Wall clock time and date at job start Mon Mar 30 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47086 * 2 1 4 4 H 1.09002 * 109.46660 * 304.99510 * 3 2 1 5 5 C 1.52992 * 109.47059 * 64.99643 * 3 2 1 6 6 C 1.52999 * 109.47056 * 184.99983 * 3 2 1 7 7 H 1.08996 * 109.46975 * 59.99584 * 6 3 2 8 8 C 1.52996 * 109.46879 * 299.99855 * 6 3 2 9 9 N 1.46497 * 109.47257 * 179.97438 * 6 3 2 10 10 C 1.32205 * 120.00549 * 246.81701 * 9 6 3 11 11 C 1.46920 * 120.82872 * 5.86816 * 10 9 6 12 12 C 1.34378 * 119.36687 * 179.70390 * 11 10 9 13 13 N 1.36432 * 121.21918 * 0.60846 * 12 11 10 14 14 H 0.97002 * 119.08692 * 179.66909 * 13 12 11 15 15 C 1.37771 * 121.82023 * 359.64618 * 13 12 11 16 16 C 1.40178 * 119.74133 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99381 * 202.01528 * 16 15 13 18 18 C 1.40350 * 120.00201 * 22.01354 * 16 15 13 19 19 N 1.30585 * 120.00062 * 16.95179 * 18 16 15 20 20 Si 1.86797 * 119.99779 * 196.95062 * 18 16 15 21 21 H 1.48506 * 109.47231 * 89.99922 * 20 18 16 22 22 H 1.48501 * 109.47373 * 210.00001 * 20 18 16 23 23 H 1.48503 * 109.47574 * 330.00196 * 20 18 16 24 24 C 1.39067 * 120.51082 * 0.04352 * 15 13 12 25 25 H 1.09004 * 109.47023 * 300.00612 * 1 2 3 26 26 H 1.08997 * 109.46804 * 60.00263 * 1 2 3 27 27 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47110 * 240.00033 * 2 1 3 29 29 H 1.09006 * 109.46739 * 119.99496 * 2 1 3 30 30 H 1.09002 * 109.46626 * 180.02562 * 5 3 2 31 31 H 1.08996 * 109.47851 * 299.99837 * 5 3 2 32 32 H 1.09002 * 109.47493 * 60.00377 * 5 3 2 33 33 H 1.09002 * 109.47482 * 59.99876 * 8 6 3 34 34 H 1.09004 * 109.47138 * 180.02562 * 8 6 3 35 35 H 1.09003 * 109.47436 * 299.99622 * 8 6 3 36 36 H 1.08003 * 120.32021 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.39357 * 180.25323 * 12 11 10 38 38 H 0.97002 * 119.99912 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.62469 * 179.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3072 6 6 3.5649 1.4444 -0.1257 7 1 3.8532 0.9570 -1.0570 8 6 4.1749 0.6878 1.0559 9 7 4.0532 2.8256 -0.1263 10 6 4.6104 3.3293 -1.2143 11 6 4.6346 2.5669 -2.4699 12 6 5.2034 3.1097 -3.5596 13 7 5.7695 4.3503 -3.5181 14 1 6.1759 4.7103 -4.3220 15 6 5.7795 5.1060 -2.3663 16 6 6.3729 6.3760 -2.3729 17 1 6.7060 6.8212 -1.4469 18 6 6.5344 7.0689 -3.5827 19 7 5.8560 6.7067 -4.6381 20 14 7.7195 8.5092 -3.6831 21 1 9.0653 8.0168 -4.0727 22 1 7.2347 9.4795 -4.6974 23 1 7.8010 9.1766 -2.3590 24 6 5.2058 4.6186 -1.1970 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.9982 3.1544 1.3070 31 1 0.5489 2.1254 1.3969 32 1 2.0698 1.5876 2.1492 33 1 3.8115 -0.3399 1.0560 34 1 5.2612 0.6895 0.9666 35 1 3.8865 1.1752 1.9873 36 1 4.1947 1.5816 -2.5181 37 1 5.2178 2.5512 -4.4840 38 1 5.9679 7.1854 -5.4744 39 1 5.2130 5.2093 -0.2929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381566694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:25 Heat of formation + Delta-G solvation = 13.334039 kcal Electronic energy + Delta-G solvation = -17911.001775 eV Core-core repulsion = 15238.588635 eV Total energy + Delta-G solvation = -2672.413140 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.57957 -37.27577 -34.37222 -33.25697 -30.91004 -30.46894 -28.19933 -27.49614 -25.98071 -24.55243 -22.32998 -21.42025 -20.20896 -18.35988 -17.84324 -16.58634 -15.43204 -15.08564 -14.87578 -14.54378 -14.11970 -13.65362 -13.30477 -12.93522 -12.73876 -12.28757 -12.02510 -11.76617 -11.72288 -11.58259 -11.38705 -11.29483 -11.12096 -10.90360 -10.73377 -10.41299 -10.32584 -10.16349 -10.11543 -9.73274 -9.66039 -9.14605 -8.21286 -7.39722 -7.26290 -5.91959 -4.74002 2.60729 2.79147 2.88985 2.93827 3.18936 3.65731 4.30888 4.66279 5.19623 5.28000 5.36106 5.49850 5.62455 5.66897 5.87186 5.93036 6.05256 6.06761 6.16361 6.23935 6.31185 6.36591 6.43105 6.45861 6.59220 6.63824 6.72558 6.81057 6.86271 6.88369 6.99498 7.06738 7.17234 7.44706 7.72398 7.80135 8.02021 8.30651 8.34192 8.84640 8.97333 9.72350 9.83075 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041515 B = 0.004562 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.294991 B = 6136.669793 C = 6290.601372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.081 4.081 4 H 0.056 0.944 5 C -0.132 4.132 6 C 0.088 3.912 7 H 0.029 0.971 8 C -0.133 4.133 9 N -0.659 5.659 10 C 0.282 3.718 11 C -0.301 4.301 12 C 0.124 3.876 13 N -0.603 5.603 14 H 0.413 0.587 15 C 0.329 3.671 16 C -0.467 4.467 17 H 0.103 0.897 18 C 0.077 3.923 19 N -0.815 5.815 20 Si 0.924 3.076 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.256 1.256 24 C -0.359 4.359 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.292 0.708 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 -5.757 -0.348 6.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.100 4.100 4 H 0.074 0.926 5 C -0.189 4.189 6 C -0.024 4.024 7 H 0.047 0.953 8 C -0.190 4.190 9 N -0.385 5.385 10 C 0.119 3.881 11 C -0.331 4.331 12 C -0.006 4.006 13 N -0.214 5.214 14 H 0.254 0.746 15 C 0.221 3.779 16 C -0.500 4.500 17 H 0.121 0.879 18 C -0.141 4.141 19 N -0.443 5.443 20 Si 0.748 3.252 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.180 1.180 24 C -0.388 4.388 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.256 -5.594 0.373 6.044 hybrid contribution 0.510 0.144 -1.435 1.530 sum -1.747 -5.450 -1.062 5.821 Atomic orbital electron populations 1.21815 0.96661 1.00617 1.01730 1.21655 0.95113 0.97798 1.01266 1.21198 0.96561 0.94012 0.98213 0.92550 1.21704 0.98464 1.01998 0.96736 1.21251 0.92387 0.93174 0.95611 0.95301 1.21808 0.99753 0.97815 0.99668 1.73346 1.29567 1.09796 1.25753 1.20236 0.88045 0.92222 0.87640 1.22317 1.13056 1.02250 0.95524 1.21234 0.94491 0.86659 0.98200 1.42086 1.51564 1.13369 1.14409 0.74638 1.17625 0.87483 0.89357 0.83469 1.19531 1.35663 0.99658 0.95113 0.87940 1.26193 0.94015 0.99164 0.94764 1.69317 1.32439 1.39813 1.02767 0.86015 0.80013 0.79501 0.79696 1.18964 1.20031 1.18002 1.20186 1.21084 0.99236 0.98283 0.92644 0.93123 0.93552 0.92827 0.92164 0.91482 0.94594 0.93465 0.94087 0.94029 0.92663 0.86688 0.85368 0.89703 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.67 37.16 0.36 -1.54 16 2 C -0.12 -1.74 4.90 -26.73 -0.13 -1.87 16 3 C -0.08 -1.44 2.41 -90.62 -0.22 -1.65 16 4 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 5 C -0.13 -2.27 8.44 37.15 0.31 -1.96 16 6 C 0.09 1.76 2.62 -67.93 -0.18 1.58 16 7 H 0.03 0.60 5.33 -51.93 -0.28 0.32 16 8 C -0.13 -2.39 8.81 37.16 0.33 -2.07 16 9 N -0.66 -15.81 9.45 -50.80 -0.48 -16.29 16 10 C 0.28 6.99 6.80 -82.74 -0.56 6.42 16 11 C -0.30 -6.57 9.34 -37.43 -0.35 -6.92 16 12 C 0.12 2.48 11.15 -16.87 -0.19 2.29 16 13 N -0.60 -13.33 4.89 -10.83 -0.05 -13.38 16 14 H 0.41 8.73 6.28 -40.82 -0.26 8.47 16 15 C 0.33 8.13 6.37 -84.16 -0.54 7.59 16 16 C -0.47 -11.15 9.03 -38.06 -0.34 -11.50 16 17 H 0.10 2.39 7.91 -52.48 -0.41 1.98 16 18 C 0.08 1.67 5.19 -17.29 -0.09 1.58 16 19 N -0.82 -17.91 11.07 55.57 0.62 -17.30 16 20 Si 0.92 16.49 29.59 -169.99 -5.03 11.46 16 21 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 22 H -0.28 -4.85 7.11 56.52 0.40 -4.45 16 23 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 24 C -0.36 -9.25 9.83 -37.83 -0.37 -9.62 16 25 H 0.05 0.68 6.57 -51.93 -0.34 0.34 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.84 6.71 -51.93 -0.35 0.49 16 30 H 0.07 1.33 7.61 -51.93 -0.39 0.94 16 31 H 0.04 0.54 6.56 -51.93 -0.34 0.20 16 32 H 0.05 0.77 6.43 -51.93 -0.33 0.44 16 33 H 0.04 0.63 6.54 -51.93 -0.34 0.29 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.00 6.43 -51.93 -0.33 0.66 16 36 H 0.12 2.31 6.00 -52.48 -0.31 2.00 16 37 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 38 H 0.29 5.77 8.29 -40.82 -0.34 5.43 16 39 H 0.11 2.94 8.06 -52.49 -0.42 2.52 16 LS Contribution 308.37 15.07 4.65 4.65 Total: -1.00 -26.05 308.37 -8.06 -34.11 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.79 Total: 14.42 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -1.97 Total: -17.66 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.08 Total: -46.97 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.05 -8.06 -34.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381566694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.442 kcal (2) G-P(sol) polarization free energy of solvation -26.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds