Wall clock time and date at job start Mon Mar 30 2020 06:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47242 * 2 1 4 4 H 1.09004 * 109.47032 * 55.00389 * 3 2 1 5 5 N 1.46500 * 109.47015 * 294.99889 * 3 2 1 6 6 C 1.32217 * 119.99450 * 126.05810 * 5 3 2 7 7 C 1.46908 * 120.83666 * 354.76562 * 6 5 3 8 8 C 1.34380 * 119.36763 * 179.97438 * 7 6 5 9 9 N 1.36418 * 121.22217 * 359.97438 * 8 7 6 10 10 H 0.97001 * 119.09010 * 179.97438 * 9 8 7 11 11 C 1.37772 * 121.82139 * 0.02688 * 9 8 7 12 12 C 1.40176 * 119.74038 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99389 * 200.80083 * 12 11 9 14 14 C 1.40352 * 120.00586 * 20.79724 * 12 11 9 15 15 N 1.30585 * 119.99525 * 18.59121 * 14 12 11 16 16 Si 1.86793 * 119.99923 * 198.59362 * 14 12 11 17 17 H 1.48502 * 109.47496 * 60.00036 * 16 14 12 18 18 H 1.48502 * 109.46879 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47332 * 299.99764 * 16 14 12 20 20 C 1.39061 * 120.50816 * 359.68648 * 11 9 8 21 21 C 1.52995 * 109.46846 * 175.00184 * 3 2 1 22 22 C 1.53003 * 109.47294 * 300.00020 * 21 3 2 23 23 C 1.52996 * 109.47468 * 59.99939 * 21 3 2 24 24 H 1.08996 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46763 * 300.00224 * 1 2 3 26 26 H 1.08999 * 109.47371 * 59.99435 * 1 2 3 27 27 H 1.09002 * 109.46763 * 239.99776 * 2 1 3 28 28 H 1.08997 * 109.47075 * 120.00126 * 2 1 3 29 29 H 1.08003 * 120.31830 * 359.97438 * 7 6 5 30 30 H 1.08003 * 119.38584 * 180.02562 * 8 7 6 31 31 H 0.97007 * 119.99162 * 180.02562 * 15 14 12 32 32 H 1.08006 * 120.62741 * 180.28885 * 20 11 9 33 33 H 1.09005 * 109.47110 * 179.97438 * 21 3 2 34 34 H 1.08996 * 109.47251 * 60.00104 * 22 21 3 35 35 H 1.09004 * 109.47132 * 180.02562 * 22 21 3 36 36 H 1.09003 * 109.47106 * 299.99652 * 22 21 3 37 37 H 1.08999 * 109.47169 * 59.99909 * 23 21 3 38 38 H 1.09000 * 109.47475 * 179.97438 * 23 21 3 39 39 H 1.08996 * 109.47323 * 300.00338 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6525 2.0975 -1.2518 6 6 0.9880 3.2401 -1.2218 7 6 0.5293 3.8113 0.0516 8 6 -0.1432 4.9747 0.0479 9 7 -0.4073 5.6350 -1.1162 10 1 -0.8955 6.4726 -1.0830 11 6 -0.0006 5.1448 -2.3379 12 6 -0.2950 5.8598 -3.5071 13 1 -0.2928 5.3566 -4.4627 14 6 -0.5928 7.2296 -3.4359 15 7 -0.2529 7.9175 -2.3793 16 14 -1.4752 8.0683 -4.8526 17 1 -2.7967 7.4244 -5.0634 18 1 -1.6696 9.5055 -4.5332 19 1 -0.6604 7.9420 -6.0877 20 6 0.7058 3.9497 -2.4193 21 6 3.5648 1.4442 0.1257 22 6 3.9696 0.7601 1.4330 23 6 4.1748 0.6876 -1.0559 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.7306 3.3010 0.9820 30 1 -0.4802 5.3950 0.9839 31 1 -0.4591 8.8641 -2.3300 32 1 1.0296 3.5660 -3.3756 33 1 3.9283 2.4719 0.1252 34 1 3.6063 -0.2675 1.4330 35 1 5.0559 0.7618 1.5227 36 1 3.5351 1.2992 2.2749 37 1 3.8865 1.1749 -1.9873 38 1 5.2612 0.6892 -0.9666 39 1 3.8115 -0.3400 -1.0560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379458549.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:20 Heat of formation + Delta-G solvation = 0.603242 kcal Electronic energy + Delta-G solvation = -18131.649478 eV Core-core repulsion = 15458.684289 eV Total energy + Delta-G solvation = -2672.965188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30816 -38.70001 -35.91339 -34.52106 -33.03779 -32.31416 -29.95778 -28.07303 -27.93361 -26.13545 -23.49995 -23.03353 -22.18962 -19.92833 -19.50422 -18.33899 -17.04386 -16.64708 -16.45154 -15.73226 -15.44990 -15.26418 -14.65760 -14.49560 -14.43911 -13.80176 -13.63429 -13.35981 -13.14850 -13.05958 -12.76186 -12.62335 -12.47930 -12.47193 -12.29857 -11.95503 -11.79138 -11.71513 -11.49844 -11.32569 -11.12854 -10.74174 -9.97709 -9.10324 -8.97086 -7.65667 -6.59194 0.98774 1.14323 1.41400 1.52437 1.65286 2.15821 2.59245 2.95975 3.53581 3.95667 4.06012 4.16305 4.21092 4.39489 4.46661 4.52647 4.64418 4.74187 4.84568 4.90465 4.97093 5.01057 5.01505 5.07223 5.08032 5.17204 5.21631 5.24348 5.36783 5.43302 5.50675 5.62340 5.67375 5.71563 5.91488 6.03701 6.14790 6.53046 6.56818 7.05749 7.24595 8.03989 8.09770 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.035596 B = 0.005011 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.408707 B = 5586.686111 C = 5643.399863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C 0.087 3.913 4 H 0.025 0.975 5 N -0.677 5.677 6 C 0.263 3.737 7 C -0.317 4.317 8 C 0.132 3.868 9 N -0.605 5.605 10 H 0.417 0.583 11 C 0.317 3.683 12 C -0.497 4.497 13 H 0.093 0.907 14 C 0.051 3.949 15 N -0.823 5.823 16 Si 0.994 3.006 17 H -0.257 1.257 18 H -0.260 1.260 19 H -0.264 1.264 20 C -0.404 4.404 21 C -0.087 4.087 22 C -0.137 4.137 23 C -0.124 4.124 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.179 0.821 31 H 0.306 0.694 32 H 0.082 0.918 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 -2.342 6.154 6.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C -0.025 4.025 4 H 0.043 0.957 5 N -0.402 5.402 6 C 0.098 3.902 7 C -0.346 4.346 8 C 0.003 3.997 9 N -0.217 5.217 10 H 0.258 0.742 11 C 0.208 3.792 12 C -0.529 4.529 13 H 0.111 0.889 14 C -0.167 4.167 15 N -0.450 5.450 16 Si 0.814 3.186 17 H -0.181 1.181 18 H -0.184 1.184 19 H -0.189 1.189 20 C -0.433 4.433 21 C -0.107 4.107 22 C -0.195 4.195 23 C -0.182 4.182 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.149 0.851 30 H 0.196 0.804 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.484 -2.870 5.764 6.457 hybrid contribution -0.527 1.127 0.018 1.245 sum -1.012 -1.742 5.782 6.123 Atomic orbital electron populations 1.21604 0.96693 1.00884 1.00314 1.21556 0.95284 0.96211 1.01141 1.21454 0.93797 0.94989 0.92240 0.95692 1.73252 1.29229 1.12198 1.25473 1.20343 0.88845 0.89804 0.91210 1.22361 1.12694 1.00645 0.98909 1.21876 0.94836 0.92675 0.90297 1.42054 1.50936 1.24913 1.03813 0.74202 1.17718 0.86222 0.90548 0.84674 1.19686 1.44117 0.94553 0.94521 0.88875 1.26925 0.92098 0.97154 1.00549 1.69315 1.33618 1.11284 1.30748 0.85036 0.79056 0.77228 0.77279 1.18114 1.18362 1.18851 1.20115 1.23932 1.03311 0.95941 1.21129 0.95449 0.97872 0.96203 1.21840 1.01267 1.00844 0.95535 1.21585 0.98998 0.99821 0.97763 0.91760 0.93484 0.95578 0.93041 0.90473 0.85130 0.80373 0.88212 0.90012 0.95155 0.91385 0.91930 0.92903 0.94811 0.92815 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.80 71.98 0.71 -3.97 16 2 C -0.10 -3.56 4.89 30.59 0.15 -3.41 16 3 C 0.09 3.43 2.06 44.99 0.09 3.53 16 4 H 0.03 1.01 5.21 -2.39 -0.01 1.00 16 5 N -0.68 -33.10 8.90 -314.60 -2.80 -35.90 16 6 C 0.26 13.38 6.80 42.30 0.29 13.67 16 7 C -0.32 -13.71 9.40 23.66 0.22 -13.49 16 8 C 0.13 5.13 11.15 83.10 0.93 6.06 16 9 N -0.60 -26.66 4.90 -188.19 -0.92 -27.58 16 10 H 0.42 17.25 6.26 -92.71 -0.58 16.67 16 11 C 0.32 16.21 6.38 38.88 0.25 16.46 16 12 C -0.50 -24.45 9.02 23.26 0.21 -24.24 16 13 H 0.09 4.59 7.92 -2.91 -0.02 4.56 16 14 C 0.05 2.18 5.17 85.39 0.44 2.62 16 15 N -0.82 -35.10 11.09 21.89 0.24 -34.86 16 16 Si 0.99 32.74 29.60 68.60 2.03 34.77 16 17 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 18 H -0.26 -7.84 7.11 99.48 0.71 -7.13 16 19 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 20 C -0.40 -22.07 9.83 23.41 0.23 -21.84 16 21 C -0.09 -3.10 2.94 -10.80 -0.03 -3.13 16 22 C -0.14 -3.65 8.85 71.98 0.64 -3.02 16 23 C -0.12 -4.28 8.68 71.98 0.63 -3.66 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.02 1.05 7.75 -2.39 -0.02 1.03 16 27 H 0.05 1.85 6.71 -2.39 -0.02 1.83 16 28 H 0.08 2.18 6.17 -2.39 -0.01 2.16 16 29 H 0.13 5.13 5.87 -2.91 -0.02 5.12 16 30 H 0.18 5.00 8.06 -2.91 -0.02 4.98 16 31 H 0.31 11.48 8.29 -92.70 -0.77 10.71 16 32 H 0.08 4.74 8.06 -2.91 -0.02 4.71 16 33 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.07 1.63 6.32 -2.39 -0.02 1.61 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.03 1.37 7.60 -2.39 -0.02 1.35 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.84 6.54 -2.39 -0.02 1.82 16 Total: -1.00 -58.30 310.41 3.75 -54.55 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: 0.46 Total: 43.43 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 4.74 Total: -34.41 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -3.48 Total: -98.34 kcal Atomic # 14 Polarization: 32.74 SS G_CDS: 2.03 Total: 34.77 kcal Total: -58.30 3.75 -54.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379458549.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.156 kcal (2) G-P(sol) polarization free energy of solvation -58.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds