Wall clock time and date at job start Mon Mar 30 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46793 * 2 1 4 4 C 1.52997 * 109.46843 * 119.99666 * 2 1 3 5 5 C 1.53006 * 109.46729 * 174.99899 * 4 2 1 6 6 C 1.53004 * 109.46779 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46661 * 180.02562 * 6 5 4 8 8 C 1.32211 * 120.00062 * 113.91127 * 7 6 5 9 9 C 1.46912 * 120.83328 * 356.75616 * 8 7 6 10 10 C 1.34371 * 119.37172 * 180.02562 * 9 8 7 11 11 N 1.36427 * 121.21907 * 359.97438 * 10 9 8 12 12 H 0.96998 * 119.09231 * 180.02562 * 11 10 9 13 13 C 1.37773 * 121.81902 * 0.02562 * 11 10 9 14 14 C 1.40181 * 119.74442 * 180.27267 * 13 11 10 15 15 H 1.07993 * 120.00195 * 215.63715 * 14 13 11 16 16 C 1.40353 * 119.99516 * 35.63610 * 14 13 11 17 17 N 1.30580 * 120.00623 * 7.96281 * 16 14 13 18 18 Si 1.86807 * 119.99860 * 187.95917 * 16 14 13 19 19 H 1.48507 * 109.46960 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46828 * 119.99847 * 18 16 14 21 21 H 1.48499 * 109.47204 * 240.00438 * 18 16 14 22 22 C 1.39066 * 120.51366 * 359.97438 * 13 11 10 23 23 H 1.08998 * 109.46996 * 300.00036 * 1 2 3 24 24 H 1.08999 * 109.46998 * 60.00189 * 1 2 3 25 25 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46996 * 239.99964 * 2 1 3 27 27 H 1.09005 * 109.46757 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47195 * 299.99691 * 3 2 1 29 29 H 1.08998 * 109.47379 * 60.00199 * 3 2 1 30 30 H 1.09004 * 109.47045 * 55.00942 * 4 2 1 31 31 H 1.08989 * 109.47381 * 295.00056 * 4 2 1 32 32 H 1.09001 * 109.47161 * 60.00393 * 5 4 2 33 33 H 1.09006 * 109.47256 * 300.00076 * 5 4 2 34 34 H 1.09001 * 109.47204 * 60.00112 * 6 5 4 35 35 H 1.09006 * 109.47038 * 299.99903 * 6 5 4 36 36 H 1.08005 * 120.31661 * 0.04270 * 9 8 7 37 37 H 1.08000 * 119.39280 * 180.02562 * 10 9 8 38 38 H 0.96998 * 120.00676 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.62696 * 179.97438 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 6 4.0748 -1.5528 2.4370 7 7 5.5349 -1.6573 2.3786 8 6 6.2799 -1.0070 3.2561 9 6 5.6668 -0.1188 4.2528 10 6 6.4519 0.5283 5.1305 11 7 7.8075 0.3751 5.1134 12 1 8.3447 0.8568 5.7616 13 6 8.4344 -0.4449 4.2008 14 6 9.8299 -0.5746 4.2261 15 1 10.3787 -0.6864 3.3027 16 6 10.5140 -0.5591 5.4515 17 7 9.8454 -0.5807 6.5730 18 14 12.3812 -0.5076 5.4783 19 1 12.8959 -0.4889 4.0854 20 1 12.8324 0.7159 6.1887 21 1 12.8995 -1.7082 6.1819 22 6 7.6929 -1.1497 3.2588 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7516 -0.1583 2.1369 32 1 3.9995 0.1676 1.1421 33 1 3.8532 -1.3940 0.3002 34 1 3.6401 -2.5513 2.4825 35 1 3.7864 -0.9901 3.3250 36 1 4.5951 0.0127 4.2800 37 1 6.0016 1.1810 5.8637 38 1 10.3182 -0.5704 7.4199 39 1 8.1825 -1.7926 2.5423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381125601.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:20 Heat of formation + Delta-G solvation = -10.787192 kcal Electronic energy + Delta-G solvation = -17329.626861 eV Core-core repulsion = 14656.167747 eV Total energy + Delta-G solvation = -2673.459115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30594 -38.20346 -36.48011 -35.29167 -32.91501 -32.23667 -29.92173 -28.08103 -27.99694 -26.06496 -23.40744 -22.85244 -21.48407 -20.80757 -19.70145 -18.36188 -17.14658 -16.73437 -16.43705 -16.09685 -15.45615 -15.09980 -14.79005 -14.59084 -14.48547 -14.38982 -13.54238 -13.15382 -13.08864 -12.96442 -12.88389 -12.85515 -12.71035 -12.42231 -12.38322 -11.88888 -11.81318 -11.61862 -11.48399 -11.32630 -11.24868 -10.99939 -9.89536 -9.29667 -8.88043 -7.71380 -6.66853 0.97423 1.07102 1.43625 1.57555 1.58070 2.19138 2.56198 2.93911 3.44379 3.82515 3.97372 4.06809 4.11426 4.19295 4.47635 4.53171 4.63040 4.73091 4.77530 4.79332 4.88676 4.92585 4.97245 5.03761 5.08522 5.11486 5.16159 5.17470 5.27558 5.31308 5.41907 5.54327 5.55575 5.65570 5.84064 6.00510 6.11708 6.42945 6.57913 6.98383 7.16214 7.94078 8.15248 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.051676 B = 0.003695 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.702838 B = 7575.984365 C = 7671.451276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.099 4.099 6 C 0.058 3.942 7 N -0.707 5.707 8 C 0.260 3.740 9 C -0.320 4.320 10 C 0.140 3.860 11 N -0.597 5.597 12 H 0.417 0.583 13 C 0.331 3.669 14 C -0.508 4.508 15 H 0.093 0.907 16 C 0.049 3.951 17 N -0.836 5.836 18 Si 0.995 3.005 19 H -0.262 1.262 20 H -0.255 1.255 21 H -0.270 1.270 22 C -0.388 4.388 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.031 0.969 36 H 0.136 0.864 37 H 0.186 0.814 38 H 0.301 0.699 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 6.392 -0.914 10.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.137 4.137 6 C -0.073 4.073 7 N -0.433 5.433 8 C 0.096 3.904 9 C -0.349 4.349 10 C 0.011 3.989 11 N -0.205 5.205 12 H 0.255 0.745 13 C 0.221 3.779 14 C -0.541 4.541 15 H 0.111 0.889 16 C -0.168 4.168 17 N -0.463 5.463 18 Si 0.815 3.185 19 H -0.186 1.186 20 H -0.179 1.179 21 H -0.195 1.195 22 C -0.417 4.417 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.154 0.846 37 H 0.203 0.797 38 H 0.113 0.887 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.264 5.778 -1.464 10.190 hybrid contribution 0.606 0.203 0.825 1.043 sum -7.659 5.982 -0.639 9.739 Atomic orbital electron populations 1.21800 0.93812 1.02027 1.02216 1.21123 0.96671 0.96226 0.97573 1.21870 1.00407 0.96067 1.02098 1.21589 0.93713 1.00587 0.98374 1.21523 0.95825 0.98925 0.97431 1.21869 0.90962 0.97675 0.96812 1.73242 1.04458 1.35333 1.30262 1.20492 0.93577 0.88160 0.88160 1.22363 0.99861 1.08770 1.03952 1.21950 0.83187 0.96600 0.97182 1.42058 1.05710 1.40185 1.32571 0.74505 1.17742 0.92111 0.84123 0.83904 1.19633 0.90693 1.48358 0.95424 0.88884 1.26802 1.06571 0.89770 0.93613 1.69426 1.40997 1.36087 0.99809 0.84937 0.74743 0.79169 0.79633 1.18588 1.17894 1.19465 1.20346 0.91266 1.17033 1.13053 0.92389 0.91826 0.92450 0.91908 0.94119 0.91709 0.92461 0.91867 0.91935 0.93911 0.93802 0.94114 0.95104 0.84620 0.79669 0.88749 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.19 71.98 0.66 -1.87 16 2 C -0.10 -2.22 2.92 -10.79 -0.03 -2.26 16 3 C -0.15 -3.32 8.95 71.98 0.64 -2.67 16 4 C -0.10 -2.83 4.68 30.60 0.14 -2.69 16 5 C -0.10 -3.55 5.29 30.60 0.16 -3.39 16 6 C 0.06 2.44 6.24 86.38 0.54 2.98 16 7 N -0.71 -36.88 10.62 -334.99 -3.56 -40.44 16 8 C 0.26 13.55 6.80 42.30 0.29 13.84 16 9 C -0.32 -13.78 9.37 23.66 0.22 -13.56 16 10 C 0.14 5.28 11.15 83.09 0.93 6.20 16 11 N -0.60 -25.68 4.80 -188.18 -0.90 -26.58 16 12 H 0.42 16.66 7.04 -92.71 -0.65 16.01 16 13 C 0.33 16.74 6.21 38.88 0.24 16.98 16 14 C -0.51 -24.91 9.01 23.26 0.21 -24.70 16 15 H 0.09 4.56 7.86 -2.91 -0.02 4.53 16 16 C 0.05 2.13 5.25 85.39 0.45 2.58 16 17 N -0.84 -36.54 11.48 21.89 0.25 -36.28 16 18 Si 0.99 33.51 29.57 68.60 2.03 35.54 16 19 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 20 H -0.25 -7.91 7.11 99.48 0.71 -7.20 16 21 H -0.27 -9.01 7.11 99.48 0.71 -8.31 16 22 C -0.39 -21.30 9.83 23.41 0.23 -21.07 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.06 6.57 -2.38 -0.02 1.05 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.62 6.57 -2.39 -0.02 1.60 16 33 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.03 1.25 5.26 -2.38 -0.01 1.24 16 36 H 0.14 5.22 5.92 -2.91 -0.02 5.21 16 37 H 0.19 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.30 11.70 8.29 -92.71 -0.77 10.93 16 39 H 0.09 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -60.35 317.73 2.88 -57.47 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: 0.37 Total: 39.91 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 4.68 Total: -29.62 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -4.21 Total: -103.30 kcal Atomic # 14 Polarization: 33.51 SS G_CDS: 2.03 Total: 35.54 kcal Total: -60.35 2.88 -57.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381125601.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.686 kcal (2) G-P(sol) polarization free energy of solvation -60.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds