Wall clock time and date at job start Mon Mar 30 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47072 * 2 1 4 4 C 1.52998 * 109.47358 * 120.00433 * 2 1 3 5 5 H 1.09000 * 109.46751 * 295.22201 * 4 2 1 6 6 N 1.46905 * 109.47132 * 175.21829 * 4 2 1 7 7 C 1.46904 * 110.99718 * 154.64510 * 6 4 2 8 8 C 1.52995 * 109.46951 * 184.03453 * 7 6 4 9 9 C 1.50702 * 109.47229 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99500 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00077 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99931 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99949 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47473 * 89.99950 * 13 11 9 15 15 H 1.48498 * 109.47229 * 210.00249 * 13 11 9 16 16 H 1.48504 * 109.47151 * 330.00017 * 13 11 9 17 17 C 1.50698 * 109.46805 * 55.21792 * 4 2 1 18 18 C 1.38655 * 120.78980 * 259.99705 * 17 4 2 19 19 C 1.38200 * 119.16208 * 180.02562 * 18 17 4 20 20 N 1.31875 * 120.76573 * 0.02562 * 19 18 17 21 21 C 1.31875 * 121.72446 * 359.97438 * 20 19 18 22 22 C 1.38201 * 120.76363 * 359.97438 * 21 20 19 23 23 H 1.08995 * 109.46780 * 299.99915 * 1 2 3 24 24 H 1.09007 * 109.46871 * 59.99542 * 1 2 3 25 25 H 1.08995 * 109.47029 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47183 * 240.00377 * 2 1 3 27 27 H 1.09000 * 109.46573 * 180.18642 * 3 2 1 28 28 H 1.08994 * 109.47417 * 300.18366 * 3 2 1 29 29 H 1.09002 * 109.46894 * 60.18821 * 3 2 1 30 30 H 1.00898 * 111.00022 * 30.69338 * 6 4 2 31 31 H 1.09000 * 109.47018 * 304.04260 * 7 6 4 32 32 H 1.08999 * 109.46773 * 64.03929 * 7 6 4 33 33 H 1.09002 * 109.47189 * 300.00375 * 8 7 6 34 34 H 1.09003 * 109.46598 * 60.00311 * 8 7 6 35 35 H 0.97005 * 119.99993 * 180.02562 * 12 11 9 36 36 H 1.08000 * 120.41635 * 0.02562 * 18 17 4 37 37 H 1.07998 * 119.61904 * 180.02562 * 19 18 17 38 38 H 1.07997 * 119.61424 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.41823 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7483 -0.1605 2.1371 6 7 3.5046 -0.8221 1.1928 7 6 4.0769 -0.9329 2.5412 8 6 5.6041 -0.9343 2.4484 9 6 6.1912 -1.0486 3.8316 10 1 5.5402 -1.1142 4.6908 11 6 7.5595 -1.0696 4.0002 12 7 8.3522 -0.9892 2.9539 13 14 8.2872 -1.2120 5.7146 14 1 8.4727 -2.6452 6.0563 15 1 9.6004 -0.5198 5.7540 16 1 7.3671 -0.5841 6.6967 17 6 1.4434 -2.1038 1.3097 18 6 0.3561 -2.3724 2.1271 19 6 -0.1640 -3.6525 2.1570 20 7 0.3620 -4.6117 1.4205 21 6 1.3959 -4.3925 0.6318 22 6 1.9685 -3.1374 0.5492 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0033 28 1 1.6741 1.9573 -0.8883 29 1 1.6794 1.9554 0.8917 30 1 3.9019 -0.0399 0.6945 31 1 3.7502 -0.0864 3.1452 32 1 3.7402 -1.8607 3.0036 33 1 5.9306 -1.7808 1.8444 34 1 5.9407 -0.0065 1.9859 35 1 9.3148 -1.0043 3.0724 36 1 -0.0788 -1.5912 2.7329 37 1 -1.0110 -3.8698 2.7908 38 1 1.7998 -5.2033 0.0437 39 1 2.8148 -2.9641 -0.0989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381154941.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:35 Heat of formation + Delta-G solvation = 13.099584 kcal Electronic energy + Delta-G solvation = -17972.655899 eV Core-core repulsion = 15300.232592 eV Total energy + Delta-G solvation = -2672.423306 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.19936 -37.66937 -34.36062 -32.66633 -32.09245 -30.99515 -29.14568 -27.17564 -25.73404 -23.72384 -23.19287 -22.02324 -20.62172 -19.70700 -16.77565 -16.49123 -15.96746 -15.42006 -15.32636 -14.72133 -14.42825 -14.08251 -13.70712 -13.43598 -13.37271 -12.88597 -12.70079 -12.35951 -12.23538 -11.98512 -11.40827 -11.18945 -11.17915 -10.96799 -10.89733 -10.71604 -10.54164 -10.07562 -9.50444 -9.28489 -9.25914 -9.11253 -8.93774 -8.37987 -7.96498 -6.02189 -4.04737 1.33142 1.47347 3.31005 3.37120 3.40145 3.99450 4.35698 4.50270 4.61777 4.70977 4.87569 4.98404 5.05761 5.25888 5.34011 5.34710 5.42204 5.53038 5.55931 5.66052 5.76838 5.78610 5.86713 5.99988 6.02637 6.15596 6.23056 6.24733 6.30632 6.38558 6.61280 6.90389 6.93674 7.40768 7.67721 7.77775 7.89343 8.03630 8.13744 8.40514 9.02075 9.59314 11.09202 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.005416 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.070194 B = 5168.241555 C = 5958.347713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.152 4.152 4 C 0.124 3.876 5 H 0.052 0.948 6 N -0.685 5.685 7 C 0.068 3.932 8 C 0.026 3.974 9 C -0.522 4.522 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.017 4.017 18 C -0.173 4.173 19 C 0.088 3.912 20 N -0.494 5.494 21 C 0.088 3.912 22 C -0.136 4.136 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.342 0.658 31 H 0.016 0.984 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.254 1.146 -6.306 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.209 4.209 4 C 0.014 3.986 5 H 0.070 0.930 6 N -0.317 5.317 7 C -0.060 4.060 8 C -0.012 4.012 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.026 4.026 18 C -0.194 4.194 19 C -0.068 4.068 20 N -0.203 5.203 21 C -0.068 4.068 22 C -0.156 4.156 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.162 0.838 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.408 -0.349 -6.422 17.623 hybrid contribution 0.831 1.655 1.353 2.293 sum -15.577 1.306 -5.069 16.433 Atomic orbital electron populations 1.21848 0.94956 1.01921 1.01591 1.21241 0.95886 0.96032 0.98006 1.21905 1.01603 0.95546 1.01854 1.20511 0.89887 0.90887 0.97314 0.93002 1.60596 1.01925 1.49203 1.20024 1.22196 0.98739 0.98808 0.86287 1.19070 0.87380 0.97582 0.97137 1.21152 0.91530 1.50572 0.92793 0.92828 1.24987 0.97264 0.95246 0.96772 1.69968 1.03667 1.50490 1.29111 0.86594 0.78515 0.78218 0.84677 1.20595 1.21183 1.19933 1.20279 0.93044 0.96018 0.93252 1.21993 0.98121 0.98500 1.00747 1.22584 0.98759 0.88904 0.96600 1.67614 1.10972 1.35270 1.06487 1.22755 0.92082 0.96231 0.95744 1.22054 1.00375 0.93011 1.00180 0.92739 0.92669 0.92481 0.90164 0.91995 0.92325 0.92689 0.83753 0.96537 0.92530 0.95665 0.96831 0.92972 0.85513 0.83376 0.83138 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.67 37.16 0.32 -1.11 16 2 C -0.09 -1.04 2.62 -90.62 -0.24 -1.28 16 3 C -0.15 -1.60 9.02 37.16 0.34 -1.26 16 4 C 0.12 1.71 1.88 -68.86 -0.13 1.59 16 5 H 0.05 0.74 7.63 -51.93 -0.40 0.35 16 6 N -0.68 -11.47 5.67 -107.95 -0.61 -12.08 16 7 C 0.07 1.41 5.46 -3.82 -0.02 1.38 16 8 C 0.03 0.66 5.19 -27.88 -0.14 0.52 16 9 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 10 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.02 -0.24 3.69 -104.32 -0.39 -0.62 16 18 C -0.17 -2.21 8.85 -39.44 -0.35 -2.56 16 19 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 20 N -0.49 -7.21 10.36 -13.25 -0.14 -7.35 16 21 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 22 C -0.14 -1.95 9.43 -39.44 -0.37 -2.32 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.60 6.58 -51.93 -0.34 0.26 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.70 6.42 -51.93 -0.33 0.37 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.34 5.51 6.40 -39.29 -0.25 5.26 16 31 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 32 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.14 2.03 7.80 -52.49 -0.41 1.62 16 LS Contribution 320.01 15.07 4.82 4.82 Total: -1.00 -30.70 320.01 -8.33 -39.03 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.33 Total: 2.18 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -1.78 Total: -17.23 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.01 Total: -45.52 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.70 -8.33 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381154941.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.128 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds