Wall clock time and date at job start Mon Mar 30 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46922 * 2 1 4 4 C 1.38665 * 120.42087 * 90.00296 * 3 2 1 5 5 C 1.38635 * 118.42109 * 180.02562 * 4 3 2 6 6 C 1.38221 * 119.16284 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.62046 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47188 * 95.00331 * 7 6 5 9 9 C 1.46902 * 111.00569 * 66.04670 * 8 7 6 10 10 C 1.46909 * 110.99920 * 190.00170 * 8 7 6 11 11 H 1.08996 * 109.46716 * 299.99459 * 10 8 7 12 12 C 1.52998 * 109.47158 * 59.99589 * 10 8 7 13 13 C 1.50695 * 109.46849 * 179.97438 * 10 8 7 14 14 H 1.08003 * 120.00558 * 359.97438 * 13 10 8 15 15 C 1.37887 * 119.99953 * 179.97438 * 13 10 8 16 16 N 1.31512 * 119.99355 * 0.02562 * 15 13 10 17 17 Si 1.86793 * 120.00089 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47489 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46999 * 120.00486 * 17 15 13 20 20 H 1.48499 * 109.47305 * 239.99938 * 17 15 13 21 21 N 1.31862 * 120.76221 * 359.97438 * 6 5 4 22 22 C 1.31881 * 121.72315 * 0.04192 * 21 6 5 23 23 H 1.09000 * 109.47167 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46848 * 300.00664 * 1 2 3 25 25 H 1.08999 * 109.46862 * 60.00044 * 1 2 3 26 26 H 1.08996 * 109.46645 * 239.99966 * 2 1 3 27 27 H 1.08999 * 109.46862 * 119.99956 * 2 1 3 28 28 H 1.08003 * 120.79081 * 359.97438 * 4 3 2 29 29 H 1.08004 * 120.41715 * 179.72666 * 5 4 3 30 30 H 1.09005 * 109.47397 * 215.00374 * 7 6 5 31 31 H 1.09002 * 109.46954 * 334.99807 * 7 6 5 32 32 H 1.08996 * 109.47040 * 59.99634 * 9 8 7 33 33 H 1.08995 * 109.47029 * 180.02562 * 9 8 7 34 34 H 1.09004 * 109.46464 * 300.00484 * 9 8 7 35 35 H 1.08994 * 109.47220 * 179.97438 * 12 10 8 36 36 H 1.09000 * 109.47350 * 300.00227 * 12 10 8 37 37 H 1.09006 * 109.46925 * 60.00198 * 12 10 8 38 38 H 0.97004 * 119.99589 * 180.02562 * 16 15 13 39 39 H 1.08011 * 119.61586 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2664 2.0828 1.1957 5 6 2.7277 3.3892 1.1474 6 6 2.9380 3.9842 -0.0824 7 6 3.4398 5.4037 -0.1470 8 7 4.9019 5.4002 -0.2887 9 6 5.3043 4.8282 -1.5806 10 6 5.4506 6.7522 -0.1178 11 1 5.0278 7.4140 -0.8736 12 6 5.0939 7.2750 1.2751 13 6 6.9493 6.7088 -0.2690 14 1 7.4448 5.7707 -0.4714 15 6 7.6881 7.8668 -0.1490 16 7 7.0848 9.0090 0.0979 17 14 9.5459 7.8130 -0.3357 18 1 9.9760 6.4179 -0.6073 19 1 9.9554 8.6855 -1.4655 20 1 10.1834 8.2930 0.9166 21 7 2.7055 3.3237 -1.1997 22 6 2.2662 2.0802 -1.1916 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0927 1.5925 2.1423 29 1 2.9165 3.9366 2.0591 30 1 2.9929 5.9084 -1.0036 31 1 3.1646 5.9283 0.7680 32 1 4.8762 5.4204 -2.3893 33 1 6.3914 4.8373 -1.6591 34 1 4.9438 3.8020 -1.6515 35 1 5.5013 8.2779 1.4021 36 1 4.0099 7.3063 1.3849 37 1 5.5167 6.6131 2.0309 38 1 7.6045 9.8238 0.1820 39 1 2.0867 1.5714 -2.1274 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339018878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:38 Heat of formation + Delta-G solvation = 14.352814 kcal Electronic energy + Delta-G solvation = -17919.957623 eV Core-core repulsion = 15247.588660 eV Total energy + Delta-G solvation = -2672.368962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30365 -38.69056 -35.77926 -34.64814 -33.02529 -31.65173 -30.69424 -28.47919 -26.72235 -25.41181 -24.54781 -23.66975 -22.01711 -21.18120 -18.44585 -17.71006 -17.20158 -16.89447 -16.16652 -15.97441 -15.74281 -15.11315 -14.74746 -14.59939 -14.30736 -14.06863 -13.96730 -13.58451 -13.29335 -12.95716 -12.86997 -12.78061 -12.55970 -12.45384 -12.13276 -12.10161 -11.96587 -11.84558 -11.69216 -10.91054 -10.63758 -10.53092 -10.26373 -9.68983 -8.99457 -8.11938 -6.23627 0.20186 0.43678 1.41213 1.42705 1.54920 2.41943 2.79167 3.16513 3.34787 3.63698 3.82421 3.89956 4.07264 4.11476 4.38418 4.48137 4.55357 4.55524 4.60244 4.68226 4.74481 4.83445 4.92844 4.98093 5.03955 5.07022 5.10968 5.14455 5.21654 5.32416 5.41611 5.47307 5.49801 5.71223 5.76624 5.87425 6.24264 6.34208 6.67003 6.89734 7.14438 7.45178 8.94442 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.046213 B = 0.004445 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.740869 B = 6297.585735 C = 6483.633391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.136 4.136 4 C -0.075 4.075 5 C -0.157 4.157 6 C 0.119 3.881 7 C 0.100 3.900 8 N -0.533 5.533 9 C 0.053 3.947 10 C 0.215 3.785 11 H -0.038 1.038 12 C -0.121 4.121 13 C -0.520 4.520 14 H 0.057 0.943 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.961 3.039 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.277 1.277 21 N -0.507 5.507 22 C 0.085 3.915 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.161 0.839 29 H 0.142 0.858 30 H 0.024 0.976 31 H 0.094 0.906 32 H 0.002 0.998 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 -16.629 1.998 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.138 4.138 4 C -0.101 4.101 5 C -0.177 4.177 6 C -0.018 4.018 7 C -0.029 4.029 8 N -0.258 5.258 9 C -0.096 4.096 10 C 0.108 3.892 11 H -0.021 1.021 12 C -0.179 4.179 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.187 4.187 16 N -0.559 5.559 17 Si 0.787 3.213 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.203 1.203 21 N -0.217 5.217 22 C -0.072 4.072 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.179 0.821 29 H 0.160 0.840 30 H 0.042 0.958 31 H 0.112 0.888 32 H 0.020 0.980 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.602 -16.290 1.598 20.063 hybrid contribution 0.567 0.789 -0.154 0.984 sum -11.035 -15.501 1.443 19.082 Atomic orbital electron populations 1.21743 0.93971 1.02648 1.01821 1.20510 0.96534 0.89912 1.04269 1.21206 1.00085 0.98974 0.93547 1.21790 0.95359 0.93378 0.99536 1.22089 1.00251 0.96795 0.98605 1.21036 0.95423 0.95890 0.89408 1.21009 0.89026 0.91547 1.01286 1.62121 1.07480 1.24059 1.32114 1.22075 1.00386 0.98270 0.88866 1.19108 0.93888 0.83110 0.93079 1.02071 1.21674 0.97267 1.01793 0.97201 1.21429 0.92116 0.94027 1.48219 0.92460 1.25709 1.03080 0.95009 0.94884 1.70024 1.36848 0.99116 1.49952 0.85451 0.80015 0.78118 0.77710 1.19351 1.20701 1.20299 1.67449 1.12286 1.10062 1.31864 1.23020 0.95284 0.89896 0.99012 0.90657 0.92904 0.93165 0.89741 0.89579 0.82107 0.84036 0.95795 0.88764 0.97972 0.92402 0.91816 0.91941 0.94733 0.94588 0.92858 0.81338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.90 71.98 0.71 -0.99 16 2 C -0.07 -0.99 6.09 29.85 0.18 -0.81 16 3 C -0.14 -2.85 5.15 -19.77 -0.10 -2.95 16 4 C -0.07 -1.65 9.86 22.47 0.22 -1.42 16 5 C -0.16 -4.44 9.72 22.36 0.22 -4.22 16 6 C 0.12 4.11 5.70 42.55 0.24 4.35 16 7 C 0.10 3.96 5.09 85.56 0.44 4.39 16 8 N -0.53 -24.60 4.61 -906.05 -4.18 -28.78 16 9 C 0.05 2.35 8.97 127.69 1.15 3.50 16 10 C 0.21 11.40 2.06 44.17 0.09 11.49 16 11 H -0.04 -2.27 8.14 -2.39 -0.02 -2.29 16 12 C -0.12 -6.00 8.76 71.98 0.63 -5.37 16 13 C -0.52 -29.49 7.88 25.60 0.20 -29.28 16 14 H 0.06 3.26 6.41 -2.91 -0.02 3.24 16 15 C 0.01 0.66 5.30 84.66 0.45 1.11 16 16 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 17 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 N -0.51 -17.04 8.84 -183.88 -1.63 -18.67 16 22 C 0.09 2.19 10.86 84.67 0.92 3.11 16 23 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 27 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 28 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.02 1.01 8.12 -2.38 -0.02 0.99 16 31 H 0.09 3.53 5.73 -2.39 -0.01 3.51 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.06 2.71 6.10 -2.39 -0.01 2.70 16 34 H 0.06 2.64 6.35 -2.38 -0.02 2.62 16 35 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 36 H 0.03 1.48 6.20 -2.39 -0.01 1.46 16 37 H 0.03 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -65.25 313.48 2.82 -62.43 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.01 Total: 9.02 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 5.35 Total: -17.10 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -5.56 Total: -100.84 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.25 2.82 -62.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.781 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds