Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 H 1.09004 * 109.47420 * 304.99556 * 3 2 1 5 5 C 1.53002 * 109.47607 * 64.99965 * 3 2 1 6 6 C 1.53005 * 109.47088 * 185.00135 * 3 2 1 7 7 H 1.09005 * 109.46893 * 299.99588 * 6 3 2 8 8 C 1.52998 * 109.47527 * 59.99317 * 6 3 2 9 9 N 1.46497 * 109.47165 * 180.02562 * 6 3 2 10 10 C 1.32208 * 120.00502 * 127.07252 * 9 6 3 11 11 C 1.46914 * 120.83015 * 6.14474 * 10 9 6 12 12 C 1.34385 * 119.36944 * 179.97438 * 11 10 9 13 13 N 1.36428 * 121.21867 * 359.97438 * 12 11 10 14 14 H 0.96995 * 119.08979 * 180.02562 * 13 12 11 15 15 C 1.37768 * 121.82262 * 0.02562 * 13 12 11 16 16 C 1.40168 * 119.74406 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00482 * 201.95260 * 16 15 13 18 18 C 1.40356 * 120.00069 * 21.96386 * 16 15 13 19 19 N 1.30582 * 120.00076 * 17.98900 * 18 16 15 20 20 Si 1.86801 * 119.99970 * 197.98668 * 18 16 15 21 21 H 1.48504 * 109.46853 * 60.00024 * 20 18 16 22 22 H 1.48499 * 109.46823 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47511 * 300.00073 * 20 18 16 24 24 C 1.39076 * 120.50838 * 359.69894 * 15 13 12 25 25 H 1.08999 * 109.46939 * 60.00098 * 1 2 3 26 26 H 1.09002 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47382 * 300.00407 * 1 2 3 28 28 H 1.09003 * 109.46597 * 119.99519 * 2 1 3 29 29 H 1.09000 * 109.47382 * 239.99593 * 2 1 3 30 30 H 1.08995 * 109.47206 * 59.99392 * 5 3 2 31 31 H 1.09002 * 109.47345 * 179.97438 * 5 3 2 32 32 H 1.08999 * 109.46532 * 299.99881 * 5 3 2 33 33 H 1.09000 * 109.46723 * 300.00560 * 8 6 3 34 34 H 1.09005 * 109.46813 * 60.00222 * 8 6 3 35 35 H 1.08999 * 109.47024 * 180.02562 * 8 6 3 36 36 H 1.07999 * 120.31913 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.39004 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00438 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.62681 * 180.28201 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 1 3.9995 0.9053 0.7161 8 6 3.9697 0.7602 -1.4330 9 7 4.0532 2.8255 -0.1251 10 6 4.9969 3.1927 0.7248 11 6 5.6630 2.2041 1.5835 12 6 6.6188 2.6096 2.4367 13 7 6.9821 3.9220 2.5196 14 1 7.6760 4.1806 3.1460 15 6 6.3905 4.8903 1.7383 16 6 6.7972 6.2262 1.8597 17 1 6.1390 7.0220 1.5438 18 6 8.0601 6.5297 2.3915 19 7 8.9842 5.6086 2.4462 20 14 8.4192 8.2514 3.0212 21 1 7.4777 8.5826 4.1209 22 1 9.8134 8.3120 3.5287 23 1 8.2516 9.2280 1.9152 24 6 5.3969 4.5517 0.8260 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 2.0698 1.5876 2.1491 31 1 1.9990 3.1542 1.3075 32 1 0.5489 2.1253 1.3968 33 1 3.6063 -0.2675 -1.4329 34 1 3.5351 1.2992 -2.2749 35 1 5.0560 0.7611 -1.5223 36 1 5.3878 1.1611 1.5290 37 1 7.1090 1.8831 3.0677 38 1 9.8571 5.8184 2.8134 39 1 4.9351 5.3085 0.2093 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381566693.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = 12.202689 kcal Electronic energy + Delta-G solvation = -17939.909884 eV Core-core repulsion = 15267.447685 eV Total energy + Delta-G solvation = -2672.462199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.57843 -37.17268 -34.37135 -33.28244 -30.86183 -30.40713 -28.76042 -27.56178 -25.92140 -23.95584 -22.22934 -21.48492 -20.11859 -18.80438 -17.97323 -16.58989 -15.45228 -15.06123 -14.86545 -14.33278 -13.95313 -13.71171 -13.10895 -12.84133 -12.75906 -12.63750 -12.03392 -12.00740 -11.70978 -11.55137 -11.40545 -11.19457 -11.06245 -10.91549 -10.77780 -10.58221 -10.30420 -10.14345 -10.02573 -9.76954 -9.61759 -9.19444 -8.21141 -7.40676 -7.26280 -5.91534 -4.73431 2.63052 2.79341 2.88309 2.91428 3.20043 3.65614 4.30928 4.65989 5.17452 5.28261 5.38118 5.43720 5.62035 5.70014 5.82718 5.95136 6.03391 6.06836 6.13498 6.25345 6.30469 6.34765 6.39443 6.46982 6.62126 6.64247 6.72361 6.80321 6.83153 6.89130 6.97988 7.04341 7.13636 7.44879 7.72522 7.80158 8.02237 8.30520 8.34228 8.84701 8.97226 9.72219 9.83421 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.043379 B = 0.004597 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.311949 B = 6089.896187 C = 6277.904426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.074 4.074 4 H 0.065 0.935 5 C -0.137 4.137 6 C 0.088 3.912 7 H 0.030 0.970 8 C -0.139 4.139 9 N -0.660 5.660 10 C 0.284 3.716 11 C -0.300 4.300 12 C 0.123 3.877 13 N -0.603 5.603 14 H 0.412 0.588 15 C 0.330 3.670 16 C -0.468 4.468 17 H 0.102 0.898 18 C 0.077 3.923 19 N -0.814 5.814 20 Si 0.923 3.077 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.260 1.260 24 C -0.360 4.360 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.292 0.708 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -5.166 2.503 6.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.093 4.093 4 H 0.083 0.917 5 C -0.194 4.194 6 C -0.024 4.024 7 H 0.048 0.952 8 C -0.197 4.197 9 N -0.385 5.385 10 C 0.120 3.880 11 C -0.330 4.330 12 C -0.006 4.006 13 N -0.215 5.215 14 H 0.253 0.747 15 C 0.221 3.779 16 C -0.501 4.501 17 H 0.120 0.880 18 C -0.141 4.141 19 N -0.441 5.441 20 Si 0.746 3.254 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.389 4.389 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.126 -4.989 1.818 6.725 hybrid contribution 1.068 -0.037 1.048 1.497 sum -3.058 -5.025 2.867 6.544 Atomic orbital electron populations 1.21808 0.96605 1.00625 1.01719 1.21677 0.95165 0.97795 1.01383 1.21072 0.96267 0.93908 0.98040 0.91698 1.21723 0.99054 1.01812 0.96793 1.21258 0.93189 0.92992 0.94979 0.95171 1.21906 1.00286 0.98345 0.99157 1.73328 1.22757 1.13587 1.28855 1.20197 0.88714 0.92202 0.86850 1.22311 1.04980 0.99898 1.05843 1.21229 0.95866 0.86012 0.97516 1.42046 1.37671 1.04604 1.37129 0.74743 1.17602 0.87580 0.87266 0.85423 1.19477 1.00606 0.92315 1.37677 0.87985 1.26192 0.95061 1.00702 0.92133 1.69340 1.04509 1.36397 1.33900 0.86089 0.78063 0.80912 0.80295 1.18415 1.20144 1.18369 1.20186 1.13289 0.93798 1.11618 0.93026 0.93559 0.92718 0.92744 0.92104 0.94091 0.91731 0.94068 0.93974 0.93107 0.93940 0.86730 0.85387 0.89657 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 37.16 0.36 -1.49 16 2 C -0.12 -1.75 5.19 -26.73 -0.14 -1.89 16 3 C -0.07 -1.30 2.16 -90.62 -0.20 -1.49 16 4 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 5 C -0.14 -2.41 8.79 37.16 0.33 -2.08 16 6 C 0.09 1.76 2.37 -67.93 -0.16 1.60 16 7 H 0.03 0.62 5.34 -51.93 -0.28 0.34 16 8 C -0.14 -2.55 9.17 37.16 0.34 -2.21 16 9 N -0.66 -15.84 9.45 -50.79 -0.48 -16.32 16 10 C 0.28 7.00 6.80 -82.74 -0.56 6.43 16 11 C -0.30 -6.52 9.33 -37.43 -0.35 -6.87 16 12 C 0.12 2.47 11.15 -16.87 -0.19 2.28 16 13 N -0.60 -13.31 4.89 -10.83 -0.05 -13.36 16 14 H 0.41 8.69 6.32 -40.82 -0.26 8.43 16 15 C 0.33 8.13 6.37 -84.16 -0.54 7.59 16 16 C -0.47 -11.17 9.02 -38.06 -0.34 -11.52 16 17 H 0.10 2.38 7.91 -52.49 -0.42 1.96 16 18 C 0.08 1.69 5.17 -17.29 -0.09 1.60 16 19 N -0.81 -17.88 11.13 55.57 0.62 -17.26 16 20 Si 0.92 16.46 29.60 -169.99 -5.03 11.43 16 21 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 22 H -0.28 -4.80 7.11 56.52 0.40 -4.40 16 23 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 24 C -0.36 -9.26 9.83 -37.82 -0.37 -9.63 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.67 6.57 -51.93 -0.34 0.32 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.84 6.17 -51.93 -0.32 0.52 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.32 7.60 -51.93 -0.39 0.92 16 32 H 0.04 0.63 6.56 -51.93 -0.34 0.29 16 33 H 0.04 0.65 6.32 -51.93 -0.33 0.32 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 2.30 6.01 -52.49 -0.32 1.99 16 37 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 38 H 0.29 5.80 8.29 -40.82 -0.34 5.46 16 39 H 0.11 2.94 8.06 -52.49 -0.42 2.51 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -26.06 311.62 -8.09 -34.15 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -5.93 Total: 14.36 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.91 Total: -17.68 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.09 Total: -46.94 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -5.03 Total: 11.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.06 -8.09 -34.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381566693.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.352 kcal (2) G-P(sol) polarization free energy of solvation -26.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds