Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 N 1.46902 * 109.46766 * 240.00140 * 2 1 3 5 5 C 1.52996 * 109.46970 * 120.00252 * 2 1 3 6 6 C 1.53006 * 109.46916 * 180.02562 * 5 2 1 7 7 N 1.46504 * 109.47036 * 179.97438 * 6 5 2 8 8 C 1.39685 * 119.99856 * 179.97438 * 7 6 5 9 9 C 1.39337 * 119.95014 * 359.97438 * 8 7 6 10 10 C 1.38475 * 120.42035 * 180.02562 * 9 8 7 11 11 C 1.37684 * 120.32918 * 359.97438 * 10 9 8 12 12 C 1.40751 * 119.89421 * 0.03199 * 11 10 9 13 13 C 1.41406 * 120.20989 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99858 * 24.36605 * 13 12 11 15 15 C 1.39935 * 119.99740 * 204.36617 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.83614 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.83636 * 15 13 12 18 18 H 1.48497 * 109.47206 * 89.99987 * 17 15 13 19 19 H 1.48507 * 109.47251 * 209.99859 * 17 15 13 20 20 H 1.48501 * 109.47426 * 329.99960 * 17 15 13 21 21 C 1.38280 * 119.95177 * 179.97438 * 8 7 6 22 22 H 1.08997 * 109.47110 * 299.99552 * 1 2 3 23 23 H 1.09002 * 109.47243 * 60.00015 * 1 2 3 24 24 H 1.08998 * 109.46775 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46739 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47132 * 300.00053 * 3 2 1 27 27 H 1.08997 * 109.46845 * 60.00285 * 3 2 1 28 28 H 1.00898 * 110.99800 * 299.99584 * 4 2 1 29 29 H 1.00893 * 111.00078 * 63.95967 * 4 2 1 30 30 H 1.08998 * 109.47629 * 60.00207 * 5 2 1 31 31 H 1.09005 * 109.47117 * 299.99808 * 5 2 1 32 32 H 1.08998 * 109.47120 * 59.99507 * 6 5 2 33 33 H 1.09005 * 109.46753 * 299.99642 * 6 5 2 34 34 H 0.96998 * 120.00141 * 0.02562 * 7 6 5 35 35 H 1.07997 * 119.78902 * 0.02562 * 9 8 7 36 36 H 1.08005 * 119.83675 * 179.97438 * 10 9 8 37 37 H 1.08001 * 120.05769 * 179.97438 * 11 10 9 38 38 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.15877 * 359.70841 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 6 3.5701 -0.7207 1.2495 7 7 4.0584 -1.4109 2.4460 8 6 5.4318 -1.5384 2.6671 9 6 6.3363 -1.0093 1.7487 10 6 7.6997 -1.1306 1.9579 11 6 8.1768 -1.7755 3.0769 12 6 7.2752 -2.3152 4.0134 13 6 7.7578 -2.9793 5.1647 14 1 8.7431 -2.7536 5.5451 15 6 6.9587 -3.9289 5.8112 16 7 5.9391 -4.4600 5.1868 17 14 7.3480 -4.4383 7.5657 18 1 6.6244 -3.5506 8.5110 19 1 6.9193 -5.8439 7.7798 20 1 8.8099 -4.3254 7.8012 21 6 5.8916 -2.1895 3.7970 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6962 -1.6479 -1.2227 29 1 1.7503 -0.1989 -2.0372 30 1 1.6768 -1.7490 1.2492 31 1 1.6767 -0.2075 2.1392 32 1 3.9330 0.3070 1.2497 33 1 3.9337 -1.2343 0.3595 34 1 3.4281 -1.7799 3.0843 35 1 5.9716 -0.5014 0.8681 36 1 8.3925 -0.7173 1.2397 37 1 9.2411 -1.8679 3.2355 38 1 5.3855 -5.1186 5.6348 39 1 5.1914 -2.5959 4.5118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313419436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = 3.104535 kcal Electronic energy + Delta-G solvation = -17686.728312 eV Core-core repulsion = 15013.871587 eV Total energy + Delta-G solvation = -2672.856724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.42610 -37.41458 -34.66799 -33.16582 -30.31706 -29.33595 -29.22120 -27.46931 -26.56244 -25.11728 -22.73911 -20.83294 -19.72820 -19.24311 -17.11655 -16.04654 -15.73180 -15.17602 -14.98919 -14.58371 -14.35135 -13.91746 -13.43960 -13.26424 -12.72128 -12.54013 -12.32331 -12.09815 -11.96619 -11.75243 -11.66329 -11.30921 -11.02098 -10.98830 -10.83358 -10.64956 -10.42726 -10.28068 -9.52110 -9.34023 -9.13972 -8.77742 -8.59712 -7.21250 -6.64833 -6.02799 -4.22806 2.93661 3.14191 3.18146 3.32935 3.43454 4.03698 4.29510 4.39668 4.78645 4.80301 4.82433 5.10463 5.35293 5.39560 5.56252 5.66655 5.71447 5.82058 5.87796 5.92552 5.99574 6.13184 6.38455 6.46121 6.55284 6.72948 6.98461 7.08473 7.21414 7.23976 7.36567 7.48126 7.55470 7.93120 8.07409 8.21845 8.27008 8.58979 8.85060 8.94397 9.10375 9.22691 10.33847 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.004625 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.921606 B = 6053.057501 C = 6683.398041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.116 3.884 3 C -0.144 4.144 4 N -0.836 5.836 5 C -0.116 4.116 6 C 0.144 3.856 7 N -0.765 5.765 8 C 0.217 3.783 9 C -0.296 4.296 10 C -0.067 4.067 11 C -0.259 4.259 12 C 0.138 3.862 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.078 3.922 16 N -0.794 5.794 17 Si 0.904 3.096 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.233 4.233 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.341 0.659 29 H 0.337 0.663 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.386 0.614 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.276 0.724 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.933 6.218 -7.347 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.023 3.977 3 C -0.201 4.201 4 N -0.366 5.366 5 C -0.155 4.155 6 C 0.019 3.981 7 N -0.398 5.398 8 C 0.118 3.882 9 C -0.319 4.319 10 C -0.086 4.086 11 C -0.280 4.280 12 C 0.135 3.865 13 C -0.497 4.497 14 H 0.093 0.907 15 C -0.139 4.139 16 N -0.420 5.420 17 Si 0.728 3.272 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.187 1.187 21 C -0.257 4.257 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.218 0.782 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.369 6.280 -7.207 14.103 hybrid contribution -1.245 -0.612 0.724 1.565 sum -11.614 5.668 -6.483 14.459 Atomic orbital electron populations 1.22644 0.97300 1.01831 1.02161 1.20733 0.91441 0.94574 0.90946 1.21904 1.02745 0.94167 1.01310 1.58866 1.67573 1.06289 1.03854 1.21772 0.96835 1.00388 0.96478 1.21017 0.91532 0.96491 0.89093 1.44501 1.04198 1.65609 1.25496 1.17658 0.82088 0.94184 0.94272 1.19915 0.92815 1.16622 1.02577 1.20286 0.94021 0.97906 0.96369 1.20848 0.97487 1.11743 0.97874 1.17314 0.90855 0.87700 0.90613 1.19554 1.01881 1.18969 1.09260 0.90650 1.25859 0.94098 0.94881 0.99044 1.69880 1.14644 1.21045 1.36429 0.86399 0.79960 0.77912 0.82884 1.19463 1.20514 1.18713 1.20722 0.96277 1.09710 0.98998 0.92054 0.92796 0.92701 0.91018 0.93084 0.92223 0.84636 0.85018 0.91862 0.91505 0.93599 0.92018 0.78150 0.89518 0.89709 0.89487 0.91318 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 8.76 37.16 0.33 -1.20 16 2 C 0.12 1.18 0.91 -131.60 -0.12 1.06 16 3 C -0.14 -1.47 8.38 37.16 0.31 -1.15 16 4 N -0.84 -8.32 8.11 0.75 0.01 -8.32 16 5 C -0.12 -1.46 4.54 -26.73 -0.12 -1.58 16 6 C 0.14 2.35 4.40 -4.04 -0.02 2.33 16 7 N -0.76 -15.27 5.73 -58.68 -0.34 -15.61 16 8 C 0.22 5.30 6.64 -83.86 -0.56 4.74 16 9 C -0.30 -7.10 9.32 -39.09 -0.36 -7.46 16 10 C -0.07 -1.62 10.01 -39.70 -0.40 -2.02 16 11 C -0.26 -6.79 9.79 -38.83 -0.38 -7.17 16 12 C 0.14 3.88 5.57 -106.85 -0.60 3.29 16 13 C -0.47 -12.96 9.05 -37.74 -0.34 -13.30 16 14 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 15 C 0.08 2.04 5.14 -17.34 -0.09 1.95 16 16 N -0.79 -21.25 10.95 55.55 0.61 -20.64 16 17 Si 0.90 19.32 29.59 -169.99 -5.03 14.29 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 20 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 21 C -0.23 -6.31 8.53 -38.68 -0.33 -6.64 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.34 3.18 9.00 -39.29 -0.35 2.83 16 29 H 0.34 2.77 8.98 -39.30 -0.35 2.41 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.78 6.23 -51.93 -0.32 0.45 16 33 H 0.06 1.10 7.40 -51.93 -0.38 0.72 16 34 H 0.39 7.30 8.48 -40.82 -0.35 6.96 16 35 H 0.09 1.91 6.70 -52.49 -0.35 1.56 16 36 H 0.08 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 38 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 39 H 0.12 3.21 6.16 -52.49 -0.32 2.88 16 LS Contribution 315.46 15.07 4.75 4.75 Total: -1.00 -29.28 315.46 -8.80 -38.08 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -6.12 Total: 14.59 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -2.68 Total: -27.15 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.28 Total: -44.56 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.28 -8.80 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.183 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds