Wall clock time and date at job start Mon Mar 30 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47098 * 2 1 4 4 C 1.38677 * 120.41881 * 89.99960 * 3 2 1 5 5 C 1.38628 * 118.41857 * 179.97438 * 4 3 2 6 6 C 1.38215 * 119.16579 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.62061 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47048 * 94.97448 * 7 6 5 9 9 C 1.46894 * 111.00339 * 293.95515 * 8 7 6 10 10 C 1.46903 * 110.99918 * 169.99850 * 8 7 6 11 11 H 1.08997 * 109.47084 * 60.00357 * 10 8 7 12 12 C 1.52999 * 109.47505 * 300.00441 * 10 8 7 13 13 C 1.50697 * 109.47041 * 180.02562 * 10 8 7 14 14 H 1.07998 * 120.00314 * 0.02562 * 13 10 8 15 15 C 1.37884 * 120.00117 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99657 * 0.02562 * 15 13 10 17 17 Si 1.86792 * 120.00051 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47538 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47083 * 120.00072 * 17 15 13 20 20 H 1.48502 * 109.47413 * 239.99914 * 17 15 13 21 21 N 1.31854 * 120.76332 * 359.97438 * 6 5 4 22 22 C 1.31888 * 121.72838 * 0.02562 * 21 6 5 23 23 H 1.08995 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47281 * 299.99960 * 1 2 3 25 25 H 1.09001 * 109.46924 * 59.99900 * 1 2 3 26 26 H 1.09008 * 109.47576 * 240.00407 * 2 1 3 27 27 H 1.08994 * 109.47210 * 119.99868 * 2 1 3 28 28 H 1.08003 * 120.78604 * 359.96123 * 4 3 2 29 29 H 1.08004 * 120.41395 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47510 * 214.97316 * 7 6 5 31 31 H 1.09003 * 109.47264 * 334.98027 * 7 6 5 32 32 H 1.09005 * 109.46818 * 59.99924 * 9 8 7 33 33 H 1.09001 * 109.47233 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.46981 * 300.00205 * 9 8 7 35 35 H 1.08997 * 109.46881 * 300.00041 * 12 10 8 36 36 H 1.08995 * 109.47207 * 59.99501 * 12 10 8 37 37 H 1.08996 * 109.47550 * 179.97438 * 12 10 8 38 38 H 0.96998 * 119.99414 * 180.02562 * 16 15 13 39 39 H 1.07999 * 119.61890 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2663 2.0828 1.1959 5 6 2.7286 3.3889 1.1475 6 6 2.9390 3.9838 -0.0822 7 6 3.4419 5.4029 -0.1467 8 7 4.9041 5.3982 -0.2883 9 6 5.5478 4.8537 0.9146 10 6 5.4080 6.7444 -0.5914 11 1 5.1373 7.4241 0.2165 12 6 4.7899 7.2374 -1.9013 13 6 6.9080 6.7000 -0.7298 14 1 7.4343 5.7651 -0.6054 15 6 7.6085 7.8528 -1.0152 16 7 6.9676 8.9913 -1.1661 17 14 9.4677 7.7978 -1.1860 18 1 9.9438 6.4076 -0.9712 19 1 9.8533 8.2476 -2.5477 20 1 10.0845 8.6944 -0.1755 21 7 2.7056 3.3237 -1.1995 22 6 2.2655 2.0805 -1.1916 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.0923 1.5926 2.1424 29 1 2.9220 3.9345 2.0593 30 1 2.9956 5.9080 -1.0034 31 1 3.1672 5.9277 0.7683 32 1 5.2090 3.8303 1.0763 33 1 6.6298 4.8613 0.7828 34 1 5.2821 5.4649 1.7771 35 1 5.0606 6.5577 -2.7092 36 1 3.7050 7.2695 -1.8016 37 1 5.1634 8.2364 -2.1260 38 1 7.4604 9.8022 -1.3672 39 1 2.0853 1.5721 -2.1273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339018877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:36 Heat of formation + Delta-G solvation = 31.909429 kcal Electronic energy + Delta-G solvation = -17914.835589 eV Core-core repulsion = 15243.227938 eV Total energy + Delta-G solvation = -2671.607650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17990 -37.00011 -34.71380 -32.82812 -31.85868 -30.29715 -28.92642 -27.03733 -24.84952 -23.92474 -23.61561 -22.30693 -20.90226 -19.35562 -16.63878 -16.37127 -15.89491 -15.34062 -15.01772 -14.31247 -14.09146 -13.79981 -13.73050 -13.43106 -13.04934 -12.78074 -12.37090 -12.29844 -11.88288 -11.77964 -11.41172 -11.12598 -11.06375 -10.97991 -10.64058 -10.54477 -10.09029 -10.00487 -9.86624 -9.56949 -9.06824 -8.86335 -8.60040 -8.37107 -7.14358 -5.98632 -4.02664 1.28377 1.48583 3.31643 3.39436 3.44158 3.95268 4.43935 4.52045 4.74999 4.76144 4.96062 5.06502 5.17728 5.25340 5.31973 5.37015 5.37923 5.65614 5.68611 5.83408 5.85675 5.99262 6.02949 6.17797 6.28556 6.31779 6.37096 6.44992 6.78919 6.87824 6.95015 7.12863 7.19367 7.55382 7.75400 7.85970 8.23393 8.34137 8.35055 8.61891 9.03706 9.61973 11.08309 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045782 B = 0.004433 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.447769 B = 6314.984960 C = 6449.599175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.151 4.151 4 C -0.077 4.077 5 C -0.167 4.167 6 C 0.153 3.847 7 C 0.094 3.906 8 N -0.526 5.526 9 C 0.035 3.965 10 C 0.213 3.787 11 H -0.001 1.001 12 C -0.133 4.133 13 C -0.501 4.501 14 H 0.064 0.936 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.286 1.286 21 N -0.462 5.462 22 C 0.101 3.899 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.011 0.989 35 H 0.036 0.964 36 H 0.009 0.991 37 H 0.085 0.915 38 H 0.259 0.741 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 -14.113 4.426 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.153 4.153 4 C -0.103 4.103 5 C -0.187 4.187 6 C 0.015 3.985 7 C -0.035 4.035 8 N -0.251 5.251 9 C -0.114 4.114 10 C 0.107 3.893 11 H 0.017 0.983 12 C -0.191 4.191 13 C -0.540 4.540 14 H 0.082 0.918 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.212 1.212 21 N -0.171 5.171 22 C -0.056 4.056 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.111 0.889 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.028 0.972 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.925 -13.773 3.185 17.866 hybrid contribution 0.681 0.130 1.440 1.598 sum -10.244 -13.643 4.625 17.676 Atomic orbital electron populations 1.21755 0.94849 1.01560 1.02234 1.20415 0.95976 0.92201 1.02875 1.20826 1.02469 0.97595 0.94454 1.21361 0.96745 0.94307 0.97843 1.22008 1.01586 0.95904 0.99249 1.21385 0.92599 0.96715 0.87848 1.21056 0.91760 0.89373 1.01297 1.62100 1.00689 1.27689 1.34629 1.22281 1.01442 0.97034 0.90645 1.19277 0.94699 0.81906 0.93398 0.98350 1.21849 0.95260 1.03274 0.98706 1.21187 0.90764 0.94468 1.47572 0.91812 1.24929 0.98529 0.95416 0.95391 1.69907 1.35165 0.99009 1.49190 0.86463 0.85452 0.78007 0.77614 1.19770 1.21013 1.21183 1.67559 1.10117 1.08118 1.31275 1.22646 0.95075 0.90772 0.97132 0.92454 0.92705 0.92482 0.90860 0.91160 0.85459 0.85243 0.88878 0.94503 0.94048 0.90336 0.97076 0.94467 0.97216 0.89671 0.93062 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 37.15 0.37 -0.75 16 2 C -0.08 -0.66 6.09 -27.88 -0.17 -0.83 16 3 C -0.15 -1.81 5.15 -104.48 -0.54 -2.35 16 4 C -0.08 -0.94 9.86 -39.28 -0.39 -1.33 16 5 C -0.17 -2.41 8.36 -39.45 -0.33 -2.74 16 6 C 0.15 2.67 5.64 -82.59 -0.47 2.20 16 7 C 0.09 1.83 5.10 -4.98 -0.03 1.80 16 8 N -0.53 -11.86 4.61 -237.73 -1.10 -12.96 16 9 C 0.03 0.71 8.93 60.06 0.54 1.24 16 10 C 0.21 5.50 2.06 -68.87 -0.14 5.35 16 11 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 12 C -0.13 -3.35 8.76 37.16 0.33 -3.03 16 13 C -0.50 -13.95 7.88 -34.44 -0.27 -14.22 16 14 H 0.06 1.78 6.41 -52.49 -0.34 1.45 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -25.68 11.32 55.43 0.63 -25.06 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 N -0.46 -8.22 10.27 -9.48 -0.10 -8.32 16 22 C 0.10 1.44 10.86 -17.55 -0.19 1.24 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.58 8.09 -51.92 -0.42 0.16 16 27 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 29 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.09 1.89 5.83 -51.93 -0.30 1.59 16 31 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 32 H 0.04 0.76 6.40 -51.93 -0.33 0.43 16 33 H 0.08 1.72 6.10 -51.93 -0.32 1.40 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.01 0.21 6.20 -51.93 -0.32 -0.12 16 37 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -30.28 313.51 -8.37 -38.65 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.12 Total: -1.70 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.39 Total: -11.88 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.57 Total: -46.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.28 -8.37 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.560 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds