Wall clock time and date at job start Mon Mar 30 2020 06:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 H 1.08994 * 109.47372 * 306.04668 * 3 2 1 5 5 C 1.50700 * 109.47255 * 186.03776 * 3 2 1 6 6 H 1.07996 * 120.00260 * 243.89712 * 5 3 2 7 7 C 1.37878 * 119.99568 * 63.88966 * 5 3 2 8 8 N 1.31517 * 120.00142 * 197.57185 * 7 5 3 9 9 Si 1.86801 * 120.00227 * 17.57987 * 7 5 3 10 10 H 1.48498 * 109.47091 * 86.24674 * 9 7 5 11 11 H 1.48498 * 109.47058 * 206.25220 * 9 7 5 12 12 H 1.48502 * 109.46778 * 326.24915 * 9 7 5 13 13 N 1.46905 * 109.46769 * 66.04579 * 3 2 1 14 14 C 1.46901 * 110.99473 * 252.09048 * 13 3 2 15 15 C 1.50705 * 109.46792 * 184.99358 * 14 13 3 16 16 C 1.38228 * 119.61429 * 94.73378 * 15 14 13 17 17 C 1.38634 * 119.15994 * 179.71012 * 16 15 14 18 18 C 1.38675 * 118.41636 * 0.54618 * 17 16 15 19 19 C 1.50698 * 120.41649 * 179.71076 * 18 17 16 20 20 C 1.38178 * 119.16540 * 359.73529 * 18 17 16 21 21 C 1.50702 * 119.61857 * 180.02562 * 20 18 17 22 22 N 1.31851 * 119.62227 * 274.99801 * 15 14 13 23 23 H 1.08998 * 109.47210 * 55.49609 * 1 2 3 24 24 H 1.09001 * 109.47004 * 295.49475 * 1 2 3 25 25 H 1.09003 * 109.46942 * 175.49390 * 1 2 3 26 26 H 1.08999 * 109.46919 * 120.00813 * 2 1 3 27 27 H 1.09003 * 109.46932 * 240.00125 * 2 1 3 28 28 H 0.96993 * 120.00102 * 180.02562 * 8 7 5 29 29 H 1.00896 * 111.00106 * 16.03858 * 13 3 2 30 30 H 1.08997 * 109.47495 * 304.99471 * 14 13 3 31 31 H 1.09005 * 109.47441 * 64.99917 * 14 13 3 32 32 H 1.08002 * 120.42052 * 359.97438 * 16 15 14 33 33 H 1.07997 * 120.78625 * 180.25498 * 17 16 15 34 34 H 1.09000 * 109.47260 * 270.02273 * 19 18 17 35 35 H 1.09005 * 109.47069 * 30.02329 * 19 18 17 36 36 H 1.09001 * 109.47182 * 150.02491 * 19 18 17 37 37 H 1.09003 * 109.46770 * 269.97393 * 21 20 18 38 38 H 1.08998 * 109.47341 * 29.97185 * 21 20 18 39 39 H 1.09001 * 109.47547 * 149.97829 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5910 1.9866 -0.8308 5 6 3.5396 1.4451 -0.1494 6 1 4.1609 1.8279 0.6466 7 6 4.1183 0.9587 -1.3025 8 7 5.3932 0.6362 -1.3130 9 14 3.0915 0.7580 -2.8501 10 1 3.0724 2.0390 -3.6010 11 1 3.6817 -0.3061 -3.7012 12 1 1.7039 0.3816 -2.4780 13 7 1.6730 2.0915 1.2658 14 6 0.6035 3.0774 1.0610 15 6 0.3393 3.8075 2.3526 16 6 0.9656 5.0158 2.5947 17 6 0.7111 5.6823 3.7834 18 6 -0.1589 5.1004 4.6931 19 6 -0.4627 5.7825 6.0020 20 6 -0.7434 3.8869 4.3844 21 6 -1.6909 3.2457 5.3653 22 7 -0.4825 3.2840 3.2409 23 1 -0.3633 0.5821 -0.8469 24 1 -0.3633 0.4423 0.9276 25 1 -0.3633 -1.0245 -0.0807 26 1 1.8934 -0.5140 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 5.8004 0.2944 -2.1243 29 1 1.4069 1.4081 1.9587 30 1 0.9089 3.7913 0.2960 31 1 -0.3046 2.5671 0.7399 32 1 1.6413 5.4373 1.8653 33 1 1.1829 6.6298 3.9978 34 1 0.2525 5.4555 6.7568 35 1 -0.3883 6.8626 5.8748 36 1 -1.4720 5.5230 6.3214 37 1 -1.1313 2.5992 6.0414 38 1 -2.1981 4.0205 5.9402 39 1 -2.4286 2.6534 4.8239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314883904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:54 Heat of formation + Delta-G solvation = 2.876107 kcal Electronic energy + Delta-G solvation = -17905.350814 eV Core-core repulsion = 15232.484184 eV Total energy + Delta-G solvation = -2672.866630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34574 -38.48654 -35.48207 -34.23480 -33.89006 -32.60869 -29.83083 -29.19081 -27.96820 -25.21272 -24.03140 -23.20348 -22.06996 -21.63649 -18.86181 -17.59296 -16.97957 -16.85848 -16.22511 -15.92511 -15.53297 -15.49212 -14.80239 -14.43758 -14.23631 -13.95054 -13.66403 -13.56407 -13.49549 -13.41224 -13.08134 -12.93690 -12.82645 -12.63134 -12.44759 -12.33622 -12.00880 -11.67723 -11.38747 -11.31982 -10.57845 -10.54388 -10.31640 -9.54542 -8.99137 -8.26470 -6.21765 0.17773 0.40023 1.35445 1.38561 1.47483 2.37780 2.75479 3.05624 3.28393 3.69856 3.86589 3.88931 4.06992 4.11496 4.27091 4.34903 4.42727 4.50047 4.55494 4.67796 4.70799 4.75718 4.80283 4.81941 4.89610 4.95305 5.07147 5.13461 5.15645 5.21691 5.29756 5.33935 5.44468 5.48415 5.74619 5.89483 6.05181 6.63687 6.75799 6.82719 7.13267 7.40410 8.91122 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033955 B = 0.005096 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.424667 B = 5493.038233 C = 5911.010007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.201 3.799 4 H 0.023 0.977 5 C -0.508 4.508 6 H 0.029 0.971 7 C 0.017 3.983 8 N -0.944 5.944 9 Si 0.925 3.075 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.228 1.228 13 N -0.676 5.676 14 C 0.113 3.887 15 C 0.118 3.882 16 C -0.169 4.169 17 C -0.079 4.079 18 C -0.146 4.146 19 C -0.106 4.106 20 C 0.104 3.896 21 C -0.101 4.101 22 N -0.504 5.504 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.264 0.736 29 H 0.332 0.668 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.135 0.865 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.562 9.015 11.875 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.184 4.184 3 C 0.092 3.908 4 H 0.041 0.959 5 C -0.546 4.546 6 H 0.047 0.953 7 C -0.181 4.181 8 N -0.584 5.584 9 Si 0.749 3.251 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.151 1.151 13 N -0.307 5.307 14 C -0.017 4.017 15 C -0.019 4.019 16 C -0.189 4.189 17 C -0.105 4.105 18 C -0.148 4.148 19 C -0.163 4.163 20 C -0.034 4.034 21 C -0.158 4.158 22 N -0.214 5.214 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.323 8.612 11.537 21.765 hybrid contribution 0.270 -0.081 -1.088 1.124 sum -16.053 8.532 10.449 20.968 Atomic orbital electron populations 1.21823 0.95101 1.01966 1.01327 1.22409 0.95646 0.99276 1.01115 1.19366 0.93541 0.90118 0.87824 0.95903 1.21248 0.91656 1.39807 1.01926 0.95268 1.25738 0.95901 0.94318 1.02105 1.70141 1.14516 1.44752 1.29032 0.86213 0.81473 0.78000 0.79390 1.20063 1.21431 1.15104 1.60456 1.39918 1.19540 1.10783 1.20841 0.93465 0.94918 0.92463 1.21137 0.92746 0.92855 0.95211 1.22100 1.00787 0.96463 0.99576 1.21815 0.95905 1.00446 0.92297 1.21097 0.98278 0.96179 0.99205 1.20855 1.03345 1.00500 0.91615 1.21710 0.96850 0.92383 0.92467 1.20833 0.97100 1.01453 0.96405 1.67263 1.15958 1.35090 1.03122 0.93162 0.92651 0.91668 0.93113 0.93174 0.92700 0.84995 0.90239 0.93830 0.84662 0.82267 0.90127 0.90110 0.89390 0.89880 0.87848 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.07 71.98 0.65 -4.24 16 2 C -0.15 -6.18 4.53 30.59 0.14 -6.04 16 3 C 0.20 9.48 1.73 44.17 0.08 9.56 16 4 H 0.02 1.08 6.23 -2.39 -0.01 1.07 16 5 C -0.51 -29.82 9.27 25.60 0.24 -29.58 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 7 C 0.02 0.99 5.29 84.65 0.45 1.44 16 8 N -0.94 -59.95 13.96 21.45 0.30 -59.65 16 9 Si 0.93 43.79 25.84 68.60 1.77 45.57 16 10 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.23 -9.71 5.59 99.48 0.56 -9.16 16 13 N -0.68 -29.01 6.04 -499.45 -3.02 -32.03 16 14 C 0.11 4.10 5.48 85.56 0.47 4.57 16 15 C 0.12 3.97 6.34 42.56 0.27 4.24 16 16 C -0.17 -5.02 9.72 22.36 0.22 -4.80 16 17 C -0.08 -1.86 9.86 22.47 0.22 -1.64 16 18 C -0.15 -3.18 5.90 -19.77 -0.12 -3.30 16 19 C -0.11 -1.35 9.62 71.24 0.69 -0.67 16 20 C 0.10 2.68 6.78 42.54 0.29 2.97 16 21 C -0.10 -1.79 9.77 71.24 0.70 -1.09 16 22 N -0.50 -16.29 10.19 -172.08 -1.75 -18.04 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.05 1.80 6.72 -2.39 -0.02 1.78 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 2.20 8.04 -2.39 -0.02 2.18 16 27 H 0.05 2.24 4.99 -2.39 -0.01 2.22 16 28 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.33 13.95 7.75 -89.70 -0.69 13.26 16 30 H 0.08 2.86 7.92 -2.39 -0.02 2.84 16 31 H 0.04 1.52 6.79 -2.38 -0.02 1.51 16 32 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 33 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.81 8.10 -2.38 -0.02 0.79 16 36 H 0.09 0.83 5.96 -2.39 -0.01 0.82 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 1.18 5.94 -2.39 -0.01 1.17 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -70.49 310.81 1.78 -68.70 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.19 Total: 24.04 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 4.28 Total: -28.60 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -4.47 Total: -109.72 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.77 Total: 45.57 kcal Total: -70.49 1.78 -68.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314883904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.581 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds