Wall clock time and date at job start Mon Mar 30 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47212 * 2 1 4 4 C 1.53003 * 109.47212 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47212 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47212 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47288 * 180.02562 * 6 5 4 8 8 C 1.32201 * 120.00066 * 113.91000 * 7 6 5 9 9 C 1.46915 * 120.83394 * 356.76015 * 8 7 6 10 10 C 1.34379 * 119.36882 * 180.02562 * 9 8 7 11 11 N 1.36424 * 121.22278 * 0.02562 * 10 9 8 12 12 H 0.96998 * 119.08960 * 179.97438 * 11 10 9 13 13 C 1.37776 * 121.81791 * 359.97438 * 11 10 9 14 14 C 1.40181 * 119.74060 * 180.28045 * 13 11 10 15 15 H 1.07995 * 119.99540 * 215.64025 * 14 13 11 16 16 C 1.40351 * 119.99899 * 35.63396 * 14 13 11 17 17 N 1.30580 * 120.00230 * 7.96364 * 16 14 13 18 18 Si 1.86801 * 119.99603 * 187.95821 * 16 14 13 19 19 H 1.48502 * 109.46929 * 90.00338 * 18 16 14 20 20 H 1.48501 * 109.47319 * 210.00181 * 18 16 14 21 21 H 1.48507 * 109.47345 * 330.00339 * 18 16 14 22 22 C 1.39065 * 120.51417 * 0.02562 * 13 11 10 23 23 H 1.09001 * 109.46689 * 300.00144 * 1 2 3 24 24 H 1.09001 * 109.47160 * 59.99693 * 1 2 3 25 25 H 1.08991 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46689 * 239.99856 * 2 1 3 27 27 H 1.09001 * 109.47160 * 120.00307 * 2 1 3 28 28 H 1.09001 * 109.47411 * 60.00298 * 3 2 1 29 29 H 1.09001 * 109.47308 * 300.00216 * 3 2 1 30 30 H 1.09001 * 109.46689 * 59.99856 * 4 3 2 31 31 H 1.09001 * 109.47160 * 300.00307 * 4 3 2 32 32 H 1.08996 * 109.47163 * 59.99878 * 5 4 3 33 33 H 1.09001 * 109.47308 * 300.00216 * 5 4 3 34 34 H 1.09001 * 109.46689 * 59.99856 * 6 5 4 35 35 H 1.09001 * 109.47160 * 300.00307 * 6 5 4 36 36 H 1.07999 * 120.31720 * 0.03895 * 9 8 7 37 37 H 1.08000 * 119.38824 * 180.02562 * 10 9 8 38 38 H 0.97005 * 119.99978 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.63061 * 179.97438 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8849 0.0000 7 7 6.0985 4.2661 0.0012 8 6 6.7563 4.7337 1.0483 9 6 6.9466 3.9078 2.2483 10 6 7.6196 4.4128 3.2960 11 7 8.1288 5.6781 3.2660 12 1 8.6092 6.0117 4.0399 13 6 7.9796 6.4953 2.1668 14 6 8.5257 7.7863 2.1808 15 1 8.0072 8.5972 1.6911 16 6 9.7463 8.0248 2.8312 17 7 10.4495 7.0237 3.2877 18 14 10.3650 9.7746 3.0437 19 1 9.8584 10.3263 4.3260 20 1 11.8499 9.7766 3.0562 21 1 9.8783 10.6119 1.9179 22 6 7.2959 6.0475 1.0417 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8909 31 1 3.9338 0.9284 0.8891 32 1 3.7171 3.3982 0.8904 33 1 3.7164 3.3993 -0.8895 34 1 5.9734 2.3715 -0.8902 35 1 5.9735 2.3706 0.8897 36 1 6.5496 2.9042 2.2880 37 1 7.7601 3.8058 4.1782 38 1 11.2930 7.1886 3.7376 39 1 7.1774 6.6866 0.1792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381499752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:23 Heat of formation + Delta-G solvation = 0.594619 kcal Electronic energy + Delta-G solvation = -17035.384050 eV Core-core repulsion = 14362.418488 eV Total energy + Delta-G solvation = -2672.965562 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.54029 -36.48716 -34.84858 -33.64380 -32.15131 -30.54240 -29.13344 -27.08186 -25.83941 -23.35882 -21.59693 -21.11916 -20.70119 -19.72718 -17.93765 -16.57433 -15.80494 -15.41994 -14.89568 -14.65542 -13.97562 -13.89990 -13.60677 -13.12087 -12.85838 -12.82695 -12.43741 -12.09731 -11.87457 -11.48441 -11.39744 -11.23511 -11.07860 -10.95812 -10.75777 -10.70606 -10.52501 -10.45310 -10.16847 -9.94801 -9.62118 -9.30536 -8.11755 -7.49633 -7.14568 -5.90003 -4.77210 2.66761 2.75317 2.93669 2.98211 3.18405 3.72878 4.29516 4.66796 4.81939 4.92188 5.09323 5.29887 5.33876 5.50004 5.59478 5.62424 5.71910 5.74706 5.92234 5.99409 6.03838 6.09613 6.20717 6.31378 6.35664 6.48287 6.53311 6.60973 6.74086 6.79201 6.88108 6.93270 6.99759 7.42990 7.74161 7.79819 7.99603 8.25825 8.38789 8.80815 8.92057 9.74710 9.87203 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.057081 B = 0.003321 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.417137 B = 8430.396800 C = 8581.102532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.060 3.940 7 N -0.669 5.669 8 C 0.279 3.721 9 C -0.301 4.301 10 C 0.125 3.875 11 N -0.598 5.598 12 H 0.411 0.589 13 C 0.337 3.663 14 C -0.481 4.481 15 H 0.100 0.900 16 C 0.077 3.923 17 N -0.824 5.824 18 Si 0.924 3.076 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.258 1.258 22 C -0.344 4.344 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.025 0.975 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.289 0.711 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 -6.600 2.287 10.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.072 4.072 7 N -0.394 5.394 8 C 0.115 3.885 9 C -0.332 4.332 10 C -0.004 4.004 11 N -0.206 5.206 12 H 0.248 0.752 13 C 0.228 3.772 14 C -0.514 4.514 15 H 0.118 0.882 16 C -0.140 4.140 17 N -0.452 5.452 18 Si 0.748 3.252 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.182 1.182 22 C -0.373 4.373 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.100 0.900 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.430 -6.528 1.467 9.998 hybrid contribution 0.792 0.063 1.201 1.440 sum -6.638 -6.465 2.668 9.642 Atomic orbital electron populations 1.21783 0.96236 1.01210 1.01754 1.21554 0.95511 0.97450 1.01782 1.21628 0.96076 0.96085 1.01909 1.21607 0.94632 0.97996 1.01380 1.21610 0.97032 0.94698 1.01488 1.21778 0.93329 0.93776 0.98273 1.73348 1.27552 1.11612 1.26857 1.20300 0.87956 0.92601 0.87614 1.22292 1.11929 1.01752 0.97178 1.21250 0.94335 0.86500 0.98359 1.42051 1.49777 1.11521 1.17219 0.75239 1.17660 0.87666 0.88093 0.83757 1.19403 1.04823 0.94587 1.32632 0.88190 1.26071 0.95851 1.00053 0.92034 1.69428 1.13076 1.32969 1.29747 0.86024 0.78123 0.81082 0.79960 1.19174 1.20126 1.18168 1.20386 1.21042 0.96754 0.99070 0.92845 0.92836 0.93086 0.92222 0.92238 0.92238 0.92185 0.92449 0.92608 0.93054 0.92347 0.93894 0.95736 0.86472 0.85219 0.90026 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -1.00 16 2 C -0.13 -1.28 5.93 -26.73 -0.16 -1.44 16 3 C -0.12 -1.44 5.21 -26.73 -0.14 -1.58 16 4 C -0.12 -1.65 5.21 -26.73 -0.14 -1.79 16 5 C -0.11 -1.96 5.54 -26.73 -0.15 -2.11 16 6 C 0.06 1.24 6.24 -4.04 -0.03 1.22 16 7 N -0.67 -16.78 10.62 -57.24 -0.61 -17.39 16 8 C 0.28 7.04 6.80 -82.74 -0.56 6.47 16 9 C -0.30 -6.57 9.37 -37.43 -0.35 -6.92 16 10 C 0.13 2.48 11.15 -16.87 -0.19 2.30 16 11 N -0.60 -13.09 4.80 -10.83 -0.05 -13.14 16 12 H 0.41 8.52 7.04 -40.82 -0.29 8.23 16 13 C 0.34 8.33 6.21 -84.16 -0.52 7.80 16 14 C -0.48 -11.57 9.01 -38.06 -0.34 -11.91 16 15 H 0.10 2.35 7.86 -52.49 -0.41 1.93 16 16 C 0.08 1.72 5.25 -17.29 -0.09 1.63 16 17 N -0.82 -18.66 11.48 55.57 0.64 -18.03 16 18 Si 0.92 16.94 29.57 -169.99 -5.03 11.91 16 19 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 20 H -0.28 -5.04 7.11 56.52 0.40 -4.63 16 21 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 22 C -0.34 -8.94 9.83 -37.82 -0.37 -9.32 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.02 0.50 5.26 -51.93 -0.27 0.23 16 36 H 0.12 2.33 5.92 -52.49 -0.31 2.02 16 37 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.29 5.96 8.29 -40.82 -0.34 5.63 16 39 H 0.11 3.04 8.06 -52.49 -0.42 2.61 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -27.05 321.66 -9.21 -36.26 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -6.34 Total: 12.17 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -2.67 Total: -16.64 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.02 Total: -48.55 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.05 -9.21 -36.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381499752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.857 kcal (2) G-P(sol) polarization free energy of solvation -27.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds