Wall clock time and date at job start Mon Mar 30 2020 06:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47233 * 2 1 4 4 H 1.09002 * 109.47151 * 302.47823 * 3 2 1 5 5 C 1.50701 * 109.47204 * 182.48045 * 3 2 1 6 6 H 1.08001 * 120.00080 * 239.99735 * 5 3 2 7 7 C 1.37881 * 119.99795 * 59.99796 * 5 3 2 8 8 N 1.31510 * 120.00347 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99392 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47293 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46946 * 120.00135 * 9 7 5 12 12 H 1.48506 * 109.46814 * 239.99607 * 9 7 5 13 13 N 1.46897 * 109.47419 * 62.47589 * 3 2 1 14 14 C 1.46901 * 110.99743 * 65.14540 * 13 3 2 15 15 C 1.46901 * 111.00320 * 189.10124 * 13 3 2 16 16 H 1.08998 * 109.47107 * 301.26849 * 15 13 3 17 17 C 1.53000 * 109.46946 * 181.26624 * 15 13 3 18 18 C 1.50703 * 109.46889 * 61.26444 * 15 13 3 19 19 C 1.38656 * 120.78498 * 46.01451 * 18 15 13 20 20 C 1.38202 * 119.15695 * 179.79869 * 19 18 15 21 21 N 1.31878 * 120.76556 * 0.47908 * 20 19 18 22 22 C 1.31863 * 121.72445 * 359.74667 * 21 20 19 23 23 C 1.38206 * 120.76770 * 0.02562 * 22 21 20 24 24 H 1.09006 * 109.47266 * 183.64895 * 1 2 3 25 25 H 1.08998 * 109.47075 * 303.64698 * 1 2 3 26 26 H 1.09001 * 109.47154 * 63.64712 * 1 2 3 27 27 H 1.08996 * 109.47120 * 239.99567 * 2 1 3 28 28 H 1.08997 * 109.47343 * 119.99803 * 2 1 3 29 29 H 0.96998 * 120.00114 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47276 * 190.38889 * 14 13 3 31 31 H 1.09004 * 109.47232 * 310.39389 * 14 13 3 32 32 H 1.09003 * 109.47123 * 70.39303 * 14 13 3 33 33 H 1.08998 * 109.46624 * 179.97438 * 17 15 13 34 34 H 1.08998 * 109.47401 * 300.00045 * 17 15 13 35 35 H 1.09000 * 109.47019 * 60.00559 * 17 15 13 36 36 H 1.08000 * 120.41980 * 359.97438 * 19 18 15 37 37 H 1.08001 * 119.62004 * 180.20958 * 20 19 18 38 38 H 1.07999 * 119.61724 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.42388 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6409 1.9690 -0.8669 5 6 3.5458 1.4429 -0.0615 6 1 4.1185 1.8990 0.7324 7 6 4.1922 0.8610 -1.1314 8 7 3.4948 0.3060 -2.0984 9 14 6.0587 0.8610 -1.2071 10 1 6.6029 1.5437 -0.0060 11 1 6.5524 -0.5390 -1.2477 12 1 6.5045 1.5786 -2.4285 13 7 1.5999 2.1175 1.2282 14 6 2.2177 1.5088 2.4138 15 6 1.8830 3.5577 1.1678 16 1 2.9527 3.7121 1.0265 17 6 1.4403 4.2197 2.4742 18 6 1.1305 4.1697 0.0144 19 6 -0.2060 3.8691 -0.2004 20 6 -0.8645 4.4527 -1.2661 21 7 -0.2340 5.2785 -2.0783 22 6 1.0374 5.5834 -1.9072 23 6 1.7596 5.0420 -0.8606 24 1 -0.3634 -1.0256 0.0654 25 1 -0.3633 0.5694 0.8555 26 1 -0.3633 0.4562 -0.9209 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9496 -0.1036 -2.8509 30 1 1.7406 1.8987 3.3128 31 1 2.0904 0.4269 2.3749 32 1 3.2808 1.7490 2.4334 33 1 1.6509 5.2882 2.4296 34 1 0.3706 4.0653 2.6156 35 1 1.9847 3.7771 3.3084 36 1 -0.7264 3.1898 0.4585 37 1 -1.9065 4.2265 -1.4383 38 1 1.5202 6.2635 -2.5933 39 1 2.8008 5.2953 -0.7259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383777891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:38 Heat of formation + Delta-G solvation = 34.744192 kcal Electronic energy + Delta-G solvation = -19125.315180 eV Core-core repulsion = 16453.830455 eV Total energy + Delta-G solvation = -2671.484726 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81103 -37.55337 -33.95673 -32.04472 -31.11271 -30.67266 -28.95178 -26.79103 -25.33649 -23.34252 -22.90524 -22.44068 -20.06838 -18.90706 -16.72752 -16.00643 -15.84882 -15.15606 -14.88766 -14.46266 -13.79568 -13.66997 -13.18200 -13.05546 -12.91048 -12.76904 -12.22587 -11.64133 -11.55155 -11.38195 -11.18999 -11.05461 -10.96503 -10.80070 -10.70813 -10.43155 -9.98807 -9.69542 -9.47295 -9.22096 -8.99208 -8.82410 -8.61388 -8.35952 -7.20682 -6.01457 -4.14467 1.67443 1.82255 3.22379 3.31632 3.33442 4.32855 4.36461 4.88541 4.91928 5.16635 5.24273 5.38954 5.65373 5.70474 5.81285 5.84051 5.99655 6.15315 6.16363 6.23726 6.31055 6.34880 6.41865 6.46371 6.58328 6.61736 6.67212 6.73993 6.98433 7.09633 7.17394 7.22985 7.32842 7.58266 7.73358 7.93308 8.12251 8.25883 8.42777 8.44263 8.95045 9.52993 10.98239 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.009146 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.086781 B = 3060.773673 C = 3378.540880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.041 0.959 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.530 5.530 14 C 0.034 3.966 15 C 0.119 3.881 16 H 0.057 0.943 17 C -0.140 4.140 18 C -0.006 4.006 19 C -0.142 4.142 20 C 0.083 3.917 21 N -0.497 5.497 22 C 0.089 3.911 23 C -0.163 4.163 24 H 0.024 0.976 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.091 0.909 28 H 0.033 0.967 29 H 0.260 0.740 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 6.128 5.648 9.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.059 0.941 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.254 5.254 14 C -0.115 4.115 15 C 0.010 3.990 16 H 0.075 0.925 17 C -0.198 4.198 18 C -0.014 4.014 19 C -0.162 4.162 20 C -0.073 4.073 21 N -0.207 5.207 22 C -0.068 4.068 23 C -0.183 4.183 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.727 6.334 4.816 9.804 hybrid contribution 2.604 -0.494 0.371 2.677 sum -3.123 5.839 5.187 8.411 Atomic orbital electron populations 1.21721 0.98894 0.98469 1.00518 1.21606 0.92200 0.99203 1.01930 1.19293 0.92641 0.90933 0.86443 0.94128 1.21734 0.92685 1.37480 1.06320 0.92637 1.24889 0.97780 0.95081 0.95532 1.69881 1.34841 1.37560 1.09830 0.86674 0.86456 0.77768 0.77906 1.19980 1.20996 1.21032 1.62562 1.57762 1.00134 1.04958 1.22212 0.96996 0.99981 0.92300 1.20427 0.97197 0.90104 0.91298 0.92541 1.21889 1.01841 0.99283 0.96802 1.20196 0.93720 0.92670 0.94861 1.21963 0.95122 0.99949 0.99193 1.22621 0.99774 0.93487 0.91403 1.67561 1.10372 1.14657 1.28093 1.22529 0.90234 0.98117 0.95932 1.22004 1.00995 0.99054 0.96289 0.95650 0.93151 0.94393 0.89121 0.94833 0.92956 0.93808 0.91672 0.95508 0.93145 0.92210 0.92251 0.84587 0.83586 0.83580 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.83 37.16 0.37 -2.39 16 2 C -0.11 -2.57 5.10 -26.73 -0.14 -2.71 16 3 C 0.21 5.01 1.53 -68.87 -0.11 4.90 16 4 H 0.04 1.09 6.63 -51.93 -0.34 0.75 16 5 C -0.54 -14.03 7.15 -34.44 -0.25 -14.28 16 6 H 0.06 1.44 5.89 -52.49 -0.31 1.14 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 8 N -0.88 -24.65 11.30 55.43 0.63 -24.03 16 9 Si 0.88 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.53 -10.38 3.43 -229.68 -0.79 -11.17 16 14 C 0.03 0.62 8.15 60.07 0.49 1.11 16 15 C 0.12 2.14 2.12 -68.86 -0.15 1.99 16 16 H 0.06 1.14 6.90 -51.93 -0.36 0.78 16 17 C -0.14 -2.04 8.73 37.16 0.32 -1.71 16 18 C -0.01 -0.11 3.49 -104.31 -0.36 -0.47 16 19 C -0.14 -2.42 9.05 -39.44 -0.36 -2.78 16 20 C 0.08 1.37 11.18 -17.55 -0.20 1.18 16 21 N -0.50 -8.76 10.36 -13.25 -0.14 -8.90 16 22 C 0.09 1.48 11.18 -17.55 -0.20 1.28 16 23 C -0.16 -2.83 9.77 -39.44 -0.39 -3.22 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.94 7.57 -51.93 -0.39 0.55 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 2.39 6.01 -51.93 -0.31 2.07 16 28 H 0.03 0.76 6.22 -51.93 -0.32 0.44 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.04 0.68 6.62 -51.93 -0.34 0.34 16 31 H 0.06 1.24 5.99 -51.93 -0.31 0.93 16 32 H 0.03 0.52 6.58 -51.93 -0.34 0.18 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.06 0.82 6.48 -51.93 -0.34 0.48 16 36 H 0.14 2.21 7.97 -52.49 -0.42 1.80 16 37 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 39 H 0.13 2.05 8.04 -52.49 -0.42 1.63 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -28.10 306.40 -7.63 -35.73 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.88 Total: 3.22 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.05 Total: -15.32 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.30 Total: -44.10 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.10 -7.63 -35.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383777891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.475 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds