Wall clock time and date at job start Mon Mar 30 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 N 1.46902 * 109.46766 * 240.00140 * 2 1 3 5 5 C 1.52996 * 109.46970 * 120.00252 * 2 1 3 6 6 C 1.53006 * 109.46916 * 180.02562 * 5 2 1 7 7 N 1.46504 * 109.47036 * 179.97438 * 6 5 2 8 8 C 1.39685 * 119.99856 * 179.97438 * 7 6 5 9 9 C 1.39337 * 119.95014 * 359.97438 * 8 7 6 10 10 C 1.38475 * 120.42035 * 180.02562 * 9 8 7 11 11 C 1.37684 * 120.32918 * 359.97438 * 10 9 8 12 12 C 1.40751 * 119.89421 * 0.03199 * 11 10 9 13 13 C 1.41406 * 120.20989 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99858 * 24.36605 * 13 12 11 15 15 C 1.39935 * 119.99740 * 204.36617 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.83614 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.83636 * 15 13 12 18 18 H 1.48497 * 109.47206 * 89.99987 * 17 15 13 19 19 H 1.48507 * 109.47251 * 209.99859 * 17 15 13 20 20 H 1.48501 * 109.47426 * 329.99960 * 17 15 13 21 21 C 1.38280 * 119.95177 * 179.97438 * 8 7 6 22 22 H 1.08997 * 109.47110 * 299.99552 * 1 2 3 23 23 H 1.09002 * 109.47243 * 60.00015 * 1 2 3 24 24 H 1.08998 * 109.46775 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46739 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47132 * 300.00053 * 3 2 1 27 27 H 1.08997 * 109.46845 * 60.00285 * 3 2 1 28 28 H 1.00898 * 110.99800 * 299.99584 * 4 2 1 29 29 H 1.00893 * 111.00078 * 63.95967 * 4 2 1 30 30 H 1.08998 * 109.47629 * 60.00207 * 5 2 1 31 31 H 1.09005 * 109.47117 * 299.99808 * 5 2 1 32 32 H 1.08998 * 109.47120 * 59.99507 * 6 5 2 33 33 H 1.09005 * 109.46753 * 299.99642 * 6 5 2 34 34 H 0.96998 * 120.00141 * 0.02562 * 7 6 5 35 35 H 1.07997 * 119.78902 * 0.02562 * 9 8 7 36 36 H 1.08005 * 119.83675 * 179.97438 * 10 9 8 37 37 H 1.08001 * 120.05769 * 179.97438 * 11 10 9 38 38 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.15877 * 359.70841 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 6 3.5701 -0.7207 1.2495 7 7 4.0584 -1.4109 2.4460 8 6 5.4318 -1.5384 2.6671 9 6 6.3363 -1.0093 1.7487 10 6 7.6997 -1.1306 1.9579 11 6 8.1768 -1.7755 3.0769 12 6 7.2752 -2.3152 4.0134 13 6 7.7578 -2.9793 5.1647 14 1 8.7431 -2.7536 5.5451 15 6 6.9587 -3.9289 5.8112 16 7 5.9391 -4.4600 5.1868 17 14 7.3480 -4.4383 7.5657 18 1 6.6244 -3.5506 8.5110 19 1 6.9193 -5.8439 7.7798 20 1 8.8099 -4.3254 7.8012 21 6 5.8916 -2.1895 3.7970 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6962 -1.6479 -1.2227 29 1 1.7503 -0.1989 -2.0372 30 1 1.6768 -1.7490 1.2492 31 1 1.6767 -0.2075 2.1392 32 1 3.9330 0.3070 1.2497 33 1 3.9337 -1.2343 0.3595 34 1 3.4281 -1.7799 3.0843 35 1 5.9716 -0.5014 0.8681 36 1 8.3925 -0.7173 1.2397 37 1 9.2411 -1.8679 3.2355 38 1 5.3855 -5.1186 5.6348 39 1 5.1914 -2.5959 4.5118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313419436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:41 Heat of formation + Delta-G solvation = -15.464019 kcal Electronic energy + Delta-G solvation = -17687.533504 eV Core-core repulsion = 15013.871587 eV Total energy + Delta-G solvation = -2673.661917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.79946 -38.86730 -36.35206 -35.04310 -31.63892 -31.32274 -30.20921 -28.27537 -28.06560 -27.11191 -24.13733 -22.69833 -21.60077 -20.16578 -19.04542 -17.59693 -16.82144 -16.57692 -16.48131 -16.17691 -15.92625 -15.19866 -14.73607 -14.60268 -14.10161 -14.04848 -13.88564 -13.51753 -13.19150 -12.96405 -12.79784 -12.71608 -12.60099 -12.55563 -12.15256 -12.08966 -11.85069 -11.67403 -11.43474 -11.27223 -11.03616 -10.42188 -9.51708 -9.23983 -8.60468 -7.86905 -6.30802 1.09940 1.35201 1.39207 1.52456 1.60103 2.24280 2.81274 2.88467 3.59100 3.86878 3.89154 3.96445 4.19297 4.38751 4.50801 4.53235 4.70609 4.74470 4.82831 4.88700 4.93864 5.00400 5.09714 5.13257 5.20572 5.22641 5.26581 5.33511 5.45227 5.47603 5.63707 5.98919 6.13226 6.23227 6.28820 6.34714 6.59961 6.68457 6.96343 7.07186 7.10598 7.28695 8.40140 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.004625 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.921606 B = 6053.057501 C = 6683.398041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.120 3.880 3 C -0.144 4.144 4 N -0.847 5.847 5 C -0.109 4.109 6 C 0.147 3.853 7 N -0.758 5.758 8 C 0.219 3.781 9 C -0.302 4.302 10 C -0.063 4.063 11 C -0.286 4.286 12 C 0.108 3.892 13 C -0.505 4.505 14 H 0.072 0.928 15 C 0.037 3.963 16 N -0.823 5.823 17 Si 0.981 3.019 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.261 4.261 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.344 0.656 29 H 0.348 0.652 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.390 0.610 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.285 0.715 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 6.680 -7.746 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.027 3.973 3 C -0.201 4.201 4 N -0.379 5.379 5 C -0.147 4.147 6 C 0.023 3.977 7 N -0.390 5.390 8 C 0.117 3.883 9 C -0.325 4.325 10 C -0.081 4.081 11 C -0.307 4.307 12 C 0.106 3.894 13 C -0.535 4.535 14 H 0.090 0.910 15 C -0.177 4.177 16 N -0.449 5.449 17 Si 0.802 3.198 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.286 4.286 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.223 0.777 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.609 6.758 -7.642 15.454 hybrid contribution -0.911 -0.714 0.727 1.367 sum -12.520 6.044 -6.916 15.528 Atomic orbital electron populations 1.22559 0.95541 1.02250 1.02943 1.20661 0.92647 0.94112 0.89870 1.21901 1.01442 0.94416 1.02364 1.58836 1.68002 1.06720 1.04316 1.21734 0.93770 1.01004 0.98235 1.21124 0.94190 0.95511 0.86893 1.44647 1.02703 1.65100 1.26567 1.17800 0.84212 0.92888 0.93360 1.20212 0.92818 1.16421 1.03063 1.20646 0.94868 0.96585 0.96039 1.21018 0.97615 1.13230 0.98812 1.17719 0.91824 0.88436 0.91469 1.19818 1.02568 1.20550 1.10583 0.91000 1.26725 0.93586 0.94208 1.03214 1.69935 1.15387 1.21344 1.38262 0.85234 0.79829 0.77979 0.76778 1.18747 1.19186 1.18323 1.20662 0.95888 1.11762 1.00250 0.91830 0.91477 0.92492 0.92966 0.91501 0.91801 0.84277 0.83776 0.91813 0.90955 0.93766 0.93142 0.77691 0.87364 0.86423 0.89123 0.90466 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 8.76 71.98 0.63 -1.84 16 2 C 0.12 2.19 0.91 3.53 0.00 2.20 16 3 C -0.14 -2.63 8.38 71.98 0.60 -2.03 16 4 N -0.85 -15.21 8.11 -151.55 -1.23 -16.44 16 5 C -0.11 -2.55 4.54 30.60 0.14 -2.41 16 6 C 0.15 4.64 4.40 86.38 0.38 5.02 16 7 N -0.76 -30.05 5.73 -339.55 -1.95 -32.00 16 8 C 0.22 10.75 6.64 38.16 0.25 11.00 16 9 C -0.30 -14.25 9.32 22.59 0.21 -14.04 16 10 C -0.06 -2.99 10.01 22.20 0.22 -2.77 16 11 C -0.29 -15.28 9.79 22.75 0.22 -15.06 16 12 C 0.11 6.29 5.57 -21.31 -0.12 6.17 16 13 C -0.51 -28.97 9.05 23.46 0.21 -28.76 16 14 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 15 C 0.04 1.97 5.14 85.25 0.44 2.41 16 16 N -0.82 -44.88 10.95 21.82 0.24 -44.64 16 17 Si 0.98 39.85 29.59 68.60 2.03 41.88 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 C -0.26 -14.57 8.53 22.86 0.19 -14.37 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 1.16 6.43 -2.39 -0.02 1.15 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.34 5.80 9.00 -89.70 -0.81 4.99 16 29 H 0.35 4.92 8.98 -89.70 -0.81 4.11 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.04 1.44 6.23 -2.39 -0.01 1.43 16 33 H 0.05 1.74 7.40 -2.38 -0.02 1.72 16 34 H 0.39 14.74 8.48 -92.71 -0.79 13.95 16 35 H 0.11 4.58 6.70 -2.91 -0.02 4.56 16 36 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.09 4.61 8.06 -2.91 -0.02 4.58 16 38 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 39 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 Total: -1.00 -63.83 315.46 1.15 -62.69 By element: Atomic # 1 Polarization: 44.33 SS G_CDS: -1.34 Total: 42.99 kcal Atomic # 6 Polarization: -57.88 SS G_CDS: 3.39 Total: -54.49 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -2.94 Total: -93.07 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -63.83 1.15 -62.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.221 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds