Wall clock time and date at job start Mon Mar 30 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47086 * 2 1 4 4 H 1.09002 * 109.46660 * 304.99510 * 3 2 1 5 5 C 1.52992 * 109.47059 * 64.99643 * 3 2 1 6 6 C 1.52999 * 109.47056 * 184.99983 * 3 2 1 7 7 H 1.08996 * 109.46975 * 59.99584 * 6 3 2 8 8 C 1.52996 * 109.46879 * 299.99855 * 6 3 2 9 9 N 1.46497 * 109.47257 * 179.97438 * 6 3 2 10 10 C 1.32205 * 120.00549 * 246.81701 * 9 6 3 11 11 C 1.46920 * 120.82872 * 5.86816 * 10 9 6 12 12 C 1.34378 * 119.36687 * 179.70390 * 11 10 9 13 13 N 1.36432 * 121.21918 * 0.60846 * 12 11 10 14 14 H 0.97002 * 119.08692 * 179.66909 * 13 12 11 15 15 C 1.37771 * 121.82023 * 359.64618 * 13 12 11 16 16 C 1.40178 * 119.74133 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99381 * 202.01528 * 16 15 13 18 18 C 1.40350 * 120.00201 * 22.01354 * 16 15 13 19 19 N 1.30585 * 120.00062 * 16.95179 * 18 16 15 20 20 Si 1.86797 * 119.99779 * 196.95062 * 18 16 15 21 21 H 1.48506 * 109.47231 * 89.99922 * 20 18 16 22 22 H 1.48501 * 109.47373 * 210.00001 * 20 18 16 23 23 H 1.48503 * 109.47574 * 330.00196 * 20 18 16 24 24 C 1.39067 * 120.51082 * 0.04352 * 15 13 12 25 25 H 1.09004 * 109.47023 * 300.00612 * 1 2 3 26 26 H 1.08997 * 109.46804 * 60.00263 * 1 2 3 27 27 H 1.08993 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47110 * 240.00033 * 2 1 3 29 29 H 1.09006 * 109.46739 * 119.99496 * 2 1 3 30 30 H 1.09002 * 109.46626 * 180.02562 * 5 3 2 31 31 H 1.08996 * 109.47851 * 299.99837 * 5 3 2 32 32 H 1.09002 * 109.47493 * 60.00377 * 5 3 2 33 33 H 1.09002 * 109.47482 * 59.99876 * 8 6 3 34 34 H 1.09004 * 109.47138 * 180.02562 * 8 6 3 35 35 H 1.09003 * 109.47436 * 299.99622 * 8 6 3 36 36 H 1.08003 * 120.32021 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.39357 * 180.25323 * 12 11 10 38 38 H 0.97002 * 119.99912 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.62469 * 179.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3072 6 6 3.5649 1.4444 -0.1257 7 1 3.8532 0.9570 -1.0570 8 6 4.1749 0.6878 1.0559 9 7 4.0532 2.8256 -0.1263 10 6 4.6104 3.3293 -1.2143 11 6 4.6346 2.5669 -2.4699 12 6 5.2034 3.1097 -3.5596 13 7 5.7695 4.3503 -3.5181 14 1 6.1759 4.7103 -4.3220 15 6 5.7795 5.1060 -2.3663 16 6 6.3729 6.3760 -2.3729 17 1 6.7060 6.8212 -1.4469 18 6 6.5344 7.0689 -3.5827 19 7 5.8560 6.7067 -4.6381 20 14 7.7195 8.5092 -3.6831 21 1 9.0653 8.0168 -4.0727 22 1 7.2347 9.4795 -4.6974 23 1 7.8010 9.1766 -2.3590 24 6 5.2058 4.6186 -1.1970 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.9982 3.1544 1.3070 31 1 0.5489 2.1254 1.3969 32 1 2.0698 1.5876 2.1492 33 1 3.8115 -0.3399 1.0560 34 1 5.2612 0.6895 0.9666 35 1 3.8865 1.1752 1.9873 36 1 4.1947 1.5816 -2.5181 37 1 5.2178 2.5512 -4.4840 38 1 5.9679 7.1854 -5.4744 39 1 5.2130 5.2093 -0.2929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381566694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:24 Heat of formation + Delta-G solvation = -0.801605 kcal Electronic energy + Delta-G solvation = -17911.614742 eV Core-core repulsion = 15238.588635 eV Total energy + Delta-G solvation = -2673.026107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.31739 -38.75549 -36.05865 -34.89839 -32.51182 -32.08946 -29.61982 -29.15725 -27.75742 -25.89980 -23.84086 -23.12723 -21.77691 -19.94997 -19.52303 -18.35889 -17.05494 -16.64852 -16.52332 -15.90001 -15.61418 -15.27970 -14.60149 -14.53717 -14.39036 -13.72825 -13.51868 -13.27642 -13.11601 -13.03411 -12.78644 -12.75740 -12.64112 -12.48046 -12.33120 -11.92967 -11.79328 -11.76824 -11.42559 -11.33136 -11.15565 -10.79153 -9.98659 -9.15243 -8.96691 -7.69805 -6.61531 0.96372 1.11388 1.41760 1.55153 1.62544 2.16177 2.57277 2.94498 3.51679 3.92458 4.00980 4.13491 4.18994 4.34379 4.52868 4.57973 4.65422 4.72753 4.79304 4.83124 4.96024 4.97008 5.04822 5.08921 5.10636 5.14030 5.20013 5.22386 5.28236 5.38970 5.49806 5.61467 5.68486 5.71630 5.89075 6.01767 6.12826 6.52306 6.53296 7.03327 7.22633 8.04013 8.05965 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041515 B = 0.004562 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.294991 B = 6136.669793 C = 6290.601372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.077 4.077 4 H 0.031 0.969 5 C -0.126 4.126 6 C 0.080 3.920 7 H 0.025 0.975 8 C -0.125 4.125 9 N -0.686 5.686 10 C 0.260 3.740 11 C -0.319 4.319 12 C 0.135 3.865 13 N -0.603 5.603 14 H 0.418 0.582 15 C 0.319 3.681 16 C -0.496 4.496 17 H 0.094 0.906 18 C 0.050 3.950 19 N -0.824 5.824 20 Si 0.996 3.004 21 H -0.254 1.254 22 H -0.264 1.264 23 H -0.264 1.264 24 C -0.404 4.404 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.050 0.950 36 H 0.131 0.869 37 H 0.182 0.818 38 H 0.306 0.694 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 -6.663 -1.817 7.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.096 4.096 4 H 0.050 0.950 5 C -0.183 4.183 6 C -0.031 4.031 7 H 0.043 0.957 8 C -0.183 4.183 9 N -0.411 5.411 10 C 0.096 3.904 11 C -0.349 4.349 12 C 0.006 3.994 13 N -0.216 5.216 14 H 0.259 0.741 15 C 0.210 3.790 16 C -0.528 4.528 17 H 0.112 0.888 18 C -0.168 4.168 19 N -0.452 5.452 20 Si 0.816 3.184 21 H -0.178 1.178 22 H -0.188 1.188 23 H -0.188 1.188 24 C -0.433 4.433 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.149 0.851 37 H 0.199 0.801 38 H 0.118 0.882 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.351 -6.530 -1.102 7.027 hybrid contribution 0.503 0.464 -1.009 1.219 sum -1.848 -6.066 -2.111 6.683 Atomic orbital electron populations 1.21790 0.95013 1.02101 1.01631 1.21592 0.96520 0.94990 1.02040 1.21136 0.94760 0.96348 0.97354 0.95046 1.21632 0.99849 0.99852 0.96943 1.21442 0.94082 0.91316 0.96306 0.95697 1.21747 0.98800 0.99283 0.98423 1.73247 1.29266 1.12215 1.26410 1.20407 0.88380 0.92324 0.89293 1.22378 1.14617 1.02941 0.94946 1.21899 0.92123 0.85734 0.99641 1.42089 1.51873 1.13934 1.13658 0.74086 1.17733 0.87155 0.90080 0.84021 1.19728 1.36805 1.00159 0.96135 0.88819 1.26927 0.94850 1.01394 0.93594 1.69294 1.32014 1.40484 1.03360 0.84957 0.77965 0.76083 0.79396 1.17800 1.18802 1.18780 1.20121 1.24426 1.00546 0.98242 0.92404 0.93621 0.91272 0.92398 0.90977 0.95069 0.92391 0.92436 0.90839 0.95391 0.93075 0.85093 0.80148 0.88205 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.67 71.98 0.70 -2.65 16 2 C -0.11 -3.03 4.90 30.60 0.15 -2.88 16 3 C -0.08 -2.71 2.41 -10.79 -0.03 -2.74 16 4 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.13 -4.32 8.44 71.98 0.61 -3.72 16 6 C 0.08 3.24 2.62 44.99 0.12 3.36 16 7 H 0.03 1.03 5.33 -2.39 -0.01 1.02 16 8 C -0.12 -4.44 8.81 71.98 0.63 -3.80 16 9 N -0.69 -34.46 9.45 -314.62 -2.97 -37.43 16 10 C 0.26 13.50 6.80 42.30 0.29 13.79 16 11 C -0.32 -13.99 9.34 23.66 0.22 -13.77 16 12 C 0.14 5.26 11.15 83.09 0.93 6.19 16 13 N -0.60 -26.61 4.89 -188.18 -0.92 -27.53 16 14 H 0.42 17.25 6.28 -92.71 -0.58 16.66 16 15 C 0.32 16.35 6.37 38.88 0.25 16.59 16 16 C -0.50 -24.42 9.03 23.26 0.21 -24.21 16 17 H 0.09 4.62 7.91 -2.91 -0.02 4.60 16 18 C 0.05 2.15 5.19 85.39 0.44 2.59 16 19 N -0.82 -35.13 11.07 21.89 0.24 -34.88 16 20 Si 1.00 32.71 29.59 68.60 2.03 34.74 16 21 H -0.25 -7.91 7.11 99.48 0.71 -7.21 16 22 H -0.26 -8.17 7.11 99.48 0.71 -7.46 16 23 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 24 C -0.40 -22.26 9.83 23.41 0.23 -22.03 16 25 H 0.06 1.27 6.57 -2.38 -0.02 1.26 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.77 6.71 -2.38 -0.02 1.75 16 30 H 0.03 1.27 7.61 -2.39 -0.02 1.25 16 31 H 0.06 1.70 6.56 -2.39 -0.02 1.69 16 32 H 0.06 1.83 6.43 -2.39 -0.02 1.82 16 33 H 0.07 2.10 6.54 -2.39 -0.02 2.08 16 34 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 1.83 6.43 -2.39 -0.02 1.81 16 36 H 0.13 5.20 6.00 -2.91 -0.02 5.18 16 37 H 0.18 5.03 8.06 -2.91 -0.02 5.01 16 38 H 0.31 11.43 8.29 -92.71 -0.77 10.66 16 39 H 0.08 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -59.22 308.37 3.58 -55.64 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: 0.46 Total: 42.74 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 4.75 Total: -33.27 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -3.65 Total: -99.85 kcal Atomic # 14 Polarization: 32.71 SS G_CDS: 2.03 Total: 34.74 kcal Total: -59.22 3.58 -55.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381566694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.835 kcal (2) G-P(sol) polarization free energy of solvation -59.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds