Wall clock time and date at job start Mon Mar 30 2020 06:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47401 * 2 1 4 4 H 1.08996 * 109.47220 * 305.50309 * 3 2 1 5 5 N 1.46901 * 109.47643 * 185.49857 * 3 2 1 6 6 C 1.46902 * 110.99673 * 86.20646 * 5 3 2 7 7 C 1.53002 * 109.46929 * 184.98662 * 6 5 3 8 8 C 1.50694 * 109.46941 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00331 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00025 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99784 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00157 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47074 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47356 * 120.00159 * 12 10 8 15 15 H 1.48505 * 109.46582 * 239.99881 * 12 10 8 16 16 C 1.50700 * 109.46871 * 65.49827 * 3 2 1 17 17 N 1.31886 * 119.61781 * 71.93998 * 16 3 2 18 18 C 1.31853 * 121.73052 * 179.97438 * 17 16 3 19 19 C 1.38228 * 120.75957 * 0.02562 * 18 17 16 20 20 C 1.38625 * 119.16265 * 359.97438 * 19 18 17 21 21 C 1.38184 * 119.61906 * 251.66608 * 16 3 2 22 22 C 1.50699 * 120.41944 * 0.02743 * 21 16 3 23 23 H 1.09000 * 109.47377 * 174.47787 * 1 2 3 24 24 H 1.09002 * 109.47209 * 54.48024 * 1 2 3 25 25 H 1.08994 * 109.47256 * 294.47303 * 1 2 3 26 26 H 1.08993 * 109.47116 * 120.00547 * 2 1 3 27 27 H 1.09005 * 109.47161 * 240.00362 * 2 1 3 28 28 H 1.00897 * 111.00264 * 210.15790 * 5 3 2 29 29 H 1.09003 * 109.47149 * 304.98112 * 6 5 3 30 30 H 1.08999 * 109.47439 * 64.98268 * 6 5 3 31 31 H 1.08993 * 109.46802 * 299.99791 * 7 6 5 32 32 H 1.09004 * 109.47150 * 59.99981 * 7 6 5 33 33 H 0.97003 * 119.99843 * 179.97438 * 11 10 8 34 34 H 1.07996 * 119.62436 * 179.97438 * 18 17 16 35 35 H 1.08002 * 120.41745 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.78907 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47042 * 84.18165 * 22 21 16 38 38 H 1.08996 * 109.47338 * 204.18755 * 22 21 16 39 39 H 1.09001 * 109.46732 * 324.18893 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5985 1.9840 -0.8366 5 7 3.5030 1.4446 -0.1327 6 6 3.9035 1.3984 -1.5453 7 6 5.4257 1.2767 -1.6401 8 6 5.8365 1.2287 -3.0892 9 1 5.0869 1.2803 -3.8650 10 6 7.1694 1.1200 -3.4247 11 7 8.0823 1.0587 -2.4801 12 14 7.6787 1.0612 -5.2210 13 1 6.4710 1.1470 -6.0809 14 1 8.5804 2.2031 -5.5175 15 1 8.3895 -0.2142 -5.4924 16 6 1.6519 2.1124 1.2929 17 7 2.2612 1.7720 2.4120 18 6 1.9551 2.3314 3.5660 19 6 0.9751 3.3031 3.6428 20 6 0.3126 3.6872 2.4872 21 6 0.6658 3.0804 1.2913 22 6 -0.0214 3.4675 0.0072 23 1 -0.3634 -1.0229 -0.0989 24 1 -0.3634 0.5971 -0.8364 25 1 -0.3633 0.4257 0.9353 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 3.9071 2.2441 0.3317 29 1 3.4395 0.5374 -2.0266 30 1 3.5802 2.3118 -2.0447 31 1 5.8896 2.1376 -1.1589 32 1 5.7490 0.3633 -1.1407 33 1 9.0201 0.9818 -2.7161 34 1 2.4756 2.0263 4.4618 35 1 0.7291 3.7580 4.5910 36 1 -0.4572 4.4441 2.5169 37 1 -0.8361 2.7716 -0.1929 38 1 -0.4206 4.4776 0.0988 39 1 0.6955 3.4331 -0.8132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381576944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:06 Heat of formation + Delta-G solvation = -4.900632 kcal Electronic energy + Delta-G solvation = -17874.631509 eV Core-core repulsion = 15201.427655 eV Total energy + Delta-G solvation = -2673.203854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47300 -38.14831 -35.65162 -34.56680 -33.88108 -32.36127 -30.89645 -28.32618 -27.05454 -25.33798 -24.25395 -23.04920 -22.30945 -21.17660 -18.52540 -17.90871 -17.42313 -16.53563 -16.30383 -16.06809 -15.75536 -15.43301 -14.79627 -14.70908 -14.22956 -14.08043 -13.84623 -13.60325 -13.53915 -13.34274 -13.14941 -12.85951 -12.70737 -12.36076 -12.31455 -12.16831 -11.99913 -11.47285 -11.40255 -11.25012 -10.60255 -10.57138 -10.20521 -9.70388 -9.21812 -8.19712 -6.31907 0.17467 0.42459 1.40407 1.41544 1.54916 2.40870 2.85250 3.13592 3.24506 3.35938 3.76939 3.96760 4.06582 4.16465 4.22463 4.26932 4.46010 4.50590 4.54995 4.59946 4.65008 4.73394 4.76544 4.84205 4.93765 5.07124 5.13879 5.19054 5.24472 5.26281 5.35989 5.41159 5.47065 5.66482 5.79253 5.85846 6.14616 6.29699 6.49198 6.85834 7.19382 7.37590 8.93032 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.004484 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.186571 B = 6242.332868 C = 6501.722207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.134 3.866 4 H 0.069 0.931 5 N -0.684 5.684 6 C 0.086 3.914 7 C 0.034 3.966 8 C -0.542 4.542 9 H 0.063 0.937 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.970 3.030 13 H -0.259 1.259 14 H -0.277 1.277 15 H -0.278 1.278 16 C 0.109 3.891 17 N -0.495 5.495 18 C 0.072 3.928 19 C -0.166 4.166 20 C -0.081 4.081 21 C -0.137 4.137 22 C -0.114 4.114 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.332 0.668 29 H 0.062 0.938 30 H 0.020 0.980 31 H -0.014 1.014 32 H -0.009 1.009 33 H 0.263 0.737 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.551 5.694 9.276 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.024 3.976 4 H 0.086 0.914 5 N -0.315 5.315 6 C -0.043 4.043 7 C -0.003 4.003 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.794 3.206 13 H -0.183 1.183 14 H -0.203 1.203 15 H -0.204 1.204 16 C -0.029 4.029 17 N -0.204 5.204 18 C -0.085 4.085 19 C -0.185 4.185 20 C -0.106 4.106 21 C -0.139 4.139 22 C -0.171 4.171 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.149 0.851 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.004 0.996 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.185 0.815 35 H 0.183 0.817 36 H 0.183 0.817 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.665 4.354 9.361 22.210 hybrid contribution 0.231 1.257 -0.736 1.475 sum -19.434 5.610 8.624 21.989 Atomic orbital electron populations 1.21709 0.93761 1.02453 1.01724 1.21441 0.96474 0.94784 1.01641 1.20648 0.88010 0.96459 0.92437 0.91360 1.60423 1.08292 1.48478 1.14260 1.21850 0.96617 0.98719 0.87115 1.18884 0.91260 0.94748 0.95425 1.21641 0.92819 1.50421 0.93195 0.91854 1.26028 0.96718 0.94594 1.02558 1.70141 1.01314 1.51241 1.34721 0.85328 0.78507 0.77782 0.78973 1.18283 1.20309 1.20378 1.21099 0.93634 0.94485 0.93643 1.67431 1.26724 1.27037 0.99210 1.23204 0.95908 0.93868 0.95569 1.22489 0.96912 0.98346 1.00764 1.21859 0.98990 0.98686 0.91108 1.20992 0.97781 0.96889 0.98276 1.20911 1.00261 1.03240 0.92716 0.91641 0.91413 0.93351 0.93057 0.92488 0.85053 0.91961 0.96148 0.99604 0.99103 0.92776 0.81462 0.81662 0.81749 0.89433 0.89297 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.64 71.98 0.69 -2.39 16 2 C -0.10 -3.17 5.64 30.59 0.17 -2.99 16 3 C 0.13 4.25 2.20 44.17 0.10 4.35 16 4 H 0.07 2.00 5.25 -2.39 -0.01 1.99 16 5 N -0.68 -27.46 6.15 -495.45 -3.05 -30.51 16 6 C 0.09 3.83 5.39 86.30 0.47 4.29 16 7 C 0.03 1.94 5.27 29.85 0.16 2.10 16 8 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 9 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 10 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 11 N -0.93 -58.92 13.29 21.45 0.28 -58.64 16 12 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 13 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 C 0.11 3.15 4.46 42.54 0.19 3.34 16 17 N -0.50 -15.43 10.10 -183.89 -1.86 -17.29 16 18 C 0.07 1.69 11.18 84.69 0.95 2.63 16 19 C -0.17 -2.86 10.11 22.36 0.23 -2.64 16 20 C -0.08 -1.39 9.84 22.47 0.22 -1.17 16 21 C -0.14 -3.01 5.82 -19.77 -0.12 -3.13 16 22 C -0.11 -1.94 9.37 71.24 0.67 -1.27 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 1.30 7.83 -2.39 -0.02 1.28 16 25 H 0.05 1.07 7.51 -2.39 -0.02 1.05 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.84 7.38 -2.38 -0.02 1.82 16 28 H 0.33 13.76 8.37 -89.70 -0.75 13.01 16 29 H 0.06 2.73 7.36 -2.39 -0.02 2.71 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 32 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 33 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.09 1.25 7.83 -2.39 -0.02 1.23 16 38 H 0.09 1.10 8.06 -2.39 -0.02 1.08 16 39 H 0.06 1.22 6.25 -2.39 -0.01 1.21 16 Total: -1.00 -71.60 320.64 2.10 -69.51 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.27 Total: 17.95 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 4.42 Total: -28.20 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -4.62 Total: -106.43 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.60 2.10 -69.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381576944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.608 kcal (2) G-P(sol) polarization free energy of solvation -71.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds