Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47156 * 2 1 4 4 H 1.09002 * 109.47497 * 55.00215 * 3 2 1 5 5 C 1.52998 * 109.47215 * 294.99738 * 3 2 1 6 6 C 1.53002 * 109.47137 * 174.99846 * 3 2 1 7 7 H 1.08998 * 109.47256 * 304.99825 * 6 3 2 8 8 C 1.53004 * 109.46971 * 64.99837 * 6 3 2 9 9 N 1.46501 * 109.47379 * 184.99630 * 6 3 2 10 10 C 1.32207 * 119.99949 * 126.76385 * 9 6 3 11 11 C 1.46917 * 120.83434 * 6.21989 * 10 9 6 12 12 C 1.34382 * 119.36794 * 179.97438 * 11 10 9 13 13 N 1.36425 * 121.22316 * 0.02562 * 12 11 10 14 14 H 0.96992 * 119.09349 * 180.02562 * 13 12 11 15 15 C 1.37776 * 121.82027 * 0.02562 * 13 12 11 16 16 C 1.40172 * 119.74099 * 180.02562 * 15 13 12 17 17 H 1.08005 * 119.99228 * 202.82558 * 16 15 13 18 18 C 1.40351 * 120.00485 * 22.81796 * 16 15 13 19 19 N 1.30583 * 119.99807 * 17.13714 * 18 16 15 20 20 Si 1.86794 * 120.00130 * 197.13081 * 18 16 15 21 21 H 1.48502 * 109.47237 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47005 * 120.00611 * 20 18 16 23 23 H 1.48495 * 109.47360 * 240.00276 * 20 18 16 24 24 C 1.39076 * 120.50898 * 359.69404 * 15 13 12 25 25 H 1.09000 * 109.46685 * 60.00187 * 1 2 3 26 26 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46998 * 300.00051 * 1 2 3 28 28 H 1.08997 * 109.47247 * 239.99458 * 2 1 3 29 29 H 1.09009 * 109.46755 * 119.99977 * 2 1 3 30 30 H 1.09005 * 109.47118 * 60.00211 * 5 3 2 31 31 H 1.09002 * 109.47607 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47278 * 300.00611 * 5 3 2 33 33 H 1.09000 * 109.47143 * 179.97438 * 8 6 3 34 34 H 1.09002 * 109.47259 * 300.00048 * 8 6 3 35 35 H 1.09008 * 109.46971 * 59.99903 * 8 6 3 36 36 H 1.07997 * 120.31192 * 0.02562 * 11 10 9 37 37 H 1.07994 * 119.38522 * 179.97438 * 12 11 10 38 38 H 0.96999 * 120.00336 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.62358 * 180.28230 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 3.5649 1.4442 0.1258 7 1 3.8571 0.8800 1.0114 8 6 4.1798 0.7974 -1.1170 9 7 4.0434 2.8237 0.2458 10 6 4.8293 3.1655 1.2524 11 6 5.3442 2.1523 2.1834 12 6 6.1415 2.5325 3.1962 13 7 6.4809 3.8416 3.3760 14 1 7.0586 4.0815 4.1171 15 6 6.0256 4.8324 2.5337 16 6 6.4021 6.1637 2.7587 17 1 5.7958 6.9691 2.3712 18 6 7.5668 6.4500 3.4876 19 7 8.4684 5.5229 3.6683 20 14 7.8273 8.1574 4.1991 21 1 6.6671 9.0187 3.8565 22 1 7.9551 8.0641 5.6758 23 1 9.0665 8.7466 3.6314 24 6 5.2009 4.5208 1.4581 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 0.5490 2.1252 -1.3970 31 1 1.9990 3.1540 -1.3076 32 1 2.0699 1.5874 -2.1492 33 1 5.2662 0.7991 -1.0276 34 1 3.8239 -0.2289 -1.2063 35 1 3.8876 1.3617 -2.0027 36 1 5.0852 1.1118 2.0545 37 1 6.5198 1.7881 3.8810 38 1 9.2736 5.7208 4.1717 39 1 4.8466 5.2954 0.7941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381566696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = -1.115897 kcal Electronic energy + Delta-G solvation = -17868.571933 eV Core-core repulsion = 15195.532198 eV Total energy + Delta-G solvation = -2673.039736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31463 -38.73686 -36.07385 -34.92745 -32.52538 -32.08369 -29.61493 -29.10595 -27.72628 -25.97437 -23.81064 -23.16823 -21.75143 -19.91830 -19.55474 -18.36310 -17.06210 -16.66360 -16.52576 -15.91690 -15.54260 -15.19816 -14.64900 -14.46681 -14.41143 -13.76222 -13.67497 -13.26084 -13.10820 -13.02230 -12.83350 -12.74477 -12.65879 -12.45576 -12.36581 -11.88851 -11.81099 -11.66491 -11.40780 -11.32961 -11.09669 -10.87551 -9.97972 -9.15640 -8.96263 -7.69831 -6.61516 0.96018 1.11045 1.42008 1.56370 1.61557 2.16697 2.57008 2.94115 3.51378 3.91079 4.03466 4.11018 4.20775 4.36346 4.51180 4.57766 4.65388 4.73777 4.78982 4.82611 4.95640 4.98136 5.04357 5.08056 5.11448 5.14079 5.19157 5.22904 5.28655 5.37808 5.49531 5.63026 5.68864 5.72365 5.89337 6.01833 6.12733 6.52481 6.52770 7.03035 7.21970 8.04361 8.05863 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041904 B = 0.004505 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.033425 B = 6214.398609 C = 6430.000918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.071 4.071 4 H 0.033 0.967 5 C -0.127 4.127 6 C 0.081 3.919 7 H 0.026 0.974 8 C -0.131 4.131 9 N -0.687 5.687 10 C 0.260 3.740 11 C -0.319 4.319 12 C 0.136 3.864 13 N -0.603 5.603 14 H 0.417 0.583 15 C 0.320 3.680 16 C -0.497 4.497 17 H 0.093 0.907 18 C 0.050 3.950 19 N -0.824 5.824 20 Si 0.995 3.005 21 H -0.262 1.262 22 H -0.253 1.253 23 H -0.265 1.265 24 C -0.403 4.403 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.132 0.868 37 H 0.182 0.818 38 H 0.306 0.694 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 -6.375 2.218 7.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.091 4.091 4 H 0.052 0.948 5 C -0.184 4.184 6 C -0.031 4.031 7 H 0.043 0.957 8 C -0.188 4.188 9 N -0.413 5.413 10 C 0.096 3.904 11 C -0.349 4.349 12 C 0.007 3.993 13 N -0.215 5.215 14 H 0.258 0.742 15 C 0.211 3.789 16 C -0.529 4.529 17 H 0.111 0.889 18 C -0.168 4.168 19 N -0.451 5.451 20 Si 0.815 3.185 21 H -0.186 1.186 22 H -0.177 1.177 23 H -0.190 1.190 24 C -0.433 4.433 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.149 0.851 37 H 0.199 0.801 38 H 0.118 0.882 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.902 -6.212 1.469 7.481 hybrid contribution 0.820 0.287 0.872 1.231 sum -3.081 -5.924 2.341 7.076 Atomic orbital electron populations 1.21784 0.94854 1.02106 1.01726 1.21578 0.96648 0.95015 1.01918 1.21028 0.94281 0.96202 0.97545 0.94805 1.21668 1.00033 0.99925 0.96791 1.21441 0.94532 0.91097 0.96015 0.95659 1.21854 0.98650 0.99953 0.98390 1.73239 1.26177 1.17023 1.24815 1.20415 0.89027 0.92510 0.88464 1.22377 1.10340 0.99915 1.02247 1.21899 0.94119 0.86076 0.97254 1.42050 1.46428 1.04663 1.28344 0.74173 1.17728 0.87109 0.88151 0.85940 1.19731 1.08746 0.92054 1.32357 0.88860 1.26917 0.93005 1.04465 0.92378 1.69329 1.07610 1.37704 1.30462 0.84934 0.79150 0.75650 0.78783 1.18608 1.17734 1.19010 1.20135 1.22762 0.94144 1.06221 0.92248 0.91330 0.93555 0.91090 0.92591 0.92219 0.94842 0.92474 0.95638 0.90964 0.93055 0.85054 0.80099 0.88244 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.67 71.98 0.70 -2.58 16 2 C -0.11 -3.03 5.03 30.59 0.15 -2.88 16 3 C -0.07 -2.51 2.37 -10.80 -0.03 -2.53 16 4 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.13 -4.26 8.35 71.98 0.60 -3.65 16 6 C 0.08 3.27 2.57 44.99 0.12 3.39 16 7 H 0.03 1.04 5.34 -2.39 -0.01 1.03 16 8 C -0.13 -4.71 8.78 71.98 0.63 -4.08 16 9 N -0.69 -34.58 9.67 -314.59 -3.04 -37.63 16 10 C 0.26 13.50 6.80 42.30 0.29 13.79 16 11 C -0.32 -13.96 9.34 23.66 0.22 -13.74 16 12 C 0.14 5.26 11.15 83.10 0.93 6.19 16 13 N -0.60 -26.54 4.88 -188.18 -0.92 -27.46 16 14 H 0.42 17.17 6.35 -92.71 -0.59 16.58 16 15 C 0.32 16.37 6.36 38.88 0.25 16.62 16 16 C -0.50 -24.46 9.03 23.25 0.21 -24.25 16 17 H 0.09 4.61 7.91 -2.91 -0.02 4.59 16 18 C 0.05 2.15 5.18 85.39 0.44 2.59 16 19 N -0.82 -35.14 11.13 21.89 0.24 -34.89 16 20 Si 1.00 32.72 29.59 68.60 2.03 34.75 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 H -0.25 -7.68 7.11 99.48 0.71 -6.98 16 23 H -0.27 -8.52 7.11 99.48 0.71 -7.81 16 24 C -0.40 -22.23 9.83 23.41 0.23 -22.00 16 25 H 0.06 1.27 6.56 -2.39 -0.02 1.26 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.74 6.81 -2.39 -0.02 1.72 16 29 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.06 1.69 6.57 -2.38 -0.02 1.68 16 31 H 0.03 1.32 7.75 -2.39 -0.02 1.30 16 32 H 0.06 1.77 6.35 -2.39 -0.02 1.75 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 2.10 6.68 -2.39 -0.02 2.08 16 35 H 0.05 1.87 6.35 -2.38 -0.02 1.85 16 36 H 0.13 5.20 6.01 -2.91 -0.02 5.18 16 37 H 0.18 5.02 8.06 -2.91 -0.02 4.99 16 38 H 0.31 11.39 8.29 -92.71 -0.77 10.62 16 39 H 0.08 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -59.41 308.83 3.50 -55.91 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: 0.45 Total: 42.47 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 4.74 Total: -33.14 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -3.72 Total: -99.98 kcal Atomic # 14 Polarization: 32.72 SS G_CDS: 2.03 Total: 34.75 kcal Total: -59.41 3.50 -55.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381566696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.791 kcal (2) G-P(sol) polarization free energy of solvation -59.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds