Wall clock time and date at job start Mon Mar 30 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47009 * 2 1 4 4 C 1.38678 * 120.41793 * 90.00226 * 3 2 1 5 5 C 1.38627 * 118.41973 * 180.02562 * 4 3 2 6 6 C 1.38224 * 119.16190 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.61455 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47161 * 95.00333 * 7 6 5 9 9 C 1.36941 * 119.99680 * 269.99720 * 8 7 6 10 10 H 1.07995 * 119.99566 * 144.76313 * 9 8 7 11 11 C 1.38812 * 119.99790 * 324.75871 * 9 8 7 12 12 N 1.31619 * 119.99645 * 157.32551 * 11 9 8 13 13 Si 1.86796 * 120.00078 * 337.31781 * 11 9 8 14 14 H 1.48504 * 109.47057 * 95.35482 * 13 11 9 15 15 H 1.48509 * 109.47164 * 215.35164 * 13 11 9 16 16 H 1.48501 * 109.47574 * 335.35330 * 13 11 9 17 17 C 1.46496 * 120.00304 * 89.99841 * 8 7 6 18 18 C 1.52995 * 109.47489 * 121.36847 * 17 8 7 19 19 C 1.53002 * 109.47078 * 241.37059 * 17 8 7 20 20 N 1.31856 * 120.76583 * 359.97438 * 6 5 4 21 21 C 1.31885 * 121.72103 * 359.70622 * 20 6 5 22 22 H 1.09003 * 109.46944 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46952 * 299.99559 * 1 2 3 24 24 H 1.08993 * 109.47485 * 59.99540 * 1 2 3 25 25 H 1.09004 * 109.46952 * 240.00441 * 2 1 3 26 26 H 1.08993 * 109.47485 * 120.00460 * 2 1 3 27 27 H 1.08000 * 120.78782 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.41965 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47122 * 214.99663 * 7 6 5 30 30 H 1.08993 * 109.47475 * 334.99857 * 7 6 5 31 31 H 0.96999 * 119.99989 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.47100 * 1.36931 * 17 8 7 33 33 H 1.08997 * 109.47126 * 65.30595 * 18 17 8 34 34 H 1.08996 * 109.47497 * 185.31580 * 18 17 8 35 35 H 1.09011 * 109.47013 * 305.31268 * 18 17 8 36 36 H 1.08999 * 109.47414 * 55.12919 * 19 17 8 37 37 H 1.09003 * 109.46999 * 175.13266 * 19 17 8 38 38 H 1.09004 * 109.46676 * 295.12832 * 19 17 8 39 39 H 1.08001 * 119.61128 * 180.30677 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2664 2.0828 1.1959 5 6 2.7276 3.3892 1.1476 6 6 2.9380 3.9841 -0.0822 7 6 3.4398 5.4037 -0.1467 8 7 4.8980 5.4002 -0.2879 9 6 5.6938 5.4118 0.8264 10 1 6.6286 4.8709 0.8280 11 6 5.2990 6.1187 1.9539 12 7 5.7835 5.7980 3.1349 13 14 4.0803 7.5254 1.7950 14 1 2.7094 7.0263 2.0720 15 1 4.4252 8.5917 2.7695 16 1 4.1374 8.0768 0.4173 17 6 5.5048 5.3843 -1.6212 18 6 6.4010 6.6130 -1.7884 19 6 6.3435 4.1152 -1.7848 20 7 2.7055 3.3237 -1.1996 21 6 2.2724 2.0781 -1.1915 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0934 1.5922 2.1424 28 1 2.9203 3.9352 2.0593 29 1 2.9931 5.9084 -1.0033 30 1 3.1646 5.9282 0.7682 31 1 5.5080 6.2922 3.9227 32 1 4.7202 5.4014 -2.3777 33 1 7.2392 6.5484 -1.0946 34 1 6.7775 6.6518 -2.8105 35 1 5.8247 7.5143 -1.5791 36 1 5.7243 3.2416 -1.5807 37 1 6.7243 4.0603 -2.8047 38 1 7.1794 4.1395 -1.0856 39 1 2.0979 1.5677 -2.1272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379261373.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:53 Heat of formation + Delta-G solvation = 27.750657 kcal Electronic energy + Delta-G solvation = -18578.180079 eV Core-core repulsion = 15906.392091 eV Total energy + Delta-G solvation = -2671.787988 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17945 -38.49133 -35.64686 -34.34975 -33.18872 -32.51868 -30.49252 -27.82329 -27.65247 -25.52086 -24.63036 -23.72047 -21.95297 -21.19759 -18.69933 -17.70782 -17.03788 -16.89740 -16.52895 -16.13681 -15.15075 -15.11034 -14.70231 -14.53895 -14.39761 -14.23551 -13.95854 -13.79580 -13.39497 -13.35625 -12.96978 -12.80333 -12.62903 -12.29641 -12.15858 -12.06971 -11.94699 -11.77943 -11.56212 -11.36244 -10.63436 -10.59904 -10.27069 -9.61269 -8.80725 -8.16572 -5.50949 0.26646 0.46134 1.27856 1.40997 1.51005 2.42077 2.79310 3.16350 3.44290 3.50657 3.90418 3.92157 4.07214 4.13958 4.26854 4.40797 4.48427 4.54991 4.58722 4.63789 4.67997 4.75685 4.86948 4.91476 5.01802 5.04926 5.08940 5.12663 5.13285 5.14710 5.38077 5.40655 5.48580 5.52316 5.61046 5.90862 5.98650 6.23126 6.98587 7.19227 7.65490 8.08615 9.03176 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.007800 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.395269 B = 3588.725170 C = 4232.439342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.081 4.081 5 C -0.169 4.169 6 C 0.106 3.894 7 C 0.178 3.822 8 N -0.598 5.598 9 C -0.235 4.235 10 H 0.043 0.957 11 C -0.014 4.014 12 N -0.945 5.945 13 Si 0.925 3.075 14 H -0.276 1.276 15 H -0.310 1.310 16 H -0.257 1.257 17 C 0.163 3.837 18 C -0.143 4.143 19 C -0.137 4.137 20 N -0.491 5.491 21 C 0.088 3.912 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.146 0.854 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.261 0.739 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 -8.857 -8.985 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.144 4.144 4 C -0.107 4.107 5 C -0.190 4.190 6 C -0.033 4.033 7 C 0.052 3.948 8 N -0.320 5.320 9 C -0.365 4.365 10 H 0.061 0.939 11 C -0.210 4.210 12 N -0.589 5.589 13 Si 0.755 3.245 14 H -0.204 1.204 15 H -0.238 1.238 16 H -0.181 1.181 17 C 0.058 3.942 18 C -0.202 4.202 19 C -0.196 4.196 20 N -0.200 5.200 21 C -0.070 4.070 22 H 0.096 0.904 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.164 0.836 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.448 -8.348 -9.652 15.878 hybrid contribution -0.248 0.494 1.676 1.765 sum -9.696 -7.853 -7.977 14.809 Atomic orbital electron populations 1.21730 0.93789 1.02676 1.01780 1.20486 0.96711 0.89752 1.04052 1.21146 1.00924 0.99043 0.93277 1.21668 0.96122 0.93322 0.99582 1.21972 1.01064 0.97205 0.98791 1.22158 0.93504 0.99006 0.88642 1.20208 0.84749 0.89811 1.00001 1.44303 0.99629 1.85509 1.02519 1.18469 1.03290 1.23847 0.90851 0.93942 1.25844 1.00224 0.99876 0.95034 1.69992 1.48834 1.41626 0.98479 0.86149 0.79122 0.81276 0.77967 1.20398 1.23845 1.18063 1.20620 0.94587 0.93823 0.85216 1.22031 0.99559 0.97765 1.00835 1.21960 0.99214 0.97875 1.00536 1.67478 1.12111 1.09654 1.30800 1.23105 0.95113 0.90155 0.98675 0.90443 0.93460 0.92691 0.89244 0.90381 0.83608 0.87487 0.91024 0.93307 0.92979 0.91027 0.94355 0.90668 0.94254 0.95180 0.90921 0.95029 0.80571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 71.98 0.71 -1.56 16 2 C -0.07 -1.34 6.09 29.85 0.18 -1.16 16 3 C -0.14 -3.91 5.15 -19.77 -0.10 -4.01 16 4 C -0.08 -2.64 9.86 22.47 0.22 -2.42 16 5 C -0.17 -6.94 9.72 22.36 0.22 -6.72 16 6 C 0.11 4.44 6.36 42.55 0.27 4.71 16 7 C 0.18 7.96 4.79 85.63 0.41 8.37 16 8 N -0.60 -28.31 2.05 -682.36 -1.40 -29.71 16 9 C -0.23 -13.08 8.76 84.03 0.74 -12.35 16 10 H 0.04 2.66 7.15 -2.91 -0.02 2.64 16 11 C -0.01 -0.78 5.31 84.86 0.45 -0.33 16 12 N -0.94 -58.23 13.97 21.65 0.30 -57.93 16 13 Si 0.93 45.72 24.96 68.60 1.71 47.44 16 14 H -0.28 -13.08 6.66 99.48 0.66 -12.42 16 15 H -0.31 -15.58 7.11 99.48 0.71 -14.88 16 16 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 17 C 0.16 6.52 3.36 44.99 0.15 6.67 16 18 C -0.14 -5.33 9.05 71.98 0.65 -4.67 16 19 C -0.14 -5.23 9.10 71.98 0.65 -4.58 16 20 N -0.49 -18.38 10.27 -183.89 -1.89 -20.27 16 21 C 0.09 2.62 10.86 84.67 0.92 3.54 16 22 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 1.37 8.09 -2.38 -0.02 1.36 16 26 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 27 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 28 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 29 H 0.07 2.92 7.91 -2.39 -0.02 2.91 16 30 H 0.05 2.33 2.88 -2.39 -0.01 2.32 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.07 2.66 7.79 -2.39 -0.02 2.64 16 33 H 0.04 1.57 7.81 -2.39 -0.02 1.55 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.03 1.31 7.23 -2.38 -0.02 1.30 16 39 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -65.86 316.87 5.17 -60.69 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.96 Total: 14.28 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 5.48 Total: -14.50 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -2.98 Total: -107.90 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.71 Total: 47.44 kcal Total: -65.86 5.17 -60.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379261373.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.443 kcal (2) G-P(sol) polarization free energy of solvation -65.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds