Wall clock time and date at job start Mon Mar 30 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47072 * 2 1 4 4 C 1.52998 * 109.47358 * 120.00433 * 2 1 3 5 5 H 1.09000 * 109.46751 * 295.22201 * 4 2 1 6 6 N 1.46905 * 109.47132 * 175.21829 * 4 2 1 7 7 C 1.46904 * 110.99718 * 154.64510 * 6 4 2 8 8 C 1.52995 * 109.46951 * 184.03453 * 7 6 4 9 9 C 1.50702 * 109.47229 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99500 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00077 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99931 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99949 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47473 * 89.99950 * 13 11 9 15 15 H 1.48498 * 109.47229 * 210.00249 * 13 11 9 16 16 H 1.48504 * 109.47151 * 330.00017 * 13 11 9 17 17 C 1.50698 * 109.46805 * 55.21792 * 4 2 1 18 18 C 1.38655 * 120.78980 * 259.99705 * 17 4 2 19 19 C 1.38200 * 119.16208 * 180.02562 * 18 17 4 20 20 N 1.31875 * 120.76573 * 0.02562 * 19 18 17 21 21 C 1.31875 * 121.72446 * 359.97438 * 20 19 18 22 22 C 1.38201 * 120.76363 * 359.97438 * 21 20 19 23 23 H 1.08995 * 109.46780 * 299.99915 * 1 2 3 24 24 H 1.09007 * 109.46871 * 59.99542 * 1 2 3 25 25 H 1.08995 * 109.47029 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47183 * 240.00377 * 2 1 3 27 27 H 1.09000 * 109.46573 * 180.18642 * 3 2 1 28 28 H 1.08994 * 109.47417 * 300.18366 * 3 2 1 29 29 H 1.09002 * 109.46894 * 60.18821 * 3 2 1 30 30 H 1.00898 * 111.00022 * 30.69338 * 6 4 2 31 31 H 1.09000 * 109.47018 * 304.04260 * 7 6 4 32 32 H 1.08999 * 109.46773 * 64.03929 * 7 6 4 33 33 H 1.09002 * 109.47189 * 300.00375 * 8 7 6 34 34 H 1.09003 * 109.46598 * 60.00311 * 8 7 6 35 35 H 0.97005 * 119.99993 * 180.02562 * 12 11 9 36 36 H 1.08000 * 120.41635 * 0.02562 * 18 17 4 37 37 H 1.07998 * 119.61904 * 180.02562 * 19 18 17 38 38 H 1.07997 * 119.61424 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.41823 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7483 -0.1605 2.1371 6 7 3.5046 -0.8221 1.1928 7 6 4.0769 -0.9329 2.5412 8 6 5.6041 -0.9343 2.4484 9 6 6.1912 -1.0486 3.8316 10 1 5.5402 -1.1142 4.6908 11 6 7.5595 -1.0696 4.0002 12 7 8.3522 -0.9892 2.9539 13 14 8.2872 -1.2120 5.7146 14 1 8.4727 -2.6452 6.0563 15 1 9.6004 -0.5198 5.7540 16 1 7.3671 -0.5841 6.6967 17 6 1.4434 -2.1038 1.3097 18 6 0.3561 -2.3724 2.1271 19 6 -0.1640 -3.6525 2.1570 20 7 0.3620 -4.6117 1.4205 21 6 1.3959 -4.3925 0.6318 22 6 1.9685 -3.1374 0.5492 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0033 28 1 1.6741 1.9573 -0.8883 29 1 1.6794 1.9554 0.8917 30 1 3.9019 -0.0399 0.6945 31 1 3.7502 -0.0864 3.1452 32 1 3.7402 -1.8607 3.0036 33 1 5.9306 -1.7808 1.8444 34 1 5.9407 -0.0065 1.9859 35 1 9.3148 -1.0043 3.0724 36 1 -0.0788 -1.5912 2.7329 37 1 -1.0110 -3.8698 2.7908 38 1 1.7998 -5.2033 0.0437 39 1 2.8148 -2.9641 -0.0989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381154941.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:35 Heat of formation + Delta-G solvation = -5.439718 kcal Electronic energy + Delta-G solvation = -17973.459823 eV Core-core repulsion = 15300.232592 eV Total energy + Delta-G solvation = -2673.227231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25402 -38.81885 -36.03039 -34.39203 -33.27009 -32.03548 -30.91244 -28.01867 -27.24272 -25.34911 -24.28699 -23.19332 -22.30794 -20.77054 -18.55345 -17.83965 -17.22469 -16.72342 -16.40987 -16.29113 -15.81902 -15.40615 -14.98685 -14.57231 -14.44445 -14.22228 -14.05566 -13.85497 -13.33962 -13.09202 -12.95659 -12.84806 -12.53117 -12.41927 -12.12567 -12.04514 -11.84473 -11.61445 -11.40291 -11.27343 -10.58646 -10.37963 -10.28994 -9.97187 -9.38356 -8.22242 -6.33457 0.30268 0.40564 1.38872 1.40171 1.50956 2.38754 2.94422 3.11425 3.20509 3.64130 3.69923 3.91545 3.98872 4.11084 4.30586 4.33551 4.37949 4.48400 4.51065 4.62119 4.74940 4.78546 4.80594 4.95532 4.98650 5.00430 5.03117 5.15748 5.20995 5.36175 5.39626 5.40858 5.51884 5.66239 5.78162 5.88133 6.12540 6.25018 6.51868 6.83207 7.10143 7.35843 8.89699 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.005416 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.070194 B = 5168.241555 C = 5958.347713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.150 4.150 4 C 0.127 3.873 5 H 0.053 0.947 6 N -0.686 5.686 7 C 0.091 3.909 8 C 0.033 3.967 9 C -0.545 4.545 10 H 0.057 0.943 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.964 3.036 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.264 1.264 17 C -0.029 4.029 18 C -0.172 4.172 19 C 0.085 3.915 20 N -0.514 5.514 21 C 0.080 3.920 22 C -0.151 4.151 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.346 0.654 31 H 0.020 0.980 32 H 0.045 0.955 33 H -0.006 1.006 34 H -0.005 1.005 35 H 0.264 0.736 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.167 0.833 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 1.597 -5.357 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 C -0.207 4.207 4 C 0.018 3.982 5 H 0.071 0.929 6 N -0.319 5.319 7 C -0.038 4.038 8 C -0.004 4.004 9 C -0.584 4.584 10 H 0.075 0.925 11 C -0.195 4.195 12 N -0.569 5.569 13 Si 0.788 3.212 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.188 1.188 17 C -0.037 4.037 18 C -0.193 4.193 19 C -0.071 4.071 20 N -0.224 5.224 21 C -0.075 4.075 22 C -0.171 4.171 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.167 0.833 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.012 0.988 34 H 0.013 0.987 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.195 0.805 38 H 0.185 0.815 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.838 0.104 -5.485 18.663 hybrid contribution 1.239 1.511 1.010 2.200 sum -16.599 1.615 -4.475 17.267 Atomic orbital electron populations 1.21791 0.93373 1.01774 1.02731 1.21199 0.97068 0.95993 0.96296 1.21898 1.00769 0.95192 1.02887 1.20579 0.87544 0.91395 0.98725 0.92910 1.60460 1.04101 1.49751 1.17616 1.21729 0.95376 0.98298 0.88388 1.18905 0.90849 0.95140 0.95506 1.21581 0.92223 1.50684 0.93902 0.92517 1.25923 0.97751 0.94625 1.01164 1.70095 1.04088 1.51203 1.31559 0.85468 0.77809 0.78459 0.79439 1.19930 1.20494 1.18780 1.20401 0.93742 0.95870 0.93728 1.22228 0.97545 0.99161 1.00321 1.23101 0.99173 0.88652 0.96221 1.67667 1.11419 1.36142 1.07177 1.23028 0.92047 0.96577 0.95893 1.22074 1.00620 0.93655 1.00776 0.91932 0.91212 0.93226 0.90727 0.93283 0.90558 0.92400 0.83339 0.96215 0.93643 0.98751 0.98685 0.92701 0.83283 0.80537 0.81543 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.67 71.98 0.62 -1.78 16 2 C -0.09 -1.83 2.62 -10.79 -0.03 -1.85 16 3 C -0.15 -2.93 9.02 71.98 0.65 -2.28 16 4 C 0.13 3.39 1.88 44.17 0.08 3.48 16 5 H 0.05 1.42 7.63 -2.39 -0.02 1.41 16 6 N -0.69 -23.13 5.67 -495.45 -2.81 -25.94 16 7 C 0.09 3.81 5.46 86.30 0.47 4.28 16 8 C 0.03 1.77 5.19 29.85 0.15 1.93 16 9 C -0.55 -31.33 9.11 25.60 0.23 -31.10 16 10 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 11 C 0.00 0.21 5.46 84.65 0.46 0.67 16 12 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 13 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 17 C -0.03 -0.77 3.69 -19.67 -0.07 -0.84 16 18 C -0.17 -4.07 8.85 22.36 0.20 -3.87 16 19 C 0.09 2.03 11.18 84.68 0.95 2.97 16 20 N -0.51 -14.44 10.36 -195.84 -2.03 -16.47 16 21 C 0.08 2.19 11.18 84.68 0.95 3.14 16 22 C -0.15 -4.31 9.43 22.36 0.21 -4.10 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.05 0.94 6.58 -2.39 -0.02 0.93 16 26 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.05 1.08 6.42 -2.39 -0.02 1.06 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.35 11.28 6.40 -89.70 -0.57 10.70 16 31 H 0.02 0.81 7.96 -2.39 -0.02 0.79 16 32 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 36 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.13 3.94 7.80 -2.91 -0.02 3.92 16 Total: -1.00 -65.77 320.01 2.79 -62.98 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.44 Total: 18.66 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 4.88 Total: -29.36 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -4.55 Total: -98.77 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.77 2.79 -62.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381154941.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.543 kcal (2) G-P(sol) polarization free energy of solvation -65.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds