Wall clock time and date at job start Mon Mar 30 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47212 * 2 1 4 4 C 1.53003 * 109.47212 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47212 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47212 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47288 * 180.02562 * 6 5 4 8 8 C 1.32201 * 120.00066 * 113.91000 * 7 6 5 9 9 C 1.46915 * 120.83394 * 356.76015 * 8 7 6 10 10 C 1.34379 * 119.36882 * 180.02562 * 9 8 7 11 11 N 1.36424 * 121.22278 * 0.02562 * 10 9 8 12 12 H 0.96998 * 119.08960 * 179.97438 * 11 10 9 13 13 C 1.37776 * 121.81791 * 359.97438 * 11 10 9 14 14 C 1.40181 * 119.74060 * 180.28045 * 13 11 10 15 15 H 1.07995 * 119.99540 * 215.64025 * 14 13 11 16 16 C 1.40351 * 119.99899 * 35.63396 * 14 13 11 17 17 N 1.30580 * 120.00230 * 7.96364 * 16 14 13 18 18 Si 1.86801 * 119.99603 * 187.95821 * 16 14 13 19 19 H 1.48502 * 109.46929 * 90.00338 * 18 16 14 20 20 H 1.48501 * 109.47319 * 210.00181 * 18 16 14 21 21 H 1.48507 * 109.47345 * 330.00339 * 18 16 14 22 22 C 1.39065 * 120.51417 * 0.02562 * 13 11 10 23 23 H 1.09001 * 109.46689 * 300.00144 * 1 2 3 24 24 H 1.09001 * 109.47160 * 59.99693 * 1 2 3 25 25 H 1.08991 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46689 * 239.99856 * 2 1 3 27 27 H 1.09001 * 109.47160 * 120.00307 * 2 1 3 28 28 H 1.09001 * 109.47411 * 60.00298 * 3 2 1 29 29 H 1.09001 * 109.47308 * 300.00216 * 3 2 1 30 30 H 1.09001 * 109.46689 * 59.99856 * 4 3 2 31 31 H 1.09001 * 109.47160 * 300.00307 * 4 3 2 32 32 H 1.08996 * 109.47163 * 59.99878 * 5 4 3 33 33 H 1.09001 * 109.47308 * 300.00216 * 5 4 3 34 34 H 1.09001 * 109.46689 * 59.99856 * 6 5 4 35 35 H 1.09001 * 109.47160 * 300.00307 * 6 5 4 36 36 H 1.07999 * 120.31720 * 0.03895 * 9 8 7 37 37 H 1.08000 * 119.38824 * 180.02562 * 10 9 8 38 38 H 0.97005 * 119.99978 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.63061 * 179.97438 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8849 0.0000 7 7 6.0985 4.2661 0.0012 8 6 6.7563 4.7337 1.0483 9 6 6.9466 3.9078 2.2483 10 6 7.6196 4.4128 3.2960 11 7 8.1288 5.6781 3.2660 12 1 8.6092 6.0117 4.0399 13 6 7.9796 6.4953 2.1668 14 6 8.5257 7.7863 2.1808 15 1 8.0072 8.5972 1.6911 16 6 9.7463 8.0248 2.8312 17 7 10.4495 7.0237 3.2877 18 14 10.3650 9.7746 3.0437 19 1 9.8584 10.3263 4.3260 20 1 11.8499 9.7766 3.0562 21 1 9.8783 10.6119 1.9179 22 6 7.2959 6.0475 1.0417 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8909 31 1 3.9338 0.9284 0.8891 32 1 3.7171 3.3982 0.8904 33 1 3.7164 3.3993 -0.8895 34 1 5.9734 2.3715 -0.8902 35 1 5.9735 2.3706 0.8897 36 1 6.5496 2.9042 2.2880 37 1 7.7601 3.8058 4.1782 38 1 11.2930 7.1886 3.7376 39 1 7.1774 6.6866 0.1792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381499752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:23 Heat of formation + Delta-G solvation = -14.078919 kcal Electronic energy + Delta-G solvation = -17036.020342 eV Core-core repulsion = 14362.418488 eV Total energy + Delta-G solvation = -2673.601855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30412 -37.75158 -36.36465 -35.31325 -33.50187 -32.31417 -30.62764 -28.60711 -27.47029 -24.71146 -23.28716 -22.36488 -21.86354 -21.36942 -19.71410 -18.35928 -17.13560 -16.92427 -16.57978 -16.13020 -15.47006 -15.08598 -14.88182 -14.59666 -14.47002 -14.12091 -13.65882 -13.47847 -13.29492 -13.04274 -12.86287 -12.72836 -12.47292 -12.31897 -12.23833 -11.89000 -11.82120 -11.67230 -11.51179 -11.36063 -11.27452 -10.99393 -9.89753 -9.30044 -8.88080 -7.71641 -6.66997 0.97757 1.07103 1.43528 1.55474 1.59707 2.18905 2.56053 2.93942 3.44146 3.79888 3.98106 4.10418 4.18647 4.20499 4.36853 4.52391 4.56600 4.61986 4.73403 4.83971 4.90266 4.95174 4.95957 5.02533 5.09918 5.13587 5.15426 5.16810 5.28518 5.30891 5.42960 5.48535 5.52977 5.65419 5.83811 6.00343 6.11581 6.42747 6.57705 6.98241 7.16168 7.93819 8.15037 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.057081 B = 0.003321 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.417137 B = 8430.396800 C = 8581.102532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.109 4.109 5 C -0.100 4.100 6 C 0.058 3.942 7 N -0.708 5.708 8 C 0.260 3.740 9 C -0.321 4.321 10 C 0.140 3.860 11 N -0.597 5.597 12 H 0.417 0.583 13 C 0.330 3.670 14 C -0.508 4.508 15 H 0.093 0.907 16 C 0.049 3.951 17 N -0.836 5.836 18 Si 0.995 3.005 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.265 1.265 22 C -0.388 4.388 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.032 0.968 36 H 0.136 0.864 37 H 0.187 0.813 38 H 0.301 0.699 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.850 -7.329 4.100 10.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.147 4.147 5 C -0.138 4.138 6 C -0.073 4.073 7 N -0.434 5.434 8 C 0.097 3.903 9 C -0.350 4.350 10 C 0.011 3.989 11 N -0.205 5.205 12 H 0.255 0.745 13 C 0.221 3.779 14 C -0.541 4.541 15 H 0.111 0.889 16 C -0.168 4.168 17 N -0.463 5.463 18 Si 0.815 3.185 19 H -0.177 1.177 20 H -0.193 1.193 21 H -0.189 1.189 22 C -0.417 4.417 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.154 0.846 37 H 0.204 0.796 38 H 0.113 0.887 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.037 -7.289 3.291 10.652 hybrid contribution 0.742 0.310 0.639 1.027 sum -6.295 -6.978 3.930 10.187 Atomic orbital electron populations 1.21777 0.95238 1.02091 1.01822 1.21526 0.96391 0.95869 1.02236 1.21595 0.94518 0.97620 1.01695 1.21529 0.96004 0.95105 1.02049 1.21493 0.94916 0.97205 1.00179 1.21864 0.95153 0.91860 0.98437 1.73236 1.28147 1.14125 1.27930 1.20492 0.87930 0.92770 0.89147 1.22368 1.13566 1.02413 0.96655 1.21956 0.91813 0.85666 0.99467 1.42055 1.49821 1.12150 1.16432 0.74500 1.17749 0.87188 0.88835 0.84167 1.19607 1.06134 0.94419 1.33940 0.88859 1.26806 0.95087 1.04043 0.90852 1.69427 1.13459 1.34716 1.28697 0.84974 0.77689 0.75794 0.79999 1.17719 1.19275 1.18946 1.20344 1.24233 0.97739 0.99367 0.92829 0.92782 0.91813 0.91769 0.91797 0.92541 0.92410 0.91775 0.91875 0.94422 0.93569 0.93985 0.95036 0.84600 0.79642 0.88746 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 71.98 0.71 -1.71 16 2 C -0.12 -2.27 5.93 30.59 0.18 -2.08 16 3 C -0.12 -2.68 5.21 30.59 0.16 -2.52 16 4 C -0.11 -2.94 5.21 30.59 0.16 -2.78 16 5 C -0.10 -3.59 5.54 30.59 0.17 -3.42 16 6 C 0.06 2.44 6.24 86.38 0.54 2.98 16 7 N -0.71 -36.99 10.62 -335.01 -3.56 -40.55 16 8 C 0.26 13.57 6.80 42.30 0.29 13.86 16 9 C -0.32 -13.79 9.37 23.66 0.22 -13.57 16 10 C 0.14 5.28 11.15 83.10 0.93 6.20 16 11 N -0.60 -25.61 4.80 -188.18 -0.90 -26.51 16 12 H 0.42 16.63 7.04 -92.71 -0.65 15.98 16 13 C 0.33 16.70 6.21 38.88 0.24 16.94 16 14 C -0.51 -24.87 9.01 23.26 0.21 -24.66 16 15 H 0.09 4.55 7.86 -2.91 -0.02 4.53 16 16 C 0.05 2.12 5.25 85.39 0.45 2.57 16 17 N -0.84 -36.53 11.48 21.89 0.25 -36.28 16 18 Si 1.00 33.49 29.57 68.60 2.03 35.52 16 19 H -0.25 -7.98 7.11 99.48 0.71 -7.28 16 20 H -0.27 -8.67 7.11 99.48 0.71 -7.97 16 21 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 22 C -0.39 -21.29 9.83 23.41 0.23 -21.06 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.03 1.27 5.26 -2.39 -0.01 1.26 16 36 H 0.14 5.22 5.92 -2.91 -0.02 5.21 16 37 H 0.19 4.85 8.06 -2.91 -0.02 4.82 16 38 H 0.30 11.75 8.29 -92.70 -0.77 10.98 16 39 H 0.09 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -60.27 321.66 2.68 -57.59 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: 0.37 Total: 39.48 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 4.49 Total: -29.25 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -4.21 Total: -103.34 kcal Atomic # 14 Polarization: 33.49 SS G_CDS: 2.03 Total: 35.52 kcal Total: -60.27 2.68 -57.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381499752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.515 kcal (2) G-P(sol) polarization free energy of solvation -60.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds