Wall clock time and date at job start Mon Mar 30 2020 06:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 H 1.08994 * 109.47372 * 306.04668 * 3 2 1 5 5 C 1.50700 * 109.47255 * 186.03776 * 3 2 1 6 6 H 1.07996 * 120.00260 * 243.89712 * 5 3 2 7 7 C 1.37878 * 119.99568 * 63.88966 * 5 3 2 8 8 N 1.31517 * 120.00142 * 197.57185 * 7 5 3 9 9 Si 1.86801 * 120.00227 * 17.57987 * 7 5 3 10 10 H 1.48498 * 109.47091 * 86.24674 * 9 7 5 11 11 H 1.48498 * 109.47058 * 206.25220 * 9 7 5 12 12 H 1.48502 * 109.46778 * 326.24915 * 9 7 5 13 13 N 1.46905 * 109.46769 * 66.04579 * 3 2 1 14 14 C 1.46901 * 110.99473 * 252.09048 * 13 3 2 15 15 C 1.50705 * 109.46792 * 184.99358 * 14 13 3 16 16 C 1.38228 * 119.61429 * 94.73378 * 15 14 13 17 17 C 1.38634 * 119.15994 * 179.71012 * 16 15 14 18 18 C 1.38675 * 118.41636 * 0.54618 * 17 16 15 19 19 C 1.50698 * 120.41649 * 179.71076 * 18 17 16 20 20 C 1.38178 * 119.16540 * 359.73529 * 18 17 16 21 21 C 1.50702 * 119.61857 * 180.02562 * 20 18 17 22 22 N 1.31851 * 119.62227 * 274.99801 * 15 14 13 23 23 H 1.08998 * 109.47210 * 55.49609 * 1 2 3 24 24 H 1.09001 * 109.47004 * 295.49475 * 1 2 3 25 25 H 1.09003 * 109.46942 * 175.49390 * 1 2 3 26 26 H 1.08999 * 109.46919 * 120.00813 * 2 1 3 27 27 H 1.09003 * 109.46932 * 240.00125 * 2 1 3 28 28 H 0.96993 * 120.00102 * 180.02562 * 8 7 5 29 29 H 1.00896 * 111.00106 * 16.03858 * 13 3 2 30 30 H 1.08997 * 109.47495 * 304.99471 * 14 13 3 31 31 H 1.09005 * 109.47441 * 64.99917 * 14 13 3 32 32 H 1.08002 * 120.42052 * 359.97438 * 16 15 14 33 33 H 1.07997 * 120.78625 * 180.25498 * 17 16 15 34 34 H 1.09000 * 109.47260 * 270.02273 * 19 18 17 35 35 H 1.09005 * 109.47069 * 30.02329 * 19 18 17 36 36 H 1.09001 * 109.47182 * 150.02491 * 19 18 17 37 37 H 1.09003 * 109.46770 * 269.97393 * 21 20 18 38 38 H 1.08998 * 109.47341 * 29.97185 * 21 20 18 39 39 H 1.09001 * 109.47547 * 149.97829 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5910 1.9866 -0.8308 5 6 3.5396 1.4451 -0.1494 6 1 4.1609 1.8279 0.6466 7 6 4.1183 0.9587 -1.3025 8 7 5.3932 0.6362 -1.3130 9 14 3.0915 0.7580 -2.8501 10 1 3.0724 2.0390 -3.6010 11 1 3.6817 -0.3061 -3.7012 12 1 1.7039 0.3816 -2.4780 13 7 1.6730 2.0915 1.2658 14 6 0.6035 3.0774 1.0610 15 6 0.3393 3.8075 2.3526 16 6 0.9656 5.0158 2.5947 17 6 0.7111 5.6823 3.7834 18 6 -0.1589 5.1004 4.6931 19 6 -0.4627 5.7825 6.0020 20 6 -0.7434 3.8869 4.3844 21 6 -1.6909 3.2457 5.3653 22 7 -0.4825 3.2840 3.2409 23 1 -0.3633 0.5821 -0.8469 24 1 -0.3633 0.4423 0.9276 25 1 -0.3633 -1.0245 -0.0807 26 1 1.8934 -0.5140 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 5.8004 0.2944 -2.1243 29 1 1.4069 1.4081 1.9587 30 1 0.9089 3.7913 0.2960 31 1 -0.3046 2.5671 0.7399 32 1 1.6413 5.4373 1.8653 33 1 1.1829 6.6298 3.9978 34 1 0.2525 5.4555 6.7568 35 1 -0.3883 6.8626 5.8748 36 1 -1.4720 5.5230 6.3214 37 1 -1.1313 2.5992 6.0414 38 1 -2.1981 4.0205 5.9402 39 1 -2.4286 2.6534 4.8239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314883904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:54 Heat of formation + Delta-G solvation = 24.199855 kcal Electronic energy + Delta-G solvation = -17904.426146 eV Core-core repulsion = 15232.484184 eV Total energy + Delta-G solvation = -2671.941963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27873 -36.80918 -34.25661 -32.89228 -32.19522 -31.11817 -28.42375 -28.14830 -26.47365 -23.86961 -22.45147 -22.06800 -20.85977 -19.85431 -16.80497 -16.50721 -15.70439 -15.15615 -14.84182 -14.66585 -14.29654 -13.94673 -13.33225 -13.09165 -12.95735 -12.78300 -12.63356 -12.56872 -12.09349 -12.03122 -11.89010 -11.66130 -11.48611 -11.20524 -10.82931 -10.61804 -10.37879 -9.89216 -9.55256 -9.51458 -9.31628 -9.18355 -8.48746 -8.33133 -7.30373 -6.03118 -3.93247 1.25444 1.44877 3.30940 3.39871 3.42134 3.87007 4.35471 4.47106 4.73949 4.84781 4.94929 5.03972 5.23069 5.32419 5.37983 5.50567 5.57166 5.61705 5.67616 5.68309 5.83349 5.86373 5.91567 5.94334 6.08653 6.09868 6.17530 6.36438 6.44772 6.57657 6.63045 6.79840 6.88989 6.93840 7.23294 7.81236 7.96072 8.22541 8.36016 8.76628 9.15877 9.64512 11.10408 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033955 B = 0.005096 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.424667 B = 5493.038233 C = 5911.010007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.148 4.148 3 C 0.194 3.806 4 H 0.020 0.980 5 C -0.500 4.500 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.857 3.143 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.255 1.255 13 N -0.665 5.665 14 C 0.106 3.894 15 C 0.146 3.854 16 C -0.153 4.153 17 C -0.077 4.077 18 C -0.151 4.151 19 C -0.108 4.108 20 C 0.122 3.878 21 C -0.104 4.104 22 N -0.480 5.480 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.262 0.738 29 H 0.332 0.668 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 8.210 11.006 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.187 4.187 3 C 0.086 3.914 4 H 0.038 0.962 5 C -0.538 4.538 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.684 3.316 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.180 1.180 13 N -0.296 5.296 14 C -0.024 4.024 15 C 0.008 3.992 16 C -0.173 4.173 17 C -0.103 4.103 18 C -0.154 4.154 19 C -0.165 4.165 20 C -0.016 4.016 21 C -0.161 4.161 22 N -0.190 5.190 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.579 7.795 10.653 18.937 hybrid contribution -0.623 0.091 -1.003 1.184 sum -14.202 7.886 9.650 18.894 Atomic orbital electron populations 1.21941 0.98393 1.00259 1.00716 1.22553 0.92799 1.01268 1.02066 1.19577 0.96745 0.88491 0.86592 0.96204 1.20990 0.89184 1.40442 1.03160 0.90215 1.24893 0.94727 0.94669 0.98632 1.69994 1.12206 1.42981 1.27965 0.87328 0.82004 0.77936 0.84364 1.20608 1.21555 1.17990 1.60647 1.37804 1.19273 1.11836 1.20930 0.94515 0.95790 0.91181 1.21345 0.90834 0.91876 0.95164 1.21985 1.00543 0.96491 0.98294 1.21435 0.96035 0.99555 0.93236 1.20611 0.99889 0.96892 0.97973 1.20754 1.02097 0.99873 0.93803 1.21038 0.96240 0.91546 0.92739 1.20739 0.97753 1.00634 0.96991 1.67319 1.15498 1.34121 1.02033 0.93737 0.93260 0.93958 0.92319 0.91951 0.92826 0.85091 0.89928 0.94292 0.84552 0.85186 0.91147 0.91733 0.91152 0.90577 0.90766 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.07 37.16 0.34 -2.49 16 2 C -0.15 -3.21 4.53 -26.73 -0.12 -3.33 16 3 C 0.19 4.57 1.73 -68.86 -0.12 4.45 16 4 H 0.02 0.48 6.23 -51.93 -0.32 0.16 16 5 C -0.50 -14.13 9.27 -34.44 -0.32 -14.45 16 6 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.07 2.08 5.29 -17.82 -0.09 1.99 16 8 N -0.89 -27.39 13.96 55.43 0.77 -26.62 16 9 Si 0.86 21.11 25.84 -169.99 -4.39 16.71 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -5.91 5.59 56.52 0.32 -5.59 16 13 N -0.66 -14.01 6.04 -109.22 -0.66 -14.67 16 14 C 0.11 1.92 5.48 -4.97 -0.03 1.89 16 15 C 0.15 2.45 6.34 -82.59 -0.52 1.93 16 16 C -0.15 -2.28 9.72 -39.44 -0.38 -2.67 16 17 C -0.08 -0.97 9.86 -39.27 -0.39 -1.36 16 18 C -0.15 -1.85 5.90 -104.48 -0.62 -2.46 16 19 C -0.11 -0.90 9.62 36.00 0.35 -0.56 16 20 C 0.12 1.68 6.78 -82.59 -0.56 1.12 16 21 C -0.10 -1.05 9.77 36.01 0.35 -0.70 16 22 N -0.48 -7.90 10.19 -5.74 -0.06 -7.96 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.85 6.72 -51.93 -0.35 0.50 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 27 H 0.06 1.44 4.99 -51.93 -0.26 1.18 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.33 6.84 7.75 -39.29 -0.30 6.54 16 30 H 0.08 1.46 7.92 -51.93 -0.41 1.05 16 31 H 0.04 0.69 6.79 -51.93 -0.35 0.34 16 32 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.07 0.49 5.96 -51.93 -0.31 0.18 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.57 5.94 -51.93 -0.31 0.26 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -31.32 310.81 -7.83 -39.15 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.06 Total: 5.34 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.12 Total: -16.64 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.06 Total: -49.24 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.39 Total: 16.71 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.32 -7.83 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314883904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.346 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds