Wall clock time and date at job start Mon Mar 30 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38672 * 120.78444 * 2 1 4 4 C 1.38189 * 119.16216 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76185 * 0.02562 * 4 3 2 6 6 C 1.31852 * 121.72978 * 359.68970 * 5 4 3 7 7 C 1.38229 * 120.76142 * 0.57682 * 6 5 4 8 8 C 1.50701 * 120.41899 * 179.73412 * 7 6 5 9 9 N 1.46902 * 109.47232 * 105.23789 * 8 7 6 10 10 C 1.46896 * 111.00262 * 287.83673 * 9 8 7 11 11 C 1.46901 * 111.00051 * 163.87802 * 9 8 7 12 12 C 1.52992 * 109.47148 * 190.00239 * 11 9 8 13 13 C 1.53004 * 109.47239 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47220 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00164 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00032 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00242 * 179.97438 * 16 14 13 18 18 Si 1.86811 * 119.99947 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46681 * 89.99661 * 18 16 14 20 20 H 1.48499 * 109.46794 * 209.99929 * 18 16 14 21 21 H 1.48493 * 109.46834 * 329.99785 * 18 16 14 22 22 H 1.09002 * 109.47038 * 263.76567 * 1 2 3 23 23 H 1.08997 * 109.47361 * 23.77341 * 1 2 3 24 24 H 1.09005 * 109.46906 * 143.77368 * 1 2 3 25 25 H 1.08004 * 120.42267 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.61592 * 180.02562 * 4 3 2 27 27 H 1.07994 * 119.62173 * 180.29030 * 6 5 4 28 28 H 1.08996 * 109.46912 * 345.23952 * 8 7 6 29 29 H 1.09005 * 109.46851 * 225.23706 * 8 7 6 30 30 H 1.08998 * 109.46746 * 291.69050 * 10 9 8 31 31 H 1.08998 * 109.47050 * 51.68464 * 10 9 8 32 32 H 1.08998 * 109.47521 * 171.68734 * 10 9 8 33 33 H 1.09006 * 109.47238 * 310.00215 * 11 9 8 34 34 H 1.09002 * 109.46678 * 69.99854 * 11 9 8 35 35 H 1.09004 * 109.47509 * 300.00322 * 12 11 9 36 36 H 1.09002 * 109.47645 * 60.00208 * 12 11 9 37 37 H 1.09006 * 109.46867 * 299.99805 * 13 12 11 38 38 H 1.08994 * 109.47192 * 59.99613 * 13 12 11 39 39 H 0.97001 * 120.00307 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1913 0.0000 4 6 3.5981 1.1522 -0.0005 5 7 4.2403 0.0003 -0.0016 6 6 3.5984 -1.1514 0.0040 7 6 2.2167 -1.1908 -0.0009 8 6 1.4910 -2.5116 -0.0005 9 7 0.9314 -2.7625 1.3344 10 6 1.9915 -3.0931 2.2960 11 6 -0.0863 -3.8209 1.2882 12 6 -0.8186 -3.8832 2.6300 13 6 -1.8781 -4.9860 2.5821 14 6 -2.5990 -5.0478 3.9041 15 1 -2.3282 -4.3687 4.6991 16 6 -3.6042 -5.9712 4.0986 17 7 -4.2329 -6.0254 5.2524 18 14 -4.0720 -7.1462 2.7238 19 1 -3.2555 -8.3820 2.8297 20 1 -5.5116 -7.4926 2.8372 21 1 -3.8208 -6.4978 1.4117 22 1 -0.3633 -0.1116 1.0216 23 1 -0.3634 0.9404 -0.4143 24 1 -0.3633 -0.8291 -0.6074 25 1 1.6966 2.1378 0.0004 26 1 4.1582 2.0756 -0.0001 27 1 4.1586 -2.0747 0.0077 28 1 2.1879 -3.3091 -0.2581 29 1 0.6844 -2.4831 -0.7332 30 1 2.4191 -4.0640 2.0458 31 1 2.7702 -2.3316 2.2544 32 1 1.5719 -3.1290 3.3014 33 1 -0.8007 -3.6036 0.4941 34 1 0.3948 -4.7791 1.0918 35 1 -0.1042 -4.1005 3.4241 36 1 -1.2996 -2.9250 2.8263 37 1 -2.5926 -4.7690 1.7880 38 1 -1.3968 -5.9440 2.3860 39 1 -4.9399 -6.6753 5.3895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361422431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:45 Heat of formation + Delta-G solvation = 22.371400 kcal Electronic energy + Delta-G solvation = -17632.432944 eV Core-core repulsion = 14960.411693 eV Total energy + Delta-G solvation = -2672.021250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48396 -37.63207 -34.37226 -33.56307 -32.15651 -31.04195 -28.16425 -27.41624 -27.06154 -24.32227 -22.74157 -21.87143 -20.69483 -19.94274 -16.80535 -16.72854 -16.48450 -15.61508 -15.42483 -15.12388 -14.25939 -14.02005 -13.94379 -13.63354 -13.10060 -12.88233 -12.70091 -12.66945 -12.51177 -11.93292 -11.84902 -11.65210 -11.51599 -11.30525 -10.95123 -10.70001 -9.96408 -9.72947 -9.66276 -9.49968 -9.44301 -9.17529 -9.08523 -8.53368 -8.19777 -6.03587 -4.01400 0.99055 1.19115 3.30149 3.37603 3.40875 3.62570 4.16919 4.33091 4.45274 4.61696 4.64857 4.80008 4.92215 5.23150 5.30092 5.31119 5.37358 5.41607 5.50378 5.55589 5.65179 5.71570 5.77054 5.82636 5.94943 6.07532 6.08975 6.15507 6.33980 6.52164 6.55556 6.62376 6.89446 7.17479 7.21418 7.35484 7.45809 7.80844 7.86567 8.55610 9.02033 9.59006 11.10015 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.043009 B = 0.003935 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.867357 B = 7113.898801 C = 7218.821143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.015 4.015 3 C -0.179 4.179 4 C 0.094 3.906 5 N -0.494 5.494 6 C 0.104 3.896 7 C -0.128 4.128 8 C 0.095 3.905 9 N -0.535 5.535 10 C 0.023 3.977 11 C 0.053 3.947 12 C -0.097 4.097 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 H 0.089 0.911 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.132 0.868 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.025 0.975 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.008 0.992 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.230 11.517 -13.114 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.023 4.023 3 C -0.199 4.199 4 C -0.063 4.063 5 N -0.202 5.202 6 C -0.053 4.053 7 C -0.130 4.130 8 C -0.034 4.034 9 N -0.259 5.259 10 C -0.125 4.125 11 C -0.074 4.074 12 C -0.135 4.135 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 H 0.107 0.893 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.150 0.850 26 H 0.169 0.831 27 H 0.167 0.833 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.766 11.847 -12.864 22.256 hybrid contribution -0.817 -1.418 -0.810 1.826 sum 12.949 10.429 -13.674 21.527 Atomic orbital electron populations 1.20814 0.89813 1.02271 1.04038 1.20224 0.97125 0.92058 0.92899 1.22059 0.95575 0.98683 1.03543 1.22681 0.91831 0.96133 0.95635 1.67658 1.41194 0.98469 1.12920 1.22639 0.91117 0.96137 0.95457 1.20709 0.94616 0.95794 1.01891 1.20948 0.97846 0.92319 0.92259 1.62028 1.13414 1.44486 1.05936 1.22421 0.93936 0.98634 0.97487 1.22376 0.93259 0.91072 1.00645 1.21462 0.97694 1.00540 0.93757 1.19552 0.94100 0.93616 0.97827 1.21144 1.17460 1.18783 0.98245 0.91056 1.25045 0.95937 0.97181 0.95423 1.69918 1.24489 1.36462 1.23518 0.86770 0.77573 0.81550 0.83325 1.20385 1.21414 1.19043 0.89273 0.91928 0.90948 0.84990 0.83096 0.83322 0.93883 0.89732 0.95665 0.92209 0.90535 0.91247 0.95215 0.92837 0.92014 0.96676 0.97340 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.51 36.01 0.34 -0.79 16 2 C -0.01 -0.16 5.92 -104.32 -0.62 -0.78 16 3 C -0.18 -1.76 9.80 -39.44 -0.39 -2.15 16 4 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 5 N -0.49 -6.02 10.36 -13.25 -0.14 -6.16 16 6 C 0.10 1.19 10.15 -17.55 -0.18 1.01 16 7 C -0.13 -1.45 4.69 -104.48 -0.49 -1.94 16 8 C 0.09 1.07 4.49 -4.97 -0.02 1.05 16 9 N -0.53 -7.26 4.64 -244.37 -1.13 -8.39 16 10 C 0.02 0.31 9.11 60.06 0.55 0.85 16 11 C 0.05 0.83 4.95 -3.83 -0.02 0.81 16 12 C -0.10 -1.88 5.07 -26.73 -0.14 -2.01 16 13 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 14 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 18 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 24 H 0.07 0.72 6.64 -51.93 -0.34 0.37 16 25 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 26 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.15 1.44 8.00 -52.49 -0.42 1.02 16 28 H 0.04 0.45 7.87 -51.93 -0.41 0.05 16 29 H 0.08 0.91 6.53 -51.93 -0.34 0.57 16 30 H 0.02 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.06 0.74 6.76 -51.93 -0.35 0.39 16 32 H 0.08 1.09 6.68 -51.93 -0.35 0.74 16 33 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 34 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.05 1.05 6.65 -51.93 -0.35 0.71 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 38 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -31.46 315.92 -8.37 -39.84 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -6.27 Total: -2.86 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -1.70 Total: -16.95 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.50 Total: -41.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.46 -8.37 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361422431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.206 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds