15 6 6.8518 -1.1044 -5.0577 16 7 5.8546 -0.2707 -5.2057 17 14 7.2074 -2.3788 -6.3763 18 1 8.3805 -3.1949 -5.9726 19 1 6.0244 -3.2607 -6.5442 20 1 7.5003 -1.6936 -7.6608 21 6 5.8073 -0.2023 -2.5444 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8306 -0.5261 -0.7814 26 1 1.8958 3.1235 1.2496 27 1 0.4154 2.1351 1.2493 28 1 1.8544 1.5826 2.1393 29 1 1.8544 1.5828 -2.1391 30 1 0.4153 2.1352 -1.2492 31 1 1.8952 3.1237 -1.2489 32 1 3.8741 0.8073 0.8908 33 1 3.9156 2.3482 0.0011 34 1 3.3554 0.2750 -1.8338 35 1 5.9314 1.4859 0.3827 36 1 8.3458 1.2069 0.0113 37 1 9.1640 0.0321 -1.9831 38 1 5.3000 -0.3140 -6.0004 39 1 5.0965 -0.5988 -3.2544 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313419379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:20 Heat of formation + Delta-G solvation = 0.387397 kcal Electronic energy + Delta-G solvation = -18069.829751 eV Core-core repulsion = 15396.855203 eV Total energy + Delta-G solvation = -2672.974548 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.16991 -38.99346 -36.06177 -34.86564 -32.34537 -31.33345 -29.83499 -28.33098 -27.10503 -26.80253 -25.31580 -22.85454 -21.73837 -20.08917 -19.06272 -17.99033 -17.02338 -16.50161 -16.42690 -15.99429 -15.83212 -15.05607 -14.81034 -14.44425 -14.41772 -14.01529 -13.84559 -13.64115 -13.32558 -13.09108 -12.87512 -12.74209 -12.68004 -12.46271 -12.20086 -12.15750 -11.98620 -11.73787 -11.45546 -11.28361 -11.06738 -10.47242 -9.37586 -9.23793 -8.61394 -7.88294 -6.30867 1.08833 1.35016 1.38876 1.53457 1.58290 2.23730 2.78711 2.83445 3.23702 3.74286 3.88388 4.00304 4.10985 4.46261 4.52706 4.59559 4.65511 4.72535 4.76397 4.81660 4.85483 4.93860 5.00766 5.00880 5.03363 5.21200 5.21984 5.31817 5.35021 5.46500 5.61146 5.97083 6.08761 6.13415 6.22892 6.27417 6.34062 6.59327 6.95004 7.05633 7.07272 7.25485 8.39087 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.005700 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.306677 B = 4911.216546 C = 5742.337984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.693 5.693 3 C 0.104 3.896 4 C -0.133 4.133 5 C -0.176 4.176 6 C 0.149 3.851 7 N -0.748 5.748 8 C 0.221 3.779 9 C -0.302 4.302 10 C -0.063 4.063 11 C -0.286 4.286 12 C 0.108 3.892 13 C -0.504 4.504 14 H 0.071 0.929 15 C 0.038 3.962 16 N -0.822 5.822 17 Si 0.979 3.021 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.266 1.266 21 C -0.258 4.258 22 H 0.077 0.923 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.337 0.663 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.388 0.612 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.284 0.716 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.517 2.845 6.936 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.324 5.324 3 C 0.013 3.987 4 C -0.191 4.191 5 C -0.235 4.235 6 C 0.024 3.976 7 N -0.381 5.381 8 C 0.120 3.880 9 C -0.325 4.325 10 C -0.081 4.081 11 C -0.307 4.307 12 C 0.105 3.895 13 C -0.534 4.534 14 H 0.089 0.911 15 C -0.177 4.177 16 N -0.448 5.448 17 Si 0.800 3.200 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.191 1.191 21 C -0.283 4.283 22 H 0.096 0.904 23 H 0.047 0.953 24 H 0.089 0.911 25 H 0.155 0.845 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.222 0.778 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.672 2.964 7.664 14.275 hybrid contribution -0.014 -0.344 -1.993 2.022 sum -11.686 2.620 5.672 13.252 Atomic orbital electron populations 1.22352 0.86872 1.02342 1.01170 1.60619 1.08840 1.12945 1.49998 1.21144 0.92531 0.88829 0.96220 1.21802 1.01889 0.99787 0.95631 1.22475 1.02010 1.01386 0.97635 1.21264 0.92912 0.95780 0.87626 1.44437 1.02712 1.64877 1.26054 1.17746 0.84083 0.93180 0.92985 1.20219 0.92701 1.16568 1.02985 1.20645 0.95033 0.96551 0.95917 1.21020 0.97521 1.11676 1.00473 1.17715 0.91827 0.88189 0.91744 1.19824 1.03482 1.32524 0.97572 0.91128 1.26694 0.93508 0.96349 1.01109 1.69932 1.15909 1.31120 1.27866 0.85219 0.79463 0.78320 0.77014 1.18387 1.18886 1.19087 1.20627 0.95839 1.12531 0.99266 0.90439 0.95258 0.91138 0.84544 0.91169 0.90865 0.91915 0.93999 0.90845 0.91817 0.93118 0.92923 0.77782 0.87108 0.86432 0.89268 0.90527 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.91 127.69 1.27 1.66 16 2 N -0.69 -16.50 6.44 -493.00 -3.18 -19.68 16 3 C 0.10 2.43 0.71 3.53 0.00 2.44 16 4 C -0.13 -2.48 8.24 71.98 0.59 -1.89 16 5 C -0.18 -4.01 8.06 71.98 0.58 -3.43 16 6 C 0.15 4.49 4.01 86.38 0.35 4.84 16 7 N -0.75 -28.06 5.14 -339.57 -1.75 -29.81 16 8 C 0.22 10.45 6.64 38.16 0.25 10.70 16 9 C -0.30 -13.67 9.32 22.59 0.21 -13.46 16 10 C -0.06 -2.92 10.02 22.20 0.22 -2.69 16 11 C -0.29 -15.02 9.79 22.75 0.22 -14.80 16 12 C 0.11 6.17 5.57 -21.31 -0.12 6.05 16 13 C -0.50 -28.58 9.05 23.46 0.21 -28.37 16 14 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 15 C 0.04 1.98 5.14 85.25 0.44 2.42 16 16 N -0.82 -44.11 10.95 21.82 0.24 -43.87 16 17 Si 0.98 39.51 29.59 68.60 2.03 41.54 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 21 C -0.26 -14.03 8.53 22.85 0.19 -13.84 16 22 H 0.08 1.24 6.30 -2.39 -0.02 1.22 16 23 H 0.03 0.51 6.30 -2.39 -0.02 0.49 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.34 8.85 7.43 -89.70 -0.67 8.18 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.14 6.40 -2.39 -0.02 1.13 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.10 6.86 -2.39 -0.02 1.09 16 30 H 0.07 1.40 6.40 -2.38 -0.02 1.39 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.62 7.94 -2.39 -0.02 1.60 16 33 H 0.05 1.60 7.94 -2.39 -0.02 1.58 16 34 H 0.39 14.07 6.28 -92.71 -0.58 13.49 16 35 H 0.11 4.39 6.70 -2.91 -0.02 4.37 16 36 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.09 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.28 13.72 8.30 -92.71 -0.77 12.96 16 39 H 0.10 5.59 6.16 -2.91 -0.02 5.58 16 Total: -1.00 -61.46 308.07 1.57 -59.88 By element: Atomic # 1 Polarization: 42.48 SS G_CDS: -0.20 Total: 42.28 kcal Atomic # 6 Polarization: -54.78 SS G_CDS: 4.42 Total: -50.35 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -4.68 Total: -93.35 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -61.46 1.57 -59.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.271 kcal (2) G-P(sol) polarization free energy of solvation -61.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds