Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 H 1.09004 * 109.47420 * 304.99556 * 3 2 1 5 5 C 1.53002 * 109.47607 * 64.99965 * 3 2 1 6 6 C 1.53005 * 109.47088 * 185.00135 * 3 2 1 7 7 H 1.09005 * 109.46893 * 299.99588 * 6 3 2 8 8 C 1.52998 * 109.47527 * 59.99317 * 6 3 2 9 9 N 1.46497 * 109.47165 * 180.02562 * 6 3 2 10 10 C 1.32208 * 120.00502 * 127.07252 * 9 6 3 11 11 C 1.46914 * 120.83015 * 6.14474 * 10 9 6 12 12 C 1.34385 * 119.36944 * 179.97438 * 11 10 9 13 13 N 1.36428 * 121.21867 * 359.97438 * 12 11 10 14 14 H 0.96995 * 119.08979 * 180.02562 * 13 12 11 15 15 C 1.37768 * 121.82262 * 0.02562 * 13 12 11 16 16 C 1.40168 * 119.74406 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00482 * 201.95260 * 16 15 13 18 18 C 1.40356 * 120.00069 * 21.96386 * 16 15 13 19 19 N 1.30582 * 120.00076 * 17.98900 * 18 16 15 20 20 Si 1.86801 * 119.99970 * 197.98668 * 18 16 15 21 21 H 1.48504 * 109.46853 * 60.00024 * 20 18 16 22 22 H 1.48499 * 109.46823 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47511 * 300.00073 * 20 18 16 24 24 C 1.39076 * 120.50838 * 359.69894 * 15 13 12 25 25 H 1.08999 * 109.46939 * 60.00098 * 1 2 3 26 26 H 1.09002 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47382 * 300.00407 * 1 2 3 28 28 H 1.09003 * 109.46597 * 119.99519 * 2 1 3 29 29 H 1.09000 * 109.47382 * 239.99593 * 2 1 3 30 30 H 1.08995 * 109.47206 * 59.99392 * 5 3 2 31 31 H 1.09002 * 109.47345 * 179.97438 * 5 3 2 32 32 H 1.08999 * 109.46532 * 299.99881 * 5 3 2 33 33 H 1.09000 * 109.46723 * 300.00560 * 8 6 3 34 34 H 1.09005 * 109.46813 * 60.00222 * 8 6 3 35 35 H 1.08999 * 109.47024 * 180.02562 * 8 6 3 36 36 H 1.07999 * 120.31913 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.39004 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00438 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.62681 * 180.28201 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 1 3.9995 0.9053 0.7161 8 6 3.9697 0.7602 -1.4330 9 7 4.0532 2.8255 -0.1251 10 6 4.9969 3.1927 0.7248 11 6 5.6630 2.2041 1.5835 12 6 6.6188 2.6096 2.4367 13 7 6.9821 3.9220 2.5196 14 1 7.6760 4.1806 3.1460 15 6 6.3905 4.8903 1.7383 16 6 6.7972 6.2262 1.8597 17 1 6.1390 7.0220 1.5438 18 6 8.0601 6.5297 2.3915 19 7 8.9842 5.6086 2.4462 20 14 8.4192 8.2514 3.0212 21 1 7.4777 8.5826 4.1209 22 1 9.8134 8.3120 3.5287 23 1 8.2516 9.2280 1.9152 24 6 5.3969 4.5517 0.8260 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 2.0698 1.5876 2.1491 31 1 1.9990 3.1542 1.3075 32 1 0.5489 2.1253 1.3968 33 1 3.6063 -0.2675 -1.4329 34 1 3.5351 1.2992 -2.2749 35 1 5.0560 0.7611 -1.5223 36 1 5.3878 1.1611 1.5290 37 1 7.1090 1.8831 3.0677 38 1 9.8571 5.8184 2.8134 39 1 4.9351 5.3085 0.2093 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381566693.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = -1.859787 kcal Electronic energy + Delta-G solvation = -17940.519678 eV Core-core repulsion = 15267.447685 eV Total energy + Delta-G solvation = -2673.071993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31320 -38.65028 -36.04312 -34.91222 -32.51409 -32.02078 -30.10763 -29.26074 -27.70158 -25.26130 -23.80068 -23.17215 -21.66160 -20.31937 -19.73023 -18.36001 -17.10059 -16.64632 -16.41584 -15.75402 -15.35526 -15.29803 -14.64450 -14.45044 -14.24231 -14.06307 -13.57898 -13.47017 -13.17781 -13.03857 -12.78557 -12.65488 -12.59377 -12.41129 -12.33830 -12.13855 -11.89286 -11.51343 -11.43242 -11.31354 -11.16688 -10.85135 -9.98089 -9.15998 -8.96445 -7.69041 -6.60841 0.97883 1.12272 1.41651 1.52780 1.64515 2.16024 2.57904 2.94666 3.52886 3.85436 4.06194 4.12753 4.18471 4.37592 4.51957 4.54112 4.66044 4.70404 4.77050 4.85945 4.95234 4.96929 5.01401 5.07003 5.10570 5.13223 5.19251 5.23569 5.27218 5.37731 5.50740 5.61467 5.64290 5.69914 5.89392 6.02157 6.13383 6.52307 6.53908 7.03869 7.22749 8.04109 8.07035 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.043379 B = 0.004597 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.311949 B = 6089.896187 C = 6277.904426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.071 4.071 4 H 0.049 0.951 5 C -0.129 4.129 6 C 0.081 3.919 7 H 0.029 0.971 8 C -0.132 4.132 9 N -0.689 5.689 10 C 0.265 3.735 11 C -0.318 4.318 12 C 0.134 3.866 13 N -0.604 5.604 14 H 0.417 0.583 15 C 0.320 3.680 16 C -0.498 4.498 17 H 0.094 0.906 18 C 0.051 3.949 19 N -0.823 5.823 20 Si 0.995 3.005 21 H -0.257 1.257 22 H -0.260 1.260 23 H -0.264 1.264 24 C -0.405 4.405 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.027 0.973 36 H 0.132 0.868 37 H 0.181 0.819 38 H 0.306 0.694 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -6.334 3.867 8.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.090 4.090 4 H 0.068 0.932 5 C -0.186 4.186 6 C -0.031 4.031 7 H 0.047 0.953 8 C -0.189 4.189 9 N -0.414 5.414 10 C 0.101 3.899 11 C -0.347 4.347 12 C 0.005 3.995 13 N -0.216 5.216 14 H 0.258 0.742 15 C 0.211 3.789 16 C -0.530 4.530 17 H 0.112 0.888 18 C -0.167 4.167 19 N -0.450 5.450 20 Si 0.814 3.186 21 H -0.181 1.181 22 H -0.184 1.184 23 H -0.189 1.189 24 C -0.435 4.435 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.149 0.851 37 H 0.198 0.802 38 H 0.118 0.882 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.523 -6.192 3.175 7.799 hybrid contribution 0.928 0.338 0.602 1.156 sum -2.596 -5.853 3.776 7.434 Atomic orbital electron populations 1.21783 0.94831 1.02101 1.01753 1.21611 0.96675 0.94980 1.02038 1.21043 0.94436 0.96285 0.97209 0.93225 1.21641 1.00512 0.99436 0.97050 1.21446 0.94771 0.91112 0.95730 0.95343 1.21841 0.99313 0.99976 0.97814 1.73226 1.22736 1.16445 1.29017 1.20333 0.89312 0.92407 0.87851 1.22372 1.05909 1.00032 1.06415 1.21898 0.94805 0.85855 0.96903 1.42049 1.37669 1.05078 1.36783 0.74183 1.17704 0.87450 0.88337 0.85417 1.19690 1.01937 0.92107 1.39251 0.88818 1.26920 0.93902 1.04665 0.91233 1.69319 1.05092 1.38048 1.32499 0.85032 0.78565 0.75607 0.79368 1.18073 1.18372 1.18864 1.20125 1.15605 0.94277 1.13463 0.93027 0.91367 0.92710 0.92152 0.91312 0.93945 0.95542 0.91620 0.90633 0.93924 0.95392 0.85089 0.80163 0.88197 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.67 71.98 0.70 -2.53 16 2 C -0.12 -3.04 5.19 30.59 0.16 -2.88 16 3 C -0.07 -2.46 2.16 -10.79 -0.02 -2.49 16 4 H 0.05 1.86 8.14 -2.38 -0.02 1.85 16 5 C -0.13 -4.58 8.79 71.98 0.63 -3.94 16 6 C 0.08 3.27 2.37 44.99 0.11 3.38 16 7 H 0.03 1.16 5.34 -2.38 -0.01 1.15 16 8 C -0.13 -4.78 9.17 71.98 0.66 -4.12 16 9 N -0.69 -34.59 9.45 -314.60 -2.97 -37.56 16 10 C 0.27 13.66 6.80 42.30 0.29 13.95 16 11 C -0.32 -13.81 9.33 23.66 0.22 -13.59 16 12 C 0.13 5.20 11.15 83.10 0.93 6.13 16 13 N -0.60 -26.54 4.89 -188.18 -0.92 -27.46 16 14 H 0.42 17.15 6.32 -92.71 -0.59 16.56 16 15 C 0.32 16.35 6.37 38.88 0.25 16.60 16 16 C -0.50 -24.48 9.02 23.25 0.21 -24.27 16 17 H 0.09 4.60 7.91 -2.91 -0.02 4.58 16 18 C 0.05 2.18 5.17 85.39 0.44 2.62 16 19 N -0.82 -35.04 11.13 21.89 0.24 -34.79 16 20 Si 0.99 32.65 29.60 68.60 2.03 34.68 16 21 H -0.26 -8.30 7.11 99.48 0.71 -7.59 16 22 H -0.26 -7.82 7.11 99.48 0.71 -7.11 16 23 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 24 C -0.41 -22.29 9.83 23.41 0.23 -22.06 16 25 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.19 6.57 -2.39 -0.02 1.18 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.71 6.17 -2.39 -0.01 1.69 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.11 7.60 -2.39 -0.02 1.09 16 32 H 0.06 1.95 6.56 -2.39 -0.02 1.94 16 33 H 0.07 2.20 6.32 -2.39 -0.02 2.18 16 34 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.13 5.15 6.01 -2.91 -0.02 5.14 16 37 H 0.18 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.31 11.46 8.29 -92.71 -0.77 10.69 16 39 H 0.08 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -59.18 311.62 3.63 -55.55 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: 0.45 Total: 42.78 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 4.79 Total: -33.20 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -3.65 Total: -99.81 kcal Atomic # 14 Polarization: 32.65 SS G_CDS: 2.03 Total: 34.68 kcal Total: -59.18 3.63 -55.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381566693.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.695 kcal (2) G-P(sol) polarization free energy of solvation -59.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds