Wall clock time and date at job start Mon Mar 30 2020 06:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47124 * 2 1 4 4 H 1.08999 * 109.47034 * 57.02941 * 3 2 1 5 5 C 1.50701 * 109.47335 * 177.02564 * 3 2 1 6 6 H 1.08007 * 119.99739 * 119.99638 * 5 3 2 7 7 C 1.37877 * 120.00311 * 300.00608 * 5 3 2 8 8 N 1.31515 * 119.99677 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00000 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47260 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46893 * 119.99673 * 9 7 5 12 12 H 1.48496 * 109.47211 * 239.99698 * 9 7 5 13 13 N 1.46903 * 109.47224 * 297.03009 * 3 2 1 14 14 C 1.46890 * 110.99795 * 319.54559 * 13 3 2 15 15 C 1.46899 * 110.99969 * 83.50409 * 13 3 2 16 16 H 1.09009 * 109.46612 * 303.87969 * 15 13 3 17 17 C 1.52999 * 109.47459 * 63.87436 * 15 13 3 18 18 C 1.50703 * 109.47169 * 183.88304 * 15 13 3 19 19 C 1.38646 * 120.78341 * 320.01464 * 18 15 13 20 20 C 1.38212 * 119.15823 * 179.97438 * 19 18 15 21 21 N 1.31871 * 120.76492 * 0.03160 * 20 19 18 22 22 C 1.31865 * 121.72363 * 359.97438 * 21 20 19 23 23 C 1.38211 * 120.76805 * 359.97438 * 22 21 20 24 24 H 1.09006 * 109.46729 * 75.84214 * 1 2 3 25 25 H 1.08998 * 109.46964 * 195.84285 * 1 2 3 26 26 H 1.08998 * 109.47044 * 315.84473 * 1 2 3 27 27 H 1.08998 * 109.47336 * 240.00471 * 2 1 3 28 28 H 1.09001 * 109.47067 * 119.99959 * 2 1 3 29 29 H 0.96999 * 119.99355 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47252 * 183.95044 * 14 13 3 31 31 H 1.09001 * 109.47842 * 303.95366 * 14 13 3 32 32 H 1.09004 * 109.47221 * 63.95638 * 14 13 3 33 33 H 1.08997 * 109.47338 * 293.69748 * 17 15 13 34 34 H 1.09005 * 109.46555 * 53.70073 * 17 15 13 35 35 H 1.09003 * 109.47203 * 173.69398 * 17 15 13 36 36 H 1.08001 * 120.42657 * 0.02562 * 19 18 15 37 37 H 1.07995 * 119.61619 * 180.29901 * 20 19 18 38 38 H 1.08000 * 119.61663 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.41735 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6338 1.9715 0.8622 5 6 3.5452 1.4432 0.0737 6 1 4.1243 1.8970 -0.7170 7 6 4.1830 0.8644 1.1504 8 7 3.4777 0.3121 2.1133 9 14 6.0487 0.8647 1.2413 10 1 6.6027 1.5441 0.0427 11 1 6.4846 1.5859 2.4641 12 1 6.5422 -0.5351 1.2899 13 7 1.6098 2.1140 -1.2337 14 6 1.7259 1.2156 -2.3900 15 6 0.2403 2.6292 -1.1026 16 1 -0.4301 1.8137 -0.8308 17 6 0.2019 3.7049 -0.0153 18 6 -0.1999 3.2252 -2.4149 19 6 0.6775 3.9742 -3.1840 20 6 0.2383 4.5048 -4.3823 21 7 -0.9982 4.3060 -4.7952 22 6 -1.8595 3.5993 -4.0898 23 6 -1.4916 3.0370 -2.8821 24 1 -0.3633 0.2514 -0.9965 25 1 -0.3633 -0.9886 0.2805 26 1 -0.3633 0.7373 0.7159 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9265 -0.0954 2.8705 30 1 1.4682 1.7585 -3.2994 31 1 2.7496 0.8486 -2.4638 32 1 1.0460 0.3728 -2.2651 33 1 0.4114 3.2504 0.9530 34 1 0.9528 4.4653 -0.2299 35 1 -0.7859 4.1654 0.0055 36 1 1.6915 4.1403 -2.8514 37 1 0.9170 5.0853 -4.9895 38 1 -2.8639 3.4575 -4.4606 39 1 -2.2016 2.4588 -2.3092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383777890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:36 Heat of formation + Delta-G solvation = 48.599929 kcal Electronic energy + Delta-G solvation = -18880.020882 eV Core-core repulsion = 16209.136986 eV Total energy + Delta-G solvation = -2670.883896 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17184 -38.02480 -33.94845 -32.07492 -31.06925 -30.39051 -29.79837 -27.32016 -24.44539 -24.00794 -23.19224 -22.69039 -20.27533 -18.87071 -16.82370 -16.22617 -15.89755 -15.31791 -15.07771 -14.45650 -14.16255 -13.91640 -13.41565 -13.40212 -13.09216 -12.62851 -12.00736 -11.75229 -11.60150 -11.46065 -11.25274 -11.16206 -10.89541 -10.84163 -10.63929 -10.48262 -10.22241 -9.86053 -9.64887 -9.25524 -9.16709 -8.90917 -8.88058 -8.34778 -7.09879 -6.02476 -4.05186 1.35506 1.51426 3.28826 3.37281 3.41852 4.03743 4.39617 4.63144 4.78098 4.97230 5.15500 5.28525 5.37503 5.45002 5.72784 5.79962 5.89211 5.98942 6.01410 6.04517 6.07575 6.17092 6.25832 6.32819 6.36354 6.45948 6.63402 6.66997 6.75188 6.81791 6.94876 6.96765 7.20362 7.43530 7.67789 7.84764 8.15040 8.15914 8.35632 8.55653 9.01786 9.59697 11.04158 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032192 B = 0.006343 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.569885 B = 4413.435205 C = 4793.628015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.154 4.154 3 C 0.214 3.786 4 H 0.044 0.956 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.522 5.522 14 C 0.028 3.972 15 C 0.091 3.909 16 H 0.068 0.932 17 C -0.135 4.135 18 C -0.019 4.019 19 C -0.143 4.143 20 C 0.085 3.915 21 N -0.497 5.497 22 C 0.089 3.911 23 C -0.177 4.177 24 H 0.040 0.960 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.259 0.741 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 3.924 -7.098 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.193 4.193 3 C 0.108 3.892 4 H 0.062 0.938 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.247 5.247 14 C -0.120 4.120 15 C -0.017 4.017 16 H 0.086 0.914 17 C -0.193 4.193 18 C -0.027 4.027 19 C -0.163 4.163 20 C -0.071 4.071 21 N -0.206 5.206 22 C -0.068 4.068 23 C -0.197 4.197 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.162 0.838 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.053 4.603 -7.791 12.114 hybrid contribution 0.720 -1.236 1.098 1.803 sum -7.334 3.367 -6.693 10.484 Atomic orbital electron populations 1.22175 0.99826 0.99756 0.99344 1.22265 0.91344 1.02448 1.03239 1.19445 0.95345 0.88386 0.86038 0.93805 1.21157 0.90694 1.35490 1.05781 0.91961 1.24922 0.98223 0.95544 0.95691 1.69880 1.34839 1.38776 1.10042 0.86491 0.85763 0.77507 0.77944 1.19780 1.21152 1.21256 1.62436 1.17993 1.38255 1.05969 1.22351 1.01688 0.94852 0.93134 1.21092 0.93084 0.97082 0.90478 0.91428 1.21804 1.00546 0.98445 0.98509 1.20519 0.92748 0.93556 0.95882 1.22169 1.01751 0.97279 0.95145 1.22735 0.92414 0.97436 0.94470 1.67604 1.03588 1.15129 1.34320 1.22581 0.98783 0.93901 0.91540 1.22028 0.97007 1.02577 0.98103 0.94097 0.94681 0.93459 0.94038 0.88380 0.93107 0.93748 0.91192 0.96067 0.91341 0.91823 0.93515 0.83764 0.83235 0.83413 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.03 37.16 0.30 -2.59 16 2 C -0.15 -3.45 4.69 -26.73 -0.13 -3.58 16 3 C 0.21 4.98 1.76 -68.86 -0.12 4.86 16 4 H 0.04 1.11 5.76 -51.93 -0.30 0.81 16 5 C -0.49 -12.93 8.27 -34.44 -0.28 -13.21 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 8 N -0.90 -24.65 11.30 55.43 0.63 -24.02 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.52 -10.35 3.92 -229.68 -0.90 -11.25 16 14 C 0.03 0.53 7.69 60.06 0.46 0.99 16 15 C 0.09 1.55 1.93 -68.86 -0.13 1.42 16 16 H 0.07 1.16 3.67 -51.92 -0.19 0.97 16 17 C -0.14 -2.24 8.96 37.16 0.33 -1.91 16 18 C -0.02 -0.28 3.79 -104.32 -0.40 -0.68 16 19 C -0.14 -2.14 7.86 -39.44 -0.31 -2.45 16 20 C 0.09 1.18 11.18 -17.54 -0.20 0.99 16 21 N -0.50 -7.24 10.36 -13.25 -0.14 -7.38 16 22 C 0.09 1.16 11.18 -17.55 -0.20 0.97 16 23 C -0.18 -2.39 9.78 -39.44 -0.39 -2.78 16 24 H 0.04 0.71 4.98 -51.93 -0.26 0.45 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.88 7.43 -51.93 -0.39 0.49 16 27 H 0.04 0.93 6.25 -51.93 -0.32 0.61 16 28 H 0.10 2.52 6.00 -51.93 -0.31 2.21 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 30 H 0.04 0.77 5.78 -51.93 -0.30 0.47 16 31 H 0.07 1.41 7.69 -51.93 -0.40 1.01 16 32 H 0.02 0.39 5.04 -51.93 -0.26 0.13 16 33 H 0.07 1.23 6.40 -51.93 -0.33 0.90 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.14 2.24 7.80 -52.49 -0.41 1.83 16 37 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 298.41 15.07 4.50 4.50 Total: -1.00 -27.55 298.41 -7.64 -35.19 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.55 Total: 3.60 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.15 Total: -16.55 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.41 Total: -42.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.55 -7.64 -35.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383777890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.791 kcal (2) G-P(sol) polarization free energy of solvation -27.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds