Wall clock time and date at job start Mon Mar 30 2020 06:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47401 * 2 1 4 4 H 1.08996 * 109.47220 * 305.50309 * 3 2 1 5 5 N 1.46901 * 109.47643 * 185.49857 * 3 2 1 6 6 C 1.46902 * 110.99673 * 86.20646 * 5 3 2 7 7 C 1.53002 * 109.46929 * 184.98662 * 6 5 3 8 8 C 1.50694 * 109.46941 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00331 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00025 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99784 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00157 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47074 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47356 * 120.00159 * 12 10 8 15 15 H 1.48505 * 109.46582 * 239.99881 * 12 10 8 16 16 C 1.50700 * 109.46871 * 65.49827 * 3 2 1 17 17 N 1.31886 * 119.61781 * 71.93998 * 16 3 2 18 18 C 1.31853 * 121.73052 * 179.97438 * 17 16 3 19 19 C 1.38228 * 120.75957 * 0.02562 * 18 17 16 20 20 C 1.38625 * 119.16265 * 359.97438 * 19 18 17 21 21 C 1.38184 * 119.61906 * 251.66608 * 16 3 2 22 22 C 1.50699 * 120.41944 * 0.02743 * 21 16 3 23 23 H 1.09000 * 109.47377 * 174.47787 * 1 2 3 24 24 H 1.09002 * 109.47209 * 54.48024 * 1 2 3 25 25 H 1.08994 * 109.47256 * 294.47303 * 1 2 3 26 26 H 1.08993 * 109.47116 * 120.00547 * 2 1 3 27 27 H 1.09005 * 109.47161 * 240.00362 * 2 1 3 28 28 H 1.00897 * 111.00264 * 210.15790 * 5 3 2 29 29 H 1.09003 * 109.47149 * 304.98112 * 6 5 3 30 30 H 1.08999 * 109.47439 * 64.98268 * 6 5 3 31 31 H 1.08993 * 109.46802 * 299.99791 * 7 6 5 32 32 H 1.09004 * 109.47150 * 59.99981 * 7 6 5 33 33 H 0.97003 * 119.99843 * 179.97438 * 11 10 8 34 34 H 1.07996 * 119.62436 * 179.97438 * 18 17 16 35 35 H 1.08002 * 120.41745 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.78907 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47042 * 84.18165 * 22 21 16 38 38 H 1.08996 * 109.47338 * 204.18755 * 22 21 16 39 39 H 1.09001 * 109.46732 * 324.18893 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5985 1.9840 -0.8366 5 7 3.5030 1.4446 -0.1327 6 6 3.9035 1.3984 -1.5453 7 6 5.4257 1.2767 -1.6401 8 6 5.8365 1.2287 -3.0892 9 1 5.0869 1.2803 -3.8650 10 6 7.1694 1.1200 -3.4247 11 7 8.0823 1.0587 -2.4801 12 14 7.6787 1.0612 -5.2210 13 1 6.4710 1.1470 -6.0809 14 1 8.5804 2.2031 -5.5175 15 1 8.3895 -0.2142 -5.4924 16 6 1.6519 2.1124 1.2929 17 7 2.2612 1.7720 2.4120 18 6 1.9551 2.3314 3.5660 19 6 0.9751 3.3031 3.6428 20 6 0.3126 3.6872 2.4872 21 6 0.6658 3.0804 1.2913 22 6 -0.0214 3.4675 0.0072 23 1 -0.3634 -1.0229 -0.0989 24 1 -0.3634 0.5971 -0.8364 25 1 -0.3633 0.4257 0.9353 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.9071 2.2441 0.3317 29 1 3.4395 0.5374 -2.0266 30 1 3.5802 2.3118 -2.0447 31 1 5.8896 2.1376 -1.1589 32 1 5.7490 0.3633 -1.1407 33 1 9.0201 0.9818 -2.7161 34 1 2.4756 2.0263 4.4618 35 1 0.7291 3.7580 4.5910 36 1 -0.4572 4.4441 2.5169 37 1 -0.8361 2.7716 -0.1929 38 1 -0.4206 4.4776 0.0988 39 1 0.6955 3.4331 -0.8132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381576944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:06 Heat of formation + Delta-G solvation = 15.915661 kcal Electronic energy + Delta-G solvation = -17873.728847 eV Core-core repulsion = 15201.427655 eV Total energy + Delta-G solvation = -2672.301192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52504 -36.80118 -33.95334 -33.46810 -32.16324 -31.42801 -29.10405 -27.38185 -25.61980 -23.60086 -23.22269 -22.07536 -20.47235 -20.02772 -16.92270 -16.50101 -16.10704 -15.32117 -14.96714 -14.52510 -14.41483 -14.28817 -13.59315 -13.26480 -13.15903 -12.85573 -12.70784 -12.56289 -12.29900 -12.12138 -11.54299 -11.32986 -11.25562 -10.94816 -10.84327 -10.51443 -10.46103 -9.87148 -9.75099 -9.41343 -9.23248 -9.06515 -8.77520 -8.30558 -7.68418 -5.94852 -3.97324 1.07006 1.27509 3.33968 3.41131 3.45042 3.77884 4.31119 4.44216 4.56007 4.73031 4.73919 4.92901 5.05492 5.26110 5.32451 5.34962 5.40982 5.42711 5.51410 5.60850 5.67119 5.74058 5.91810 5.98811 6.08750 6.12541 6.18902 6.34580 6.38621 6.46547 6.58771 6.73379 7.06047 7.56060 7.80427 7.87838 8.02586 8.13933 8.16854 8.49167 9.10575 9.66102 11.16617 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.004484 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.186571 B = 6242.332868 C = 6501.722207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.133 3.867 4 H 0.058 0.942 5 N -0.673 5.673 6 C 0.065 3.935 7 C 0.027 3.973 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.057 3.943 11 N -0.893 5.893 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.135 3.865 17 N -0.453 5.453 18 C 0.092 3.908 19 C -0.178 4.178 20 C -0.081 4.081 21 C -0.134 4.134 22 C -0.115 4.115 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.338 0.662 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.262 4.459 9.770 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C 0.023 3.977 4 H 0.075 0.925 5 N -0.304 5.304 6 C -0.063 4.063 7 C -0.011 4.011 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.003 4.003 17 N -0.160 5.160 18 C -0.066 4.066 19 C -0.198 4.198 20 C -0.107 4.107 21 C -0.137 4.137 22 C -0.172 4.172 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.171 0.829 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.349 3.121 9.851 20.193 hybrid contribution -0.467 1.621 -1.026 1.974 sum -17.816 4.742 8.825 20.440 Atomic orbital electron populations 1.21809 0.96569 1.01376 1.01055 1.21484 0.94049 0.95509 1.03512 1.20602 0.90764 0.95649 0.90692 0.92467 1.60522 1.05220 1.48509 1.16145 1.22248 1.00416 0.98359 0.85255 1.19040 0.87667 0.97834 0.96512 1.21225 0.92101 1.50285 0.92290 0.92755 1.25004 0.96760 0.95400 0.97209 1.69993 1.00778 1.50487 1.31935 0.86551 0.78545 0.77569 0.85402 1.19786 1.21084 1.20994 1.21297 0.91737 0.92751 0.94524 1.67562 1.25214 1.25310 0.97960 1.22822 0.94743 0.92992 0.95999 1.22112 0.98650 0.99905 0.99177 1.21415 0.98677 0.98629 0.91955 1.20750 0.98572 0.97859 0.96503 1.20863 1.00435 1.01575 0.94341 0.92735 0.92934 0.93480 0.90842 0.91045 0.84426 0.92228 0.96886 0.96886 0.95525 0.93091 0.82910 0.85146 0.85198 0.90728 0.91534 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.64 37.16 0.36 -1.41 16 2 C -0.11 -1.59 5.64 -26.73 -0.15 -1.74 16 3 C 0.13 2.09 2.20 -68.87 -0.15 1.93 16 4 H 0.06 0.85 5.25 -51.93 -0.27 0.58 16 5 N -0.67 -12.94 6.15 -107.95 -0.66 -13.61 16 6 C 0.07 1.41 5.39 -3.82 -0.02 1.39 16 7 C 0.03 0.72 5.27 -27.88 -0.15 0.58 16 8 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 12 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 16 C 0.14 1.97 4.46 -82.59 -0.37 1.60 16 17 N -0.45 -6.95 10.10 -9.47 -0.10 -7.05 16 18 C 0.09 1.12 11.18 -17.55 -0.20 0.92 16 19 C -0.18 -1.80 10.11 -39.44 -0.40 -2.19 16 20 C -0.08 -0.83 9.84 -39.28 -0.39 -1.22 16 21 C -0.13 -1.61 5.82 -104.48 -0.61 -2.22 16 22 C -0.12 -1.12 9.37 36.01 0.34 -0.79 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.56 7.83 -51.93 -0.41 0.15 16 25 H 0.05 0.55 7.51 -51.93 -0.39 0.16 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.12 7.38 -51.93 -0.38 0.74 16 28 H 0.34 6.63 8.37 -39.29 -0.33 6.30 16 29 H 0.06 1.28 7.36 -51.93 -0.38 0.89 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.07 0.65 7.83 -51.93 -0.41 0.24 16 38 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 39 H 0.07 0.81 6.25 -51.93 -0.32 0.48 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -32.00 320.64 -8.59 -40.59 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.24 Total: 1.93 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.14 Total: -16.89 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.02 Total: -47.38 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.00 -8.59 -40.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381576944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.507 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds