Wall clock time and date at job start Mon Mar 30 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47098 * 2 1 4 4 C 1.38677 * 120.41881 * 89.99960 * 3 2 1 5 5 C 1.38628 * 118.41857 * 179.97438 * 4 3 2 6 6 C 1.38215 * 119.16579 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.62061 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47048 * 94.97448 * 7 6 5 9 9 C 1.46894 * 111.00339 * 293.95515 * 8 7 6 10 10 C 1.46903 * 110.99918 * 169.99850 * 8 7 6 11 11 H 1.08997 * 109.47084 * 60.00357 * 10 8 7 12 12 C 1.52999 * 109.47505 * 300.00441 * 10 8 7 13 13 C 1.50697 * 109.47041 * 180.02562 * 10 8 7 14 14 H 1.07998 * 120.00314 * 0.02562 * 13 10 8 15 15 C 1.37884 * 120.00117 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99657 * 0.02562 * 15 13 10 17 17 Si 1.86792 * 120.00051 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47538 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47083 * 120.00072 * 17 15 13 20 20 H 1.48502 * 109.47413 * 239.99914 * 17 15 13 21 21 N 1.31854 * 120.76332 * 359.97438 * 6 5 4 22 22 C 1.31888 * 121.72838 * 0.02562 * 21 6 5 23 23 H 1.08995 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47281 * 299.99960 * 1 2 3 25 25 H 1.09001 * 109.46924 * 59.99900 * 1 2 3 26 26 H 1.09008 * 109.47576 * 240.00407 * 2 1 3 27 27 H 1.08994 * 109.47210 * 119.99868 * 2 1 3 28 28 H 1.08003 * 120.78604 * 359.96123 * 4 3 2 29 29 H 1.08004 * 120.41395 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47510 * 214.97316 * 7 6 5 31 31 H 1.09003 * 109.47264 * 334.98027 * 7 6 5 32 32 H 1.09005 * 109.46818 * 59.99924 * 9 8 7 33 33 H 1.09001 * 109.47233 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.46981 * 300.00205 * 9 8 7 35 35 H 1.08997 * 109.46881 * 300.00041 * 12 10 8 36 36 H 1.08995 * 109.47207 * 59.99501 * 12 10 8 37 37 H 1.08996 * 109.47550 * 179.97438 * 12 10 8 38 38 H 0.96998 * 119.99414 * 180.02562 * 16 15 13 39 39 H 1.07999 * 119.61890 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2663 2.0828 1.1959 5 6 2.7286 3.3889 1.1475 6 6 2.9390 3.9838 -0.0822 7 6 3.4419 5.4029 -0.1467 8 7 4.9041 5.3982 -0.2883 9 6 5.5478 4.8537 0.9146 10 6 5.4080 6.7444 -0.5914 11 1 5.1373 7.4241 0.2165 12 6 4.7899 7.2374 -1.9013 13 6 6.9080 6.7000 -0.7298 14 1 7.4343 5.7651 -0.6054 15 6 7.6085 7.8528 -1.0152 16 7 6.9676 8.9913 -1.1661 17 14 9.4677 7.7978 -1.1860 18 1 9.9438 6.4076 -0.9712 19 1 9.8533 8.2476 -2.5477 20 1 10.0845 8.6944 -0.1755 21 7 2.7056 3.3237 -1.1995 22 6 2.2655 2.0805 -1.1916 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.0923 1.5926 2.1424 29 1 2.9220 3.9345 2.0593 30 1 2.9956 5.9080 -1.0034 31 1 3.1672 5.9277 0.7683 32 1 5.2090 3.8303 1.0763 33 1 6.6298 4.8613 0.7828 34 1 5.2821 5.4649 1.7771 35 1 5.0606 6.5577 -2.7092 36 1 3.7050 7.2695 -1.8016 37 1 5.1634 8.2364 -2.1260 38 1 7.4604 9.8022 -1.3672 39 1 2.0853 1.5721 -2.1273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339018877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:35 Heat of formation + Delta-G solvation = 13.242385 kcal Electronic energy + Delta-G solvation = -17915.645052 eV Core-core repulsion = 15243.227938 eV Total energy + Delta-G solvation = -2672.417114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.30754 -38.70617 -35.77162 -34.70268 -33.00604 -31.63141 -30.68573 -28.50453 -26.73025 -25.41897 -24.65493 -23.58936 -22.00722 -21.18267 -18.45162 -17.64033 -17.35685 -16.80135 -16.20783 -15.99240 -15.66438 -15.10771 -14.74408 -14.64441 -14.28644 -14.20876 -13.79497 -13.65238 -13.35261 -12.97588 -12.90559 -12.79729 -12.56626 -12.41589 -12.14671 -12.11839 -11.96334 -11.85771 -11.65213 -10.90925 -10.65209 -10.53299 -10.21609 -9.69061 -8.93590 -8.11678 -6.23399 0.18456 0.44074 1.41009 1.42978 1.54892 2.41993 2.80410 3.16696 3.38578 3.52952 3.88531 3.89086 4.07069 4.10520 4.34326 4.45296 4.53087 4.55496 4.59718 4.67811 4.70169 4.82186 4.89678 5.00238 5.02619 5.06876 5.09961 5.12555 5.21531 5.26940 5.41597 5.46552 5.48346 5.71118 5.76432 5.86145 6.24061 6.37850 6.69072 6.90432 7.20098 7.45382 8.94762 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045782 B = 0.004433 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.447769 B = 6314.984960 C = 6449.599175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.137 4.137 4 C -0.073 4.073 5 C -0.168 4.168 6 C 0.123 3.877 7 C 0.099 3.901 8 N -0.538 5.538 9 C 0.043 3.957 10 C 0.218 3.782 11 H -0.031 1.031 12 C -0.120 4.120 13 C -0.519 4.519 14 H 0.058 0.942 15 C 0.011 3.989 16 N -0.920 5.920 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.279 1.279 21 N -0.502 5.502 22 C 0.086 3.914 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.163 0.837 29 H 0.142 0.858 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.016 0.984 35 H 0.026 0.974 36 H 0.028 0.972 37 H 0.063 0.937 38 H 0.262 0.738 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 -16.547 5.412 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.139 4.139 4 C -0.099 4.099 5 C -0.188 4.188 6 C -0.014 4.014 7 C -0.030 4.030 8 N -0.263 5.263 9 C -0.106 4.106 10 C 0.111 3.889 11 H -0.013 1.013 12 C -0.178 4.178 13 C -0.557 4.557 14 H 0.076 0.924 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.787 3.213 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.204 1.204 21 N -0.211 5.211 22 C -0.072 4.072 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.181 0.819 29 H 0.160 0.840 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.320 -16.220 4.179 20.216 hybrid contribution 0.693 0.785 1.139 1.547 sum -10.628 -15.435 5.318 19.480 Atomic orbital electron populations 1.21740 0.93964 1.02663 1.01828 1.20511 0.96545 0.89889 1.04280 1.21224 1.00114 0.98994 0.93545 1.21776 0.95303 0.93343 0.99483 1.22126 1.01296 0.96977 0.98398 1.21046 0.95322 0.95866 0.89205 1.20959 0.89608 0.91613 1.00788 1.61999 1.02853 1.25407 1.36045 1.22198 1.00101 0.98246 0.90019 1.19061 0.94158 0.83242 0.92428 1.01345 1.21659 0.96425 1.01506 0.98198 1.21429 0.91983 0.94415 1.47888 0.92407 1.25719 1.03032 0.95019 0.94955 1.70026 1.36851 0.99543 1.49568 0.85446 0.79990 0.78153 0.77666 1.19303 1.20624 1.20426 1.67416 1.11558 1.09992 1.32133 1.23044 0.95153 0.89928 0.99055 0.90639 0.92828 0.93235 0.89853 0.89439 0.81926 0.84027 0.90634 0.93755 0.91770 0.92220 0.96549 0.95502 0.95297 0.91870 0.92868 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.89 71.98 0.71 -1.01 16 2 C -0.07 -1.00 6.09 29.85 0.18 -0.82 16 3 C -0.14 -2.88 5.15 -19.77 -0.10 -2.98 16 4 C -0.07 -1.56 9.86 22.47 0.22 -1.34 16 5 C -0.17 -4.53 8.36 22.36 0.19 -4.35 16 6 C 0.12 4.25 5.64 42.55 0.24 4.49 16 7 C 0.10 3.91 5.10 85.56 0.44 4.35 16 8 N -0.54 -24.71 4.61 -906.04 -4.18 -28.89 16 9 C 0.04 1.74 8.93 127.69 1.14 2.88 16 10 C 0.22 11.60 2.06 44.17 0.09 11.70 16 11 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 16 12 C -0.12 -6.25 8.76 71.98 0.63 -5.62 16 13 C -0.52 -29.48 7.88 25.60 0.20 -29.28 16 14 H 0.06 3.29 6.41 -2.91 -0.02 3.27 16 15 C 0.01 0.64 5.30 84.66 0.45 1.09 16 16 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 17 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 N -0.50 -17.74 10.27 -183.89 -1.89 -19.63 16 22 C 0.09 2.30 10.86 84.67 0.92 3.22 16 23 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 27 H 0.09 0.94 8.09 -2.39 -0.02 0.92 16 28 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.08 3.18 5.83 -2.39 -0.01 3.17 16 31 H 0.04 1.65 8.02 -2.39 -0.02 1.63 16 32 H 0.06 2.30 6.40 -2.38 -0.02 2.28 16 33 H 0.06 2.64 6.10 -2.39 -0.01 2.62 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.03 1.34 6.20 -2.39 -0.01 1.33 16 37 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.17 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -66.33 313.51 2.52 -63.81 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.01 Total: 9.46 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 5.31 Total: -17.67 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -5.83 Total: -102.18 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.33 2.52 -63.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.054 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds