Wall clock time and date at job start Mon Mar 30 2020 06:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47242 * 2 1 4 4 H 1.09004 * 109.47032 * 55.00389 * 3 2 1 5 5 N 1.46500 * 109.47015 * 294.99889 * 3 2 1 6 6 C 1.32217 * 119.99450 * 126.05810 * 5 3 2 7 7 C 1.46908 * 120.83666 * 354.76562 * 6 5 3 8 8 C 1.34380 * 119.36763 * 179.97438 * 7 6 5 9 9 N 1.36418 * 121.22217 * 359.97438 * 8 7 6 10 10 H 0.97001 * 119.09010 * 179.97438 * 9 8 7 11 11 C 1.37772 * 121.82139 * 0.02688 * 9 8 7 12 12 C 1.40176 * 119.74038 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99389 * 200.80083 * 12 11 9 14 14 C 1.40352 * 120.00586 * 20.79724 * 12 11 9 15 15 N 1.30585 * 119.99525 * 18.59121 * 14 12 11 16 16 Si 1.86793 * 119.99923 * 198.59362 * 14 12 11 17 17 H 1.48502 * 109.47496 * 60.00036 * 16 14 12 18 18 H 1.48502 * 109.46879 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47332 * 299.99764 * 16 14 12 20 20 C 1.39061 * 120.50816 * 359.68648 * 11 9 8 21 21 C 1.52995 * 109.46846 * 175.00184 * 3 2 1 22 22 C 1.53003 * 109.47294 * 300.00020 * 21 3 2 23 23 C 1.52996 * 109.47468 * 59.99939 * 21 3 2 24 24 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46763 * 300.00224 * 1 2 3 26 26 H 1.08999 * 109.47371 * 59.99435 * 1 2 3 27 27 H 1.09002 * 109.46763 * 239.99776 * 2 1 3 28 28 H 1.08997 * 109.47075 * 120.00126 * 2 1 3 29 29 H 1.08003 * 120.31830 * 359.97438 * 7 6 5 30 30 H 1.08003 * 119.38584 * 180.02562 * 8 7 6 31 31 H 0.97007 * 119.99162 * 180.02562 * 15 14 12 32 32 H 1.08006 * 120.62741 * 180.28885 * 20 11 9 33 33 H 1.09005 * 109.47110 * 179.97438 * 21 3 2 34 34 H 1.08996 * 109.47251 * 60.00104 * 22 21 3 35 35 H 1.09004 * 109.47132 * 180.02562 * 22 21 3 36 36 H 1.09003 * 109.47106 * 299.99652 * 22 21 3 37 37 H 1.08999 * 109.47169 * 59.99909 * 23 21 3 38 38 H 1.09000 * 109.47475 * 179.97438 * 23 21 3 39 39 H 1.08996 * 109.47323 * 300.00338 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6525 2.0975 -1.2518 6 6 0.9880 3.2401 -1.2218 7 6 0.5293 3.8113 0.0516 8 6 -0.1432 4.9747 0.0479 9 7 -0.4073 5.6350 -1.1162 10 1 -0.8955 6.4726 -1.0830 11 6 -0.0006 5.1448 -2.3379 12 6 -0.2950 5.8598 -3.5071 13 1 -0.2928 5.3566 -4.4627 14 6 -0.5928 7.2296 -3.4359 15 7 -0.2529 7.9175 -2.3793 16 14 -1.4752 8.0683 -4.8526 17 1 -2.7967 7.4244 -5.0634 18 1 -1.6696 9.5055 -4.5332 19 1 -0.6604 7.9420 -6.0877 20 6 0.7058 3.9497 -2.4193 21 6 3.5648 1.4442 0.1257 22 6 3.9696 0.7601 1.4330 23 6 4.1748 0.6876 -1.0559 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.7306 3.3010 0.9820 30 1 -0.4802 5.3950 0.9839 31 1 -0.4591 8.8641 -2.3300 32 1 1.0296 3.5660 -3.3756 33 1 3.9283 2.4719 0.1252 34 1 3.6063 -0.2675 1.4330 35 1 5.0559 0.7618 1.5227 36 1 3.5351 1.2992 2.2749 37 1 3.8865 1.1749 -1.9873 38 1 5.2612 0.6892 -0.9666 39 1 3.8115 -0.3400 -1.0560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379458549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:20 Heat of formation + Delta-G solvation = 14.045528 kcal Electronic energy + Delta-G solvation = -18131.066577 eV Core-core repulsion = 15458.684289 eV Total energy + Delta-G solvation = -2672.382287 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.58687 -37.17314 -34.20703 -32.86225 -31.57774 -30.55894 -28.27836 -26.61847 -26.34125 -24.55286 -21.95477 -21.40089 -20.52968 -18.29501 -17.84962 -16.57958 -15.41697 -15.05451 -14.84695 -14.22374 -13.93260 -13.73129 -13.18095 -12.92800 -12.75401 -12.33969 -12.16885 -11.80584 -11.77839 -11.55446 -11.21352 -11.08340 -11.03825 -10.92611 -10.69974 -10.38023 -10.35832 -10.13647 -10.01069 -9.73361 -9.59256 -9.11799 -8.21508 -7.37420 -7.27811 -5.89987 -4.73228 2.62808 2.80420 2.88000 2.91060 3.20465 3.65132 4.31741 4.66360 5.29655 5.40629 5.50626 5.59234 5.66487 5.76122 5.84460 5.95068 6.07433 6.18939 6.23162 6.30014 6.36518 6.38369 6.51705 6.56437 6.67089 6.72058 6.79027 6.82667 6.89614 6.92532 7.02631 7.08309 7.14167 7.45548 7.72710 7.80686 8.02644 8.30447 8.35453 8.85552 8.98196 9.71226 9.84454 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.035596 B = 0.005011 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.408707 B = 5586.686111 C = 5643.399863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.092 3.908 4 H 0.030 0.970 5 N -0.655 5.655 6 C 0.283 3.717 7 C -0.300 4.300 8 C 0.123 3.877 9 N -0.604 5.604 10 H 0.412 0.588 11 C 0.328 3.672 12 C -0.466 4.466 13 H 0.102 0.898 14 C 0.077 3.923 15 N -0.813 5.813 16 Si 0.923 3.077 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.359 4.359 21 C -0.086 4.086 22 C -0.146 4.146 23 C -0.130 4.130 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.292 0.708 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -2.812 4.546 5.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.020 4.020 4 H 0.048 0.952 5 N -0.380 5.380 6 C 0.119 3.881 7 C -0.331 4.331 8 C -0.007 4.007 9 N -0.215 5.215 10 H 0.253 0.747 11 C 0.220 3.780 12 C -0.499 4.499 13 H 0.120 0.880 14 C -0.141 4.141 15 N -0.441 5.441 16 Si 0.746 3.254 17 H -0.184 1.184 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.388 4.388 21 C -0.105 4.105 22 C -0.204 4.204 23 C -0.188 4.188 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.018 -3.327 4.125 5.300 hybrid contribution -0.717 1.248 0.522 1.531 sum -0.735 -2.079 4.647 5.144 Atomic orbital electron populations 1.21662 0.96819 0.99685 1.01843 1.21581 0.95183 0.97697 1.00239 1.21285 0.92494 0.94134 0.94071 0.95216 1.73349 1.29863 1.12228 1.22582 1.20211 0.88182 0.89287 0.90390 1.22302 1.11530 0.99601 0.99621 1.21221 0.96579 0.93525 0.89345 1.42058 1.50869 1.24651 1.03967 0.74705 1.17608 0.86443 0.90739 0.83227 1.19485 1.42548 0.93071 0.94830 0.87997 1.26201 0.92380 0.97626 0.97894 1.69335 1.34741 1.10287 1.29732 0.86089 0.80611 0.77713 0.80949 1.18405 1.20136 1.18370 1.20188 1.20957 1.01394 0.96309 1.21135 0.96807 0.98727 0.93861 1.21926 1.00036 1.00627 0.97813 1.21658 0.97632 0.99792 0.99681 0.94346 0.94068 0.92001 0.92079 0.93488 0.86708 0.85455 0.89651 0.87105 0.92510 0.92755 0.93628 0.93513 0.91286 0.94934 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.80 37.16 0.36 -2.12 16 2 C -0.11 -1.93 4.89 -26.73 -0.13 -2.06 16 3 C 0.09 1.82 2.06 -67.93 -0.14 1.68 16 4 H 0.03 0.61 5.21 -51.93 -0.27 0.34 16 5 N -0.65 -15.31 8.90 -50.79 -0.45 -15.76 16 6 C 0.28 6.88 6.80 -82.74 -0.56 6.31 16 7 C -0.30 -6.48 9.40 -37.44 -0.35 -6.83 16 8 C 0.12 2.45 11.15 -16.87 -0.19 2.26 16 9 N -0.60 -13.29 4.90 -10.83 -0.05 -13.34 16 10 H 0.41 8.69 6.26 -40.82 -0.26 8.43 16 11 C 0.33 8.06 6.38 -84.16 -0.54 7.52 16 12 C -0.47 -11.10 9.02 -38.06 -0.34 -11.45 16 13 H 0.10 2.37 7.92 -52.49 -0.42 1.95 16 14 C 0.08 1.68 5.17 -17.29 -0.09 1.59 16 15 N -0.81 -17.81 11.09 55.57 0.62 -17.19 16 16 Si 0.92 16.42 29.60 -169.99 -5.03 11.39 16 17 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 18 H -0.28 -4.79 7.11 56.52 0.40 -4.38 16 19 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 20 C -0.36 -9.16 9.83 -37.83 -0.37 -9.54 16 21 C -0.09 -1.55 2.94 -90.62 -0.27 -1.82 16 22 C -0.15 -2.14 8.85 37.16 0.33 -1.81 16 23 C -0.13 -2.26 8.68 37.16 0.32 -1.93 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.24 7.75 -51.93 -0.40 0.83 16 27 H 0.06 1.12 6.71 -51.93 -0.35 0.77 16 28 H 0.05 0.73 6.17 -51.93 -0.32 0.41 16 29 H 0.12 2.30 5.87 -52.48 -0.31 1.99 16 30 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.29 5.78 8.29 -40.82 -0.34 5.45 16 32 H 0.11 2.90 8.06 -52.48 -0.42 2.48 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.76 6.54 -51.93 -0.34 0.42 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -25.54 310.41 -8.11 -33.65 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -5.90 Total: 14.77 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.97 Total: -18.19 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.11 Total: -46.30 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.39 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -25.54 -8.11 -33.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379458549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.693 kcal (2) G-P(sol) polarization free energy of solvation -25.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds