Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47156 * 2 1 4 4 H 1.09002 * 109.47497 * 55.00215 * 3 2 1 5 5 C 1.52998 * 109.47215 * 294.99738 * 3 2 1 6 6 C 1.53002 * 109.47137 * 174.99846 * 3 2 1 7 7 H 1.08998 * 109.47256 * 304.99825 * 6 3 2 8 8 C 1.53004 * 109.46971 * 64.99837 * 6 3 2 9 9 N 1.46501 * 109.47379 * 184.99630 * 6 3 2 10 10 C 1.32207 * 119.99949 * 126.76385 * 9 6 3 11 11 C 1.46917 * 120.83434 * 6.21989 * 10 9 6 12 12 C 1.34382 * 119.36794 * 179.97438 * 11 10 9 13 13 N 1.36425 * 121.22316 * 0.02562 * 12 11 10 14 14 H 0.96992 * 119.09349 * 180.02562 * 13 12 11 15 15 C 1.37776 * 121.82027 * 0.02562 * 13 12 11 16 16 C 1.40172 * 119.74099 * 180.02562 * 15 13 12 17 17 H 1.08005 * 119.99228 * 202.82558 * 16 15 13 18 18 C 1.40351 * 120.00485 * 22.81796 * 16 15 13 19 19 N 1.30583 * 119.99807 * 17.13714 * 18 16 15 20 20 Si 1.86794 * 120.00130 * 197.13081 * 18 16 15 21 21 H 1.48502 * 109.47237 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47005 * 120.00611 * 20 18 16 23 23 H 1.48495 * 109.47360 * 240.00276 * 20 18 16 24 24 C 1.39076 * 120.50898 * 359.69404 * 15 13 12 25 25 H 1.09000 * 109.46685 * 60.00187 * 1 2 3 26 26 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46998 * 300.00051 * 1 2 3 28 28 H 1.08997 * 109.47247 * 239.99458 * 2 1 3 29 29 H 1.09009 * 109.46755 * 119.99977 * 2 1 3 30 30 H 1.09005 * 109.47118 * 60.00211 * 5 3 2 31 31 H 1.09002 * 109.47607 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47278 * 300.00611 * 5 3 2 33 33 H 1.09000 * 109.47143 * 179.97438 * 8 6 3 34 34 H 1.09002 * 109.47259 * 300.00048 * 8 6 3 35 35 H 1.09008 * 109.46971 * 59.99903 * 8 6 3 36 36 H 1.07997 * 120.31192 * 0.02562 * 11 10 9 37 37 H 1.07994 * 119.38522 * 179.97438 * 12 11 10 38 38 H 0.96999 * 120.00336 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.62358 * 180.28230 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 3.5649 1.4442 0.1258 7 1 3.8571 0.8800 1.0114 8 6 4.1798 0.7974 -1.1170 9 7 4.0434 2.8237 0.2458 10 6 4.8293 3.1655 1.2524 11 6 5.3442 2.1523 2.1834 12 6 6.1415 2.5325 3.1962 13 7 6.4809 3.8416 3.3760 14 1 7.0586 4.0815 4.1171 15 6 6.0256 4.8324 2.5337 16 6 6.4021 6.1637 2.7587 17 1 5.7958 6.9691 2.3712 18 6 7.5668 6.4500 3.4876 19 7 8.4684 5.5229 3.6683 20 14 7.8273 8.1574 4.1991 21 1 6.6671 9.0187 3.8565 22 1 7.9551 8.0641 5.6758 23 1 9.0665 8.7466 3.6314 24 6 5.2009 4.5208 1.4581 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 0.5490 2.1252 -1.3970 31 1 1.9990 3.1540 -1.3076 32 1 2.0699 1.5874 -2.1492 33 1 5.2662 0.7991 -1.0276 34 1 3.8239 -0.2289 -1.2063 35 1 3.8876 1.3617 -2.0027 36 1 5.0852 1.1118 2.0545 37 1 6.5198 1.7881 3.8810 38 1 9.2736 5.7208 4.1717 39 1 4.8466 5.2954 0.7941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381566696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = 13.164676 kcal Electronic energy + Delta-G solvation = -17867.952681 eV Core-core repulsion = 15195.532198 eV Total energy + Delta-G solvation = -2672.420484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.57594 -37.26602 -34.39116 -33.28461 -30.92770 -30.46545 -28.17513 -27.46805 -25.95027 -24.63795 -22.30661 -21.46343 -20.18570 -18.34378 -17.86605 -16.59050 -15.43929 -15.08826 -14.89143 -14.58703 -14.00404 -13.60855 -13.31634 -12.94172 -12.75592 -12.32084 -12.11866 -11.79526 -11.69798 -11.57270 -11.48135 -11.28833 -11.12830 -10.89776 -10.71767 -10.40582 -10.30033 -10.15548 -10.09419 -9.73839 -9.60566 -9.20430 -8.20679 -7.40045 -7.25762 -5.91872 -4.73791 2.59788 2.78724 2.89311 2.96294 3.18135 3.66335 4.30569 4.65939 5.18655 5.27734 5.36285 5.47631 5.61343 5.69506 5.86226 5.91588 6.03260 6.06156 6.15393 6.23189 6.31163 6.36338 6.42396 6.46433 6.58030 6.62041 6.72394 6.80728 6.84764 6.87989 6.98516 7.05501 7.17988 7.44714 7.72858 7.80285 8.01865 8.30991 8.33726 8.84303 8.96765 9.72912 9.82752 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041904 B = 0.004505 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.033425 B = 6214.398609 C = 6430.000918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.074 4.074 4 H 0.058 0.942 5 C -0.134 4.134 6 C 0.088 3.912 7 H 0.029 0.971 8 C -0.140 4.140 9 N -0.659 5.659 10 C 0.282 3.718 11 C -0.301 4.301 12 C 0.124 3.876 13 N -0.603 5.603 14 H 0.412 0.588 15 C 0.330 3.670 16 C -0.467 4.467 17 H 0.103 0.897 18 C 0.077 3.923 19 N -0.814 5.814 20 Si 0.922 3.078 21 H -0.255 1.255 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.358 4.358 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.291 0.709 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 -5.196 1.041 6.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.093 4.093 4 H 0.077 0.923 5 C -0.191 4.191 6 C -0.024 4.024 7 H 0.047 0.953 8 C -0.197 4.197 9 N -0.385 5.385 10 C 0.118 3.882 11 C -0.331 4.331 12 C -0.006 4.006 13 N -0.214 5.214 14 H 0.253 0.747 15 C 0.221 3.779 16 C -0.500 4.500 17 H 0.121 0.879 18 C -0.141 4.141 19 N -0.442 5.442 20 Si 0.746 3.254 21 H -0.178 1.178 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.387 4.387 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.102 0.898 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.334 -4.996 0.298 6.620 hybrid contribution 0.900 -0.092 1.247 1.541 sum -3.434 -5.087 1.545 6.330 Atomic orbital electron populations 1.21809 0.96591 1.00635 1.01737 1.21641 0.95161 0.97783 1.01259 1.21065 0.96150 0.93874 0.98226 0.92308 1.21742 0.98577 1.01971 0.96776 1.21249 0.92807 0.93002 0.95348 0.95273 1.21936 0.99757 0.98368 0.99667 1.73331 1.26393 1.14135 1.24645 1.20238 0.88442 0.92184 0.87292 1.22313 1.09139 0.99848 1.01818 1.21229 0.95795 0.86141 0.97406 1.42047 1.46368 1.04235 1.28725 0.74744 1.17627 0.87308 0.87036 0.85937 1.19539 1.07435 0.92318 1.30737 0.87930 1.26186 0.94226 1.00554 0.93169 1.69354 1.07327 1.36076 1.31492 0.85999 0.79648 0.80822 0.78948 1.17843 1.19476 1.19574 1.20199 1.19861 0.93780 1.04859 0.92630 0.93550 0.93088 0.92274 0.92797 0.94511 0.91471 0.93510 0.94102 0.94199 0.92580 0.86689 0.85358 0.89786 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 37.16 0.36 -1.50 16 2 C -0.12 -1.73 5.03 -26.73 -0.13 -1.87 16 3 C -0.07 -1.30 2.37 -90.62 -0.21 -1.52 16 4 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 5 C -0.13 -2.24 8.35 37.16 0.31 -1.93 16 6 C 0.09 1.77 2.57 -67.93 -0.17 1.59 16 7 H 0.03 0.60 5.34 -51.93 -0.28 0.32 16 8 C -0.14 -2.55 8.78 37.16 0.33 -2.23 16 9 N -0.66 -15.84 9.67 -50.79 -0.49 -16.34 16 10 C 0.28 6.99 6.80 -82.74 -0.56 6.43 16 11 C -0.30 -6.56 9.34 -37.43 -0.35 -6.91 16 12 C 0.12 2.48 11.15 -16.87 -0.19 2.29 16 13 N -0.60 -13.31 4.88 -10.83 -0.05 -13.37 16 14 H 0.41 8.70 6.35 -40.82 -0.26 8.44 16 15 C 0.33 8.13 6.36 -84.16 -0.54 7.59 16 16 C -0.47 -11.17 9.03 -38.06 -0.34 -11.52 16 17 H 0.10 2.40 7.91 -52.48 -0.42 1.99 16 18 C 0.08 1.67 5.18 -17.29 -0.09 1.58 16 19 N -0.81 -17.93 11.13 55.57 0.62 -17.31 16 20 Si 0.92 16.48 29.59 -169.99 -5.03 11.45 16 21 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 22 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 23 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 24 C -0.36 -9.23 9.83 -37.82 -0.37 -9.60 16 25 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.82 6.81 -51.93 -0.35 0.46 16 29 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.04 0.54 6.57 -51.93 -0.34 0.20 16 31 H 0.07 1.29 7.75 -51.93 -0.40 0.89 16 32 H 0.05 0.75 6.35 -51.93 -0.33 0.42 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.62 6.68 -51.93 -0.35 0.27 16 35 H 0.06 1.03 6.35 -51.92 -0.33 0.70 16 36 H 0.12 2.31 6.01 -52.49 -0.32 2.00 16 37 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 38 H 0.29 5.75 8.29 -40.82 -0.34 5.41 16 39 H 0.11 2.95 8.06 -52.49 -0.42 2.52 16 LS Contribution 308.83 15.07 4.65 4.65 Total: -1.00 -26.13 308.83 -8.07 -34.21 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -5.80 Total: 14.29 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -1.97 Total: -17.59 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.07 Total: -47.01 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.03 Total: 11.45 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.13 -8.07 -34.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381566696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.372 kcal (2) G-P(sol) polarization free energy of solvation -26.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds