Wall clock time and date at job start Mon Mar 30 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47650 * 2 1 4 4 C 1.53000 * 109.47125 * 239.99808 * 2 1 3 5 5 C 1.50700 * 109.46944 * 120.00191 * 2 1 3 6 6 C 1.38308 * 119.92698 * 239.97843 * 5 2 1 7 7 C 1.38082 * 120.07903 * 180.02562 * 6 5 2 8 8 C 1.38934 * 119.92154 * 359.72086 * 7 6 5 9 9 N 1.39677 * 120.07273 * 180.28255 * 8 7 6 10 10 C 1.38885 * 119.85027 * 0.54836 * 8 7 6 11 11 C 1.50700 * 120.03815 * 179.74683 * 10 8 7 12 12 H 1.09004 * 109.47210 * 324.72889 * 11 10 8 13 13 N 1.46899 * 109.47483 * 204.72558 * 11 10 8 14 14 C 1.50702 * 109.46869 * 84.72596 * 11 10 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.38129 * 119.92813 * 359.47664 * 10 8 7 23 23 H 1.08996 * 109.47095 * 300.00202 * 1 2 3 24 24 H 1.09007 * 109.46447 * 60.00019 * 1 2 3 25 25 H 1.08999 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47145 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46854 * 299.99899 * 3 2 1 28 28 H 1.09008 * 109.46778 * 59.99442 * 3 2 1 29 29 H 1.09007 * 109.47134 * 300.00253 * 4 2 1 30 30 H 1.09003 * 109.47180 * 60.00222 * 4 2 1 31 31 H 1.09005 * 109.46999 * 180.02562 * 4 2 1 32 32 H 1.08007 * 119.96011 * 0.02562 * 6 5 2 33 33 H 1.08000 * 120.03931 * 180.02562 * 7 6 5 34 34 H 0.96996 * 119.99621 * 180.27655 * 9 8 7 35 35 H 0.96996 * 119.99896 * 0.26659 * 9 8 7 36 36 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 37 37 H 1.00904 * 110.99882 * 63.95460 * 13 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.96513 * 180.25257 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 2.8277 -0.0370 2.1397 7 6 3.2901 -0.6851 3.2679 8 6 2.9507 -2.0135 3.4921 9 7 3.4118 -2.6704 4.6353 10 6 2.1564 -2.6885 2.5742 11 6 1.7904 -4.1311 2.8104 12 1 2.6245 -4.6439 3.2895 13 7 1.4914 -4.7772 1.5254 14 6 0.5778 -4.2022 3.7025 15 1 0.1180 -3.2935 4.0621 16 6 0.0517 -5.4271 4.0545 17 7 0.6115 -6.5336 3.6163 18 14 -1.4558 -5.5149 5.1540 19 1 -1.8911 -4.1400 5.5080 20 1 -2.5528 -6.2114 4.4352 21 1 -1.1223 -6.2632 6.3926 22 6 1.6977 -2.0343 1.4475 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1301 1.4423 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1301 -0.7217 -1.2490 32 1 3.0875 0.9970 1.9670 33 1 3.9108 -0.1585 3.9777 34 1 3.1775 -3.5990 4.7887 35 1 3.9664 -2.1980 5.2756 36 1 0.7210 -4.3197 1.0613 37 1 2.3082 -4.7999 0.9334 38 1 0.2415 -7.3953 3.8642 39 1 1.0766 -2.5574 0.7354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380654286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:25 Heat of formation + Delta-G solvation = -8.248627 kcal Electronic energy + Delta-G solvation = -18585.315419 eV Core-core repulsion = 15911.966385 eV Total energy + Delta-G solvation = -2673.349034 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82369 -38.06402 -36.04952 -34.26193 -33.58909 -30.78627 -28.86554 -28.35585 -28.01468 -27.59400 -24.49232 -23.11239 -21.68609 -19.51454 -18.46157 -17.97489 -17.62081 -16.63304 -16.08656 -15.89930 -15.17365 -15.02709 -14.86139 -14.41539 -14.39659 -14.10313 -13.85043 -13.57984 -13.08623 -12.95015 -12.76795 -12.67387 -12.59433 -12.47460 -12.25150 -11.84874 -11.83365 -11.31331 -11.20500 -11.14816 -10.97404 -10.54542 -9.42025 -8.85256 -8.10705 -7.88828 -6.16088 0.77290 0.94400 1.38604 1.42458 1.52040 2.46378 3.15848 3.25919 3.32890 3.90849 4.00341 4.25527 4.30281 4.35882 4.46798 4.55846 4.72485 4.77797 4.85323 4.94944 4.98161 5.08732 5.11206 5.12967 5.23759 5.28842 5.37906 5.39820 5.48446 5.53921 5.70778 5.77293 5.89720 6.06467 6.22227 6.29195 6.69902 6.83833 7.12123 7.21610 7.31123 7.56016 9.06423 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.006940 C = 0.006318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.340083 B = 4033.381251 C = 4430.699148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.020 4.020 3 C -0.136 4.136 4 C -0.134 4.134 5 C -0.136 4.136 6 C -0.093 4.093 7 C -0.210 4.210 8 C 0.198 3.802 9 N -0.871 5.871 10 C -0.180 4.180 11 C 0.272 3.728 12 H 0.011 0.989 13 N -0.819 5.819 14 C -0.528 4.528 15 H 0.035 0.965 16 C 0.038 3.962 17 N -0.878 5.878 18 Si 0.940 3.060 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.279 1.279 22 C -0.084 4.084 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.398 0.602 35 H 0.400 0.600 36 H 0.320 0.680 37 H 0.308 0.692 38 H 0.254 0.746 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 14.295 -5.635 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 C -0.193 4.193 4 C -0.191 4.191 5 C -0.138 4.138 6 C -0.111 4.111 7 C -0.233 4.233 8 C 0.093 3.907 9 N -0.411 5.411 10 C -0.187 4.187 11 C 0.162 3.838 12 H 0.029 0.971 13 N -0.346 5.346 14 C -0.567 4.567 15 H 0.054 0.946 16 C -0.165 4.165 17 N -0.515 5.515 18 Si 0.767 3.233 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.205 1.205 22 C -0.103 4.103 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.227 0.773 35 H 0.229 0.771 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.063 0.937 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.205 13.429 -5.220 15.009 hybrid contribution -0.539 0.048 0.742 0.918 sum 3.665 13.478 -4.478 14.667 Atomic orbital electron populations 1.21870 0.94430 1.01237 1.01786 1.19383 0.95127 0.95561 0.91972 1.21892 1.01204 0.93960 1.02251 1.21849 1.00835 0.99755 0.96640 1.19702 1.02123 0.93683 0.98315 1.21023 0.96947 1.00004 0.93114 1.20764 1.07877 0.93113 1.01506 1.17894 0.93064 0.92059 0.87724 1.42494 1.59260 1.15695 1.23651 1.20970 1.01321 1.00060 0.96300 1.17562 0.94302 0.83727 0.88222 0.97116 1.59039 1.08534 1.61200 1.05873 1.21063 1.14062 0.91224 1.30306 0.94644 1.25594 0.98795 0.95705 0.96416 1.70226 1.40437 0.97252 1.43573 0.85817 0.80747 0.77632 0.79118 1.20119 1.20977 1.20524 1.20545 0.98773 0.94647 0.96371 0.93470 0.90874 0.94093 0.92041 0.91227 0.92443 0.93909 0.91001 0.92905 0.83939 0.84985 0.77298 0.77076 0.86712 0.88112 0.93683 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.29 71.98 0.60 -2.81 16 2 C -0.02 -0.51 0.85 -52.93 -0.05 -0.55 16 3 C -0.14 -2.64 7.13 71.98 0.51 -2.13 16 4 C -0.13 -3.10 8.29 71.98 0.60 -2.51 16 5 C -0.14 -4.34 4.76 -19.84 -0.09 -4.43 16 6 C -0.09 -2.77 8.97 22.25 0.20 -2.57 16 7 C -0.21 -6.79 9.90 22.40 0.22 -6.57 16 8 C 0.20 7.67 6.73 38.21 0.26 7.93 16 9 N -0.87 -30.79 8.99 -51.37 -0.46 -31.25 16 10 C -0.18 -7.76 5.00 -19.74 -0.10 -7.85 16 11 C 0.27 13.58 2.28 43.42 0.10 13.68 16 12 H 0.01 0.61 6.83 -2.38 -0.02 0.59 16 13 N -0.82 -39.43 8.12 -174.95 -1.42 -40.85 16 14 C -0.53 -29.15 8.71 25.60 0.22 -28.93 16 15 H 0.04 2.03 7.74 -2.91 -0.02 2.01 16 16 C 0.04 2.14 5.39 84.66 0.46 2.59 16 17 N -0.88 -51.36 12.76 21.45 0.27 -51.09 16 18 Si 0.94 44.43 29.54 68.60 2.03 46.46 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 C -0.08 -3.23 7.93 22.25 0.18 -3.06 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.04 1.15 7.38 -2.39 -0.02 1.13 16 26 H 0.06 1.13 7.51 -2.39 -0.02 1.11 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.11 7.51 -2.38 -0.02 1.09 16 29 H 0.04 1.10 7.38 -2.38 -0.02 1.08 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.14 3.36 5.88 -2.91 -0.02 3.34 16 33 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.40 15.84 6.94 -92.71 -0.64 15.19 16 35 H 0.40 11.10 8.84 -92.71 -0.82 10.28 16 36 H 0.32 14.87 7.20 -89.69 -0.65 14.22 16 37 H 0.31 13.47 9.06 -89.69 -0.81 12.66 16 38 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 39 H 0.11 4.06 5.32 -2.91 -0.02 4.04 16 Total: -1.00 -62.66 309.64 1.68 -60.97 By element: Atomic # 1 Polarization: 54.80 SS G_CDS: -1.84 Total: 52.96 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 3.10 Total: -37.21 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -1.61 Total: -123.19 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -62.66 1.68 -60.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380654286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.725 kcal (2) G-P(sol) polarization free energy of solvation -62.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds