Wall clock time and date at job start Mon Mar 30 2020 06:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47124 * 2 1 4 4 H 1.08999 * 109.47034 * 57.02941 * 3 2 1 5 5 C 1.50701 * 109.47335 * 177.02564 * 3 2 1 6 6 H 1.08007 * 119.99739 * 119.99638 * 5 3 2 7 7 C 1.37877 * 120.00311 * 300.00608 * 5 3 2 8 8 N 1.31515 * 119.99677 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00000 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47260 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46893 * 119.99673 * 9 7 5 12 12 H 1.48496 * 109.47211 * 239.99698 * 9 7 5 13 13 N 1.46903 * 109.47224 * 297.03009 * 3 2 1 14 14 C 1.46890 * 110.99795 * 319.54559 * 13 3 2 15 15 C 1.46899 * 110.99969 * 83.50409 * 13 3 2 16 16 H 1.09009 * 109.46612 * 303.87969 * 15 13 3 17 17 C 1.52999 * 109.47459 * 63.87436 * 15 13 3 18 18 C 1.50703 * 109.47169 * 183.88304 * 15 13 3 19 19 C 1.38646 * 120.78341 * 320.01464 * 18 15 13 20 20 C 1.38212 * 119.15823 * 179.97438 * 19 18 15 21 21 N 1.31871 * 120.76492 * 0.03160 * 20 19 18 22 22 C 1.31865 * 121.72363 * 359.97438 * 21 20 19 23 23 C 1.38211 * 120.76805 * 359.97438 * 22 21 20 24 24 H 1.09006 * 109.46729 * 75.84214 * 1 2 3 25 25 H 1.08998 * 109.46964 * 195.84285 * 1 2 3 26 26 H 1.08998 * 109.47044 * 315.84473 * 1 2 3 27 27 H 1.08998 * 109.47336 * 240.00471 * 2 1 3 28 28 H 1.09001 * 109.47067 * 119.99959 * 2 1 3 29 29 H 0.96999 * 119.99355 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47252 * 183.95044 * 14 13 3 31 31 H 1.09001 * 109.47842 * 303.95366 * 14 13 3 32 32 H 1.09004 * 109.47221 * 63.95638 * 14 13 3 33 33 H 1.08997 * 109.47338 * 293.69748 * 17 15 13 34 34 H 1.09005 * 109.46555 * 53.70073 * 17 15 13 35 35 H 1.09003 * 109.47203 * 173.69398 * 17 15 13 36 36 H 1.08001 * 120.42657 * 0.02562 * 19 18 15 37 37 H 1.07995 * 119.61619 * 180.29901 * 20 19 18 38 38 H 1.08000 * 119.61663 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.41735 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6338 1.9715 0.8622 5 6 3.5452 1.4432 0.0737 6 1 4.1243 1.8970 -0.7170 7 6 4.1830 0.8644 1.1504 8 7 3.4777 0.3121 2.1133 9 14 6.0487 0.8647 1.2413 10 1 6.6027 1.5441 0.0427 11 1 6.4846 1.5859 2.4641 12 1 6.5422 -0.5351 1.2899 13 7 1.6098 2.1140 -1.2337 14 6 1.7259 1.2156 -2.3900 15 6 0.2403 2.6292 -1.1026 16 1 -0.4301 1.8137 -0.8308 17 6 0.2019 3.7049 -0.0153 18 6 -0.1999 3.2252 -2.4149 19 6 0.6775 3.9742 -3.1840 20 6 0.2383 4.5048 -4.3823 21 7 -0.9982 4.3060 -4.7952 22 6 -1.8595 3.5993 -4.0898 23 6 -1.4916 3.0370 -2.8821 24 1 -0.3633 0.2514 -0.9965 25 1 -0.3633 -0.9886 0.2805 26 1 -0.3633 0.7373 0.7159 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9265 -0.0954 2.8705 30 1 1.4682 1.7585 -3.2994 31 1 2.7496 0.8486 -2.4638 32 1 1.0460 0.3728 -2.2651 33 1 0.4114 3.2504 0.9530 34 1 0.9528 4.4653 -0.2299 35 1 -0.7859 4.1654 0.0055 36 1 1.6915 4.1403 -2.8514 37 1 0.9170 5.0853 -4.9895 38 1 -2.8639 3.4575 -4.4606 39 1 -2.2016 2.4588 -2.3092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383777890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:35 Heat of formation + Delta-G solvation = 32.810841 kcal Electronic energy + Delta-G solvation = -18880.705548 eV Core-core repulsion = 16209.136986 eV Total energy + Delta-G solvation = -2671.568562 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34670 -39.51389 -35.53480 -33.83447 -32.27668 -31.78789 -31.13061 -29.15004 -26.07701 -25.47887 -24.31069 -24.16882 -21.72279 -20.49769 -18.50376 -17.63957 -17.27347 -16.67535 -16.40523 -16.12832 -15.59433 -15.44575 -14.76487 -14.61734 -14.40860 -14.18226 -13.56830 -13.27987 -13.14827 -12.96529 -12.84618 -12.70626 -12.56977 -12.43293 -12.23496 -12.06944 -11.93156 -11.65838 -11.38991 -10.88146 -10.38154 -10.35348 -10.27056 -9.94779 -8.69734 -8.06307 -6.15066 0.31001 0.39213 1.40916 1.44221 1.54694 2.44988 2.96451 3.21988 3.35340 3.66524 3.73685 4.07092 4.30084 4.34655 4.39669 4.44071 4.47967 4.49646 4.53089 4.71634 4.76963 4.82086 4.90060 4.95599 5.03262 5.08236 5.11319 5.18380 5.27582 5.35780 5.44261 5.54211 5.67028 5.80294 5.86646 5.89237 6.33950 6.57541 6.78680 6.98535 7.10736 7.53479 8.98583 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032192 B = 0.006343 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.569885 B = 4413.435205 C = 4793.628015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 C 0.221 3.779 4 H 0.021 0.979 5 C -0.506 4.506 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.529 5.529 14 C 0.037 3.963 15 C 0.094 3.906 16 H 0.072 0.928 17 C -0.130 4.130 18 C -0.031 4.031 19 C -0.154 4.154 20 C 0.086 3.914 21 N -0.512 5.512 22 C 0.091 3.909 23 C -0.174 4.174 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.259 0.741 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.024 0.976 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.132 0.868 37 H 0.171 0.829 38 H 0.180 0.820 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.502 4.226 -8.365 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.187 4.187 3 C 0.114 3.886 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.068 0.932 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.253 5.253 14 C -0.111 4.111 15 C -0.014 4.014 16 H 0.089 0.911 17 C -0.188 4.188 18 C -0.040 4.040 19 C -0.174 4.174 20 C -0.070 4.070 21 N -0.222 5.222 22 C -0.065 4.065 23 C -0.194 4.194 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.150 0.850 37 H 0.188 0.812 38 H 0.197 0.803 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.414 4.913 -9.070 13.965 hybrid contribution 1.097 -1.289 1.450 2.229 sum -8.317 3.624 -7.619 11.848 Atomic orbital electron populations 1.22030 0.96743 1.00682 1.00459 1.22080 0.94095 1.01285 1.01212 1.19161 0.93757 0.88868 0.86826 0.96146 1.21439 0.92563 1.35137 1.05387 0.93189 1.25579 1.01934 0.95445 0.95556 1.70000 1.36134 1.39407 1.10407 0.85610 0.81372 0.77433 0.77799 1.19579 1.20916 1.20957 1.62286 1.20406 1.37907 1.04744 1.22249 1.00503 0.94941 0.93388 1.21068 0.91274 0.97158 0.91890 0.91098 1.21748 1.01694 0.98052 0.97312 1.20398 0.93921 0.94471 0.95197 1.22107 1.01308 0.98125 0.95896 1.23026 0.92692 0.97108 0.94138 1.67689 1.03916 1.15708 1.34862 1.23114 0.99821 0.92584 0.91020 1.22240 0.96398 1.02381 0.98376 0.92296 0.93319 0.93463 0.94606 0.91727 0.93191 0.92027 0.93250 0.95773 0.93430 0.92861 0.90901 0.85030 0.81187 0.80256 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 8.03 71.98 0.58 -4.57 16 2 C -0.15 -6.68 4.69 30.59 0.14 -6.53 16 3 C 0.22 10.48 1.76 44.17 0.08 10.56 16 4 H 0.02 1.08 5.76 -2.39 -0.01 1.07 16 5 C -0.51 -27.21 8.27 25.60 0.21 -27.00 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 7 C 0.01 0.70 5.30 84.65 0.45 1.15 16 8 N -0.92 -51.66 11.30 21.45 0.24 -51.42 16 9 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.53 -20.98 3.92 -880.58 -3.46 -24.43 16 14 C 0.04 1.39 7.69 127.69 0.98 2.37 16 15 C 0.09 3.09 1.93 44.17 0.09 3.18 16 16 H 0.07 2.30 3.67 -2.38 -0.01 2.29 16 17 C -0.13 -4.25 8.96 71.98 0.65 -3.60 16 18 C -0.03 -0.90 3.79 -19.67 -0.07 -0.97 16 19 C -0.15 -4.39 7.86 22.36 0.18 -4.21 16 20 C 0.09 2.20 11.18 84.68 0.95 3.15 16 21 N -0.51 -13.45 10.36 -195.84 -2.03 -15.48 16 22 C 0.09 2.06 11.18 84.68 0.95 3.01 16 23 C -0.17 -4.12 9.78 22.36 0.22 -3.90 16 24 H 0.06 1.92 4.98 -2.38 -0.01 1.90 16 25 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 1.70 7.43 -2.39 -0.02 1.68 16 27 H 0.04 1.62 6.25 -2.39 -0.01 1.61 16 28 H 0.06 3.39 6.00 -2.39 -0.01 3.37 16 29 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.06 2.06 5.78 -2.38 -0.01 2.04 16 31 H 0.05 2.00 7.69 -2.39 -0.02 1.99 16 32 H 0.02 0.87 5.04 -2.39 -0.01 0.86 16 33 H 0.05 1.73 6.40 -2.39 -0.02 1.72 16 34 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.13 4.04 7.80 -2.91 -0.02 4.02 16 37 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -59.18 298.41 3.21 -55.97 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.04 Total: 17.16 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 5.39 Total: -27.38 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -5.24 Total: -91.32 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -59.18 3.21 -55.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383777890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.781 kcal (2) G-P(sol) polarization free energy of solvation -59.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds