Wall clock time and date at job start Mon Mar 30 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46793 * 2 1 4 4 C 1.52997 * 109.46843 * 119.99666 * 2 1 3 5 5 C 1.53006 * 109.46729 * 174.99899 * 4 2 1 6 6 C 1.53004 * 109.46779 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46661 * 180.02562 * 6 5 4 8 8 C 1.32211 * 120.00062 * 113.91127 * 7 6 5 9 9 C 1.46912 * 120.83328 * 356.75616 * 8 7 6 10 10 C 1.34371 * 119.37172 * 180.02562 * 9 8 7 11 11 N 1.36427 * 121.21907 * 359.97438 * 10 9 8 12 12 H 0.96998 * 119.09231 * 180.02562 * 11 10 9 13 13 C 1.37773 * 121.81902 * 0.02562 * 11 10 9 14 14 C 1.40181 * 119.74442 * 180.27267 * 13 11 10 15 15 H 1.07993 * 120.00195 * 215.63715 * 14 13 11 16 16 C 1.40353 * 119.99516 * 35.63610 * 14 13 11 17 17 N 1.30580 * 120.00623 * 7.96281 * 16 14 13 18 18 Si 1.86807 * 119.99860 * 187.95917 * 16 14 13 19 19 H 1.48507 * 109.46960 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46828 * 119.99847 * 18 16 14 21 21 H 1.48499 * 109.47204 * 240.00438 * 18 16 14 22 22 C 1.39066 * 120.51366 * 359.97438 * 13 11 10 23 23 H 1.08998 * 109.46996 * 300.00036 * 1 2 3 24 24 H 1.08999 * 109.46998 * 60.00189 * 1 2 3 25 25 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46996 * 239.99964 * 2 1 3 27 27 H 1.09005 * 109.46757 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47195 * 299.99691 * 3 2 1 29 29 H 1.08998 * 109.47379 * 60.00199 * 3 2 1 30 30 H 1.09004 * 109.47045 * 55.00942 * 4 2 1 31 31 H 1.08989 * 109.47381 * 295.00056 * 4 2 1 32 32 H 1.09001 * 109.47161 * 60.00393 * 5 4 2 33 33 H 1.09006 * 109.47256 * 300.00076 * 5 4 2 34 34 H 1.09001 * 109.47204 * 60.00112 * 6 5 4 35 35 H 1.09006 * 109.47038 * 299.99903 * 6 5 4 36 36 H 1.08005 * 120.31661 * 0.04270 * 9 8 7 37 37 H 1.08000 * 119.39280 * 180.02562 * 10 9 8 38 38 H 0.96998 * 120.00676 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.62696 * 179.97438 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 6 4.0748 -1.5528 2.4370 7 7 5.5349 -1.6573 2.3786 8 6 6.2799 -1.0070 3.2561 9 6 5.6668 -0.1188 4.2528 10 6 6.4519 0.5283 5.1305 11 7 7.8075 0.3751 5.1134 12 1 8.3447 0.8568 5.7616 13 6 8.4344 -0.4449 4.2008 14 6 9.8299 -0.5746 4.2261 15 1 10.3787 -0.6864 3.3027 16 6 10.5140 -0.5591 5.4515 17 7 9.8454 -0.5807 6.5730 18 14 12.3812 -0.5076 5.4783 19 1 12.8959 -0.4889 4.0854 20 1 12.8324 0.7159 6.1887 21 1 12.8995 -1.7082 6.1819 22 6 7.6929 -1.1497 3.2588 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7516 -0.1583 2.1369 32 1 3.9995 0.1676 1.1421 33 1 3.8532 -1.3940 0.3002 34 1 3.6401 -2.5513 2.4825 35 1 3.7864 -0.9901 3.3250 36 1 4.5951 0.0127 4.2800 37 1 6.0016 1.1810 5.8637 38 1 10.3182 -0.5704 7.4199 39 1 8.1825 -1.7926 2.5423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381125601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:20 Heat of formation + Delta-G solvation = 4.126036 kcal Electronic energy + Delta-G solvation = -17328.980175 eV Core-core repulsion = 14656.167747 eV Total energy + Delta-G solvation = -2672.812429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.54388 -37.01023 -34.83452 -33.57477 -31.39377 -30.49107 -28.29986 -27.13736 -26.32825 -24.55474 -21.75265 -21.27046 -19.85131 -19.69233 -17.93091 -16.57663 -15.53560 -15.26299 -14.84619 -14.67185 -14.01327 -13.83683 -13.41174 -13.26619 -12.90921 -12.77937 -12.24800 -11.95845 -11.67872 -11.55954 -11.50083 -11.44460 -11.13149 -10.95034 -10.77210 -10.58220 -10.46606 -10.41645 -10.14847 -9.88731 -9.62391 -9.30369 -8.11584 -7.49356 -7.14574 -5.89802 -4.77086 2.65746 2.75276 2.93760 3.00354 3.17643 3.73016 4.29740 4.67170 4.90514 4.99103 5.05378 5.31339 5.52457 5.58145 5.61759 5.69860 5.78116 5.87317 5.88225 5.97814 6.05885 6.19324 6.23341 6.33495 6.43252 6.47814 6.56429 6.61844 6.74562 6.79530 6.88419 6.93834 7.01530 7.43117 7.74298 7.80066 7.99721 8.25982 8.38984 8.80919 8.92135 9.74879 9.87173 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.051676 B = 0.003695 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.702838 B = 7575.984365 C = 7671.451276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.113 4.113 5 C -0.111 4.111 6 C 0.059 3.941 7 N -0.668 5.668 8 C 0.279 3.721 9 C -0.301 4.301 10 C 0.125 3.875 11 N -0.598 5.598 12 H 0.411 0.589 13 C 0.337 3.663 14 C -0.480 4.480 15 H 0.101 0.899 16 C 0.077 3.923 17 N -0.824 5.824 18 Si 0.923 3.077 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.344 4.344 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.024 0.976 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.288 0.712 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 4.986 -2.319 9.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.072 4.072 7 N -0.393 5.393 8 C 0.115 3.885 9 C -0.331 4.331 10 C -0.005 4.005 11 N -0.206 5.206 12 H 0.248 0.752 13 C 0.228 3.772 14 C -0.514 4.514 15 H 0.118 0.882 16 C -0.140 4.140 17 N -0.452 5.452 18 Si 0.747 3.253 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.373 4.373 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.099 0.901 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.753 4.364 -2.878 9.351 hybrid contribution 0.412 0.670 1.211 1.444 sum -7.341 5.034 -1.667 9.056 Atomic orbital electron populations 1.21847 0.95808 1.01377 1.01291 1.21131 0.95050 0.96507 0.98938 1.21881 1.01706 0.95912 1.01031 1.21655 0.96778 0.99731 0.96941 1.21658 0.93144 1.00470 0.99608 1.21782 0.93031 0.97269 0.95089 1.73354 1.02032 1.34462 1.29451 1.20300 0.93823 0.87253 0.87128 1.22290 0.98717 1.08303 1.03812 1.21247 0.84351 0.97493 0.97363 1.42052 1.04685 1.40818 1.33049 0.75241 1.17660 0.91630 0.84108 0.83766 1.19436 0.90510 1.46957 0.94527 0.88155 1.26071 1.02242 0.91003 0.94680 1.69430 1.38994 1.37719 0.99080 0.85990 0.80700 0.78671 0.79910 1.18052 1.19693 1.19669 1.20387 0.90136 1.15117 1.11619 0.92920 0.93120 0.92919 0.91445 0.92118 0.93312 0.92962 0.92461 0.92562 0.92698 0.92429 0.93945 0.95767 0.86476 0.85233 0.90080 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 37.16 0.34 -1.14 16 2 C -0.10 -1.18 2.92 -90.62 -0.26 -1.45 16 3 C -0.15 -1.76 8.95 37.16 0.33 -1.43 16 4 C -0.11 -1.58 4.68 -26.73 -0.13 -1.71 16 5 C -0.11 -1.95 5.29 -26.73 -0.14 -2.09 16 6 C 0.06 1.24 6.24 -4.04 -0.03 1.21 16 7 N -0.67 -16.70 10.62 -57.23 -0.61 -17.31 16 8 C 0.28 7.01 6.80 -82.74 -0.56 6.45 16 9 C -0.30 -6.55 9.37 -37.44 -0.35 -6.91 16 10 C 0.13 2.48 11.15 -16.87 -0.19 2.29 16 11 N -0.60 -13.10 4.80 -10.83 -0.05 -13.15 16 12 H 0.41 8.52 7.04 -40.82 -0.29 8.23 16 13 C 0.34 8.32 6.21 -84.16 -0.52 7.80 16 14 C -0.48 -11.56 9.01 -38.06 -0.34 -11.91 16 15 H 0.10 2.36 7.86 -52.49 -0.41 1.95 16 16 C 0.08 1.72 5.25 -17.29 -0.09 1.63 16 17 N -0.82 -18.65 11.48 55.57 0.64 -18.01 16 18 Si 0.92 16.92 29.57 -169.99 -5.03 11.89 16 19 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 22 C -0.34 -8.93 9.83 -37.83 -0.37 -9.31 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.78 8.14 -51.94 -0.42 0.35 16 32 H 0.05 1.02 6.57 -51.93 -0.34 0.67 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.02 0.49 5.26 -51.93 -0.27 0.22 16 36 H 0.12 2.33 5.92 -52.48 -0.31 2.02 16 37 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.29 5.93 8.29 -40.82 -0.34 5.59 16 39 H 0.11 3.03 8.06 -52.49 -0.42 2.61 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -27.00 317.73 -8.75 -35.75 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.17 Total: 12.60 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.31 Total: -16.56 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.02 Total: -48.47 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.00 -8.75 -35.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381125601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.871 kcal (2) G-P(sol) polarization free energy of solvation -27.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds