Wall clock time and date at job start Mon Mar 30 2020 06:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47233 * 2 1 4 4 H 1.09002 * 109.47151 * 302.47823 * 3 2 1 5 5 C 1.50701 * 109.47204 * 182.48045 * 3 2 1 6 6 H 1.08001 * 120.00080 * 239.99735 * 5 3 2 7 7 C 1.37881 * 119.99795 * 59.99796 * 5 3 2 8 8 N 1.31510 * 120.00347 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99392 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47293 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46946 * 120.00135 * 9 7 5 12 12 H 1.48506 * 109.46814 * 239.99607 * 9 7 5 13 13 N 1.46897 * 109.47419 * 62.47589 * 3 2 1 14 14 C 1.46901 * 110.99743 * 65.14540 * 13 3 2 15 15 C 1.46901 * 111.00320 * 189.10124 * 13 3 2 16 16 H 1.08998 * 109.47107 * 301.26849 * 15 13 3 17 17 C 1.53000 * 109.46946 * 181.26624 * 15 13 3 18 18 C 1.50703 * 109.46889 * 61.26444 * 15 13 3 19 19 C 1.38656 * 120.78498 * 46.01451 * 18 15 13 20 20 C 1.38202 * 119.15695 * 179.79869 * 19 18 15 21 21 N 1.31878 * 120.76556 * 0.47908 * 20 19 18 22 22 C 1.31863 * 121.72445 * 359.74667 * 21 20 19 23 23 C 1.38206 * 120.76770 * 0.02562 * 22 21 20 24 24 H 1.09006 * 109.47266 * 183.64895 * 1 2 3 25 25 H 1.08998 * 109.47075 * 303.64698 * 1 2 3 26 26 H 1.09001 * 109.47154 * 63.64712 * 1 2 3 27 27 H 1.08996 * 109.47120 * 239.99567 * 2 1 3 28 28 H 1.08997 * 109.47343 * 119.99803 * 2 1 3 29 29 H 0.96998 * 120.00114 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47276 * 190.38889 * 14 13 3 31 31 H 1.09004 * 109.47232 * 310.39389 * 14 13 3 32 32 H 1.09003 * 109.47123 * 70.39303 * 14 13 3 33 33 H 1.08998 * 109.46624 * 179.97438 * 17 15 13 34 34 H 1.08998 * 109.47401 * 300.00045 * 17 15 13 35 35 H 1.09000 * 109.47019 * 60.00559 * 17 15 13 36 36 H 1.08000 * 120.41980 * 359.97438 * 19 18 15 37 37 H 1.08001 * 119.62004 * 180.20958 * 20 19 18 38 38 H 1.07999 * 119.61724 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.42388 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6409 1.9690 -0.8669 5 6 3.5458 1.4429 -0.0615 6 1 4.1185 1.8990 0.7324 7 6 4.1922 0.8610 -1.1314 8 7 3.4948 0.3060 -2.0984 9 14 6.0587 0.8610 -1.2071 10 1 6.6029 1.5437 -0.0060 11 1 6.5524 -0.5390 -1.2477 12 1 6.5045 1.5786 -2.4285 13 7 1.5999 2.1175 1.2282 14 6 2.2177 1.5088 2.4138 15 6 1.8830 3.5577 1.1678 16 1 2.9527 3.7121 1.0265 17 6 1.4403 4.2197 2.4742 18 6 1.1305 4.1697 0.0144 19 6 -0.2060 3.8691 -0.2004 20 6 -0.8645 4.4527 -1.2661 21 7 -0.2340 5.2785 -2.0783 22 6 1.0374 5.5834 -1.9072 23 6 1.7596 5.0420 -0.8606 24 1 -0.3634 -1.0256 0.0654 25 1 -0.3633 0.5694 0.8555 26 1 -0.3633 0.4562 -0.9209 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9496 -0.1036 -2.8509 30 1 1.7406 1.8987 3.3128 31 1 2.0904 0.4269 2.3749 32 1 3.2808 1.7490 2.4334 33 1 1.6509 5.2882 2.4296 34 1 0.3706 4.0653 2.6156 35 1 1.9847 3.7771 3.3084 36 1 -0.7264 3.1898 0.4585 37 1 -1.9065 4.2265 -1.4383 38 1 1.5202 6.2635 -2.5933 39 1 2.8008 5.2953 -0.7259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383777891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:37 Heat of formation + Delta-G solvation = 19.030424 kcal Electronic energy + Delta-G solvation = -19125.996580 eV Core-core repulsion = 16453.830455 eV Total energy + Delta-G solvation = -2672.166126 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16261 -39.12862 -35.63163 -33.83845 -32.71807 -31.97296 -30.36348 -28.55177 -26.95341 -24.92481 -24.36045 -23.88815 -21.59506 -20.64321 -18.47963 -17.58635 -17.34330 -16.70017 -16.39217 -16.04376 -15.37054 -15.16111 -14.76013 -14.52427 -14.33720 -14.27783 -13.72680 -13.33403 -13.13142 -12.89197 -12.79877 -12.65499 -12.57837 -12.43958 -12.21701 -12.08274 -11.72880 -11.54015 -11.23394 -11.01640 -10.46875 -10.33273 -10.18282 -9.90972 -8.91972 -8.02385 -6.23911 0.36619 0.47530 1.32852 1.36961 1.44994 2.38701 3.00122 3.16862 3.40852 3.69176 3.82657 4.10238 4.34069 4.39354 4.51671 4.52286 4.54630 4.70150 4.80030 4.83476 4.89092 4.93271 4.96892 5.00155 5.07510 5.16374 5.24389 5.31095 5.41575 5.46227 5.53778 5.59679 5.67865 5.83955 5.93472 6.09290 6.22280 6.40077 6.68603 6.98656 7.13428 7.46888 8.92466 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.009146 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.086781 B = 3060.773673 C = 3378.540880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.226 3.774 4 H 0.006 0.994 5 C -0.545 4.545 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.939 3.061 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.522 5.522 14 C 0.036 3.964 15 C 0.119 3.881 16 H 0.030 0.970 17 C -0.131 4.131 18 C -0.022 4.022 19 C -0.147 4.147 20 C 0.081 3.919 21 N -0.514 5.514 22 C 0.084 3.916 23 C -0.180 4.180 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.028 0.972 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.259 0.741 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.011 0.989 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.144 0.856 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 6.686 6.843 10.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.119 3.881 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.246 5.246 14 C -0.112 4.112 15 C 0.010 3.990 16 H 0.048 0.952 17 C -0.188 4.188 18 C -0.030 4.030 19 C -0.167 4.167 20 C -0.075 4.075 21 N -0.224 5.224 22 C -0.072 4.072 23 C -0.200 4.200 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.162 0.838 37 H 0.192 0.808 38 H 0.189 0.811 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.340 6.902 6.031 11.145 hybrid contribution 2.785 -0.641 0.011 2.858 sum -3.555 6.261 6.042 9.399 Atomic orbital electron populations 1.21570 0.96186 0.99831 1.00645 1.21469 0.94594 0.98489 1.00156 1.18957 0.91073 0.91056 0.87058 0.97606 1.22016 0.94222 1.36442 1.05777 0.93206 1.25548 1.01393 0.95206 0.95533 1.70014 1.36119 1.38588 1.10337 0.85806 0.82214 0.77617 0.77786 1.19457 1.20857 1.21096 1.62505 1.57315 1.00968 1.03779 1.22251 0.96343 0.99634 0.92987 1.20479 0.95843 0.89215 0.93480 0.95187 1.21819 1.02403 0.99825 0.94778 1.20350 0.94385 0.93130 0.95172 1.22067 0.94827 1.00174 0.99667 1.23097 1.01021 0.92654 0.90744 1.67636 1.10811 1.15335 1.28617 1.22943 0.90150 0.98133 0.95998 1.22187 1.01463 0.99595 0.96757 0.93849 0.91676 0.95290 0.92564 0.94852 0.93208 0.90316 0.92455 0.97085 0.91768 0.91247 0.91324 0.83822 0.80792 0.81139 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.83 71.98 0.71 -4.09 16 2 C -0.11 -5.03 5.10 30.59 0.16 -4.88 16 3 C 0.23 10.68 1.53 44.17 0.07 10.75 16 4 H 0.01 0.33 6.63 -2.39 -0.02 0.31 16 5 C -0.55 -28.49 7.15 25.60 0.18 -28.31 16 6 H 0.05 2.61 5.89 -2.91 -0.02 2.60 16 7 C 0.02 1.24 5.30 84.66 0.45 1.69 16 8 N -0.91 -51.96 11.30 21.45 0.24 -51.71 16 9 Si 0.94 43.24 29.54 68.60 2.03 45.26 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.52 -19.93 3.43 -880.58 -3.02 -22.95 16 14 C 0.04 1.27 8.15 127.69 1.04 2.31 16 15 C 0.12 4.17 2.12 44.17 0.09 4.26 16 16 H 0.03 1.22 6.90 -2.39 -0.02 1.20 16 17 C -0.13 -3.48 8.73 71.98 0.63 -2.85 16 18 C -0.02 -0.77 3.49 -19.67 -0.07 -0.84 16 19 C -0.15 -4.84 9.05 22.36 0.20 -4.64 16 20 C 0.08 2.54 11.18 84.68 0.95 3.49 16 21 N -0.51 -17.53 10.36 -195.84 -2.03 -19.56 16 22 C 0.08 2.74 11.18 84.68 0.95 3.68 16 23 C -0.18 -6.19 9.77 22.36 0.22 -5.98 16 24 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.06 2.29 7.57 -2.39 -0.02 2.27 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 3.01 6.01 -2.39 -0.01 3.00 16 28 H 0.03 1.51 6.22 -2.39 -0.01 1.49 16 29 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.08 2.22 6.62 -2.39 -0.02 2.21 16 31 H 0.06 2.10 5.99 -2.39 -0.01 2.08 16 32 H 0.01 0.41 6.58 -2.39 -0.02 0.39 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 35 H 0.07 1.69 6.48 -2.39 -0.02 1.67 16 36 H 0.14 4.41 7.97 -2.91 -0.02 4.39 16 37 H 0.18 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.17 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.13 4.28 8.04 -2.91 -0.02 4.26 16 Total: -1.00 -60.25 306.40 3.81 -56.44 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.02 Total: 17.93 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 5.57 Total: -25.41 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -4.81 Total: -94.23 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -60.25 3.81 -56.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383777891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.470 kcal (2) G-P(sol) polarization free energy of solvation -60.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds