Wall clock time and date at job start Mon Mar 30 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38223 * 120.41805 * 2 1 4 4 N 1.31856 * 120.76457 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72497 * 359.97438 * 4 3 2 6 6 C 1.38186 * 120.76761 * 0.02562 * 5 4 3 7 7 C 1.38628 * 120.42163 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.78584 * 0.02562 * 7 2 1 9 9 N 1.46892 * 109.47338 * 79.99701 * 8 7 2 10 10 C 1.46903 * 110.99937 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47322 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47275 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46975 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47081 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99909 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00375 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99743 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00307 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46962 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46621 * 120.00189 * 18 16 14 21 21 H 1.48500 * 109.47419 * 240.00374 * 18 16 14 22 22 H 1.08993 * 109.46982 * 90.00050 * 1 2 3 23 23 H 1.08999 * 109.47057 * 210.00365 * 1 2 3 24 24 H 1.09002 * 109.46978 * 329.99732 * 1 2 3 25 25 H 1.08000 * 119.62014 * 0.02562 * 3 2 1 26 26 H 1.08001 * 119.62224 * 179.72558 * 5 4 3 27 27 H 1.07992 * 120.42064 * 179.97438 * 6 5 4 28 28 H 1.09010 * 109.46717 * 199.99710 * 8 7 2 29 29 H 1.08997 * 109.47010 * 319.99065 * 8 7 2 30 30 H 1.00898 * 111.00138 * 303.95148 * 9 8 7 31 31 H 1.08997 * 109.47382 * 300.00513 * 10 9 8 32 32 H 1.09003 * 109.46865 * 59.99849 * 10 9 8 33 33 H 1.09003 * 109.46818 * 300.00473 * 11 10 9 34 34 H 1.08997 * 109.46705 * 60.00293 * 11 10 9 35 35 H 1.08998 * 109.46622 * 300.00409 * 12 11 10 36 36 H 1.09003 * 109.47161 * 59.99886 * 12 11 10 37 37 H 1.09004 * 109.46972 * 299.99425 * 13 12 11 38 38 H 1.08997 * 109.47015 * 59.99953 * 13 12 11 39 39 H 0.97000 * 120.00277 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0824 0.0015 6 6 3.5948 -1.1471 0.0016 7 6 2.2090 -1.1954 0.0005 8 6 1.4831 -2.5161 0.0005 9 7 1.0370 -2.8297 -1.3634 10 6 0.3243 -4.1137 -1.4020 11 6 -0.1244 -4.4051 -2.8355 12 6 -0.8672 -5.7421 -2.8756 13 6 -1.3153 -6.0337 -4.3091 14 6 -2.0475 -7.3503 -4.3485 15 1 -2.1797 -7.9221 -3.4418 16 6 -2.5488 -7.8250 -5.5420 17 7 -2.3874 -7.1290 -6.6462 18 14 -3.4558 -9.4573 -5.5910 19 1 -3.5014 -10.0393 -4.2255 20 1 -4.8401 -9.2397 -6.0824 21 1 -2.7473 -10.3901 -6.5037 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6675 2.1276 0.0004 26 1 5.3046 0.1285 -0.0026 27 1 4.1738 -2.0587 0.0020 28 1 2.1544 -3.2996 0.3525 29 1 0.6181 -2.4553 0.6609 30 1 0.4650 -2.0870 -1.7365 31 1 0.9877 -4.9080 -1.0600 32 1 -0.5488 -4.0643 -0.7513 33 1 -0.7880 -3.6107 -3.1770 34 1 0.7485 -4.4544 -3.4864 35 1 -0.2039 -6.5366 -2.5338 36 1 -1.7402 -5.6924 -2.2246 37 1 -1.9786 -5.2392 -4.6512 38 1 -0.4422 -6.0835 -4.9596 39 1 -2.7397 -7.4630 -7.4860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385296841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:29 Heat of formation + Delta-G solvation = 4.147517 kcal Electronic energy + Delta-G solvation = -16876.054120 eV Core-core repulsion = 14203.242623 eV Total energy + Delta-G solvation = -2672.811497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56147 -37.04489 -34.79633 -33.42034 -32.54777 -31.63805 -28.68939 -27.57848 -25.88432 -23.89650 -22.86091 -21.56319 -21.39114 -20.00378 -17.06835 -16.79152 -16.18417 -15.69341 -15.29647 -15.06941 -14.50729 -14.31564 -14.07980 -13.76549 -13.50807 -13.03226 -12.75107 -12.45573 -12.32983 -12.20835 -11.70184 -11.57183 -11.42171 -11.02309 -10.59861 -10.50596 -10.44698 -9.79945 -9.67001 -9.64777 -9.26472 -9.12763 -8.99590 -8.49368 -8.33466 -5.98395 -4.00666 0.90413 1.01806 3.31263 3.38600 3.42703 3.53649 4.17620 4.24977 4.46606 4.47446 4.50922 4.66252 4.72274 5.14441 5.17127 5.22376 5.32482 5.37025 5.38592 5.43659 5.48922 5.56253 5.70588 5.85047 5.87456 6.11126 6.14838 6.19191 6.47576 6.50151 6.79519 6.89616 6.97052 7.19347 7.28559 7.70599 7.76254 7.85960 8.02626 8.45319 9.07098 9.63308 11.12996 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.052664 B = 0.002876 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.543095 B = 9735.081816 C = 9800.647902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 C 0.096 3.904 4 N -0.486 5.486 5 C 0.088 3.912 6 C -0.150 4.150 7 C -0.036 4.036 8 C 0.093 3.907 9 N -0.684 5.684 10 C 0.059 3.941 11 C -0.116 4.116 12 C -0.108 4.108 13 C 0.021 3.979 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.136 0.864 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.341 0.659 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.840 14.333 15.412 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 C -0.061 4.061 4 N -0.194 5.194 5 C -0.068 4.068 6 C -0.171 4.171 7 C -0.045 4.045 8 C -0.035 4.035 9 N -0.315 5.315 10 C -0.069 4.069 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.170 0.830 26 H 0.172 0.828 27 H 0.154 0.846 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.159 0.841 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.850 14.837 15.049 23.316 hybrid contribution -1.746 -1.480 0.221 2.300 sum 8.104 13.357 15.270 21.846 Atomic orbital electron populations 1.20808 0.90353 1.03237 1.03005 1.20830 0.97516 0.93774 1.01357 1.22624 0.89956 0.97291 0.96229 1.67648 1.08327 1.31551 1.11907 1.22726 1.00319 0.87684 0.96058 1.22056 0.94481 0.99733 1.00783 1.20137 0.93887 0.94740 0.95700 1.20907 0.98310 0.93180 0.91139 1.60564 1.46135 1.05573 1.19266 1.22121 0.95804 0.90443 0.98572 1.21643 1.00367 0.99070 0.94291 1.21589 0.98063 0.93946 1.01067 1.19096 0.96212 0.96358 0.89984 1.21325 1.35217 1.05346 0.93920 0.92723 1.25041 0.96380 0.97360 0.95795 1.69978 1.46406 1.38257 0.98897 0.86556 0.79526 0.84012 0.78022 1.19774 1.21038 1.21005 0.90466 0.91222 0.91010 0.82956 0.82827 0.84645 0.89835 0.93724 0.84116 0.91042 0.95374 0.92735 0.91578 0.93404 0.93650 0.96737 0.96593 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.08 36.01 0.33 -0.54 16 2 C -0.13 -1.26 5.90 -104.48 -0.62 -1.87 16 3 C 0.10 0.95 10.86 -17.55 -0.19 0.76 16 4 N -0.49 -5.48 10.36 -13.25 -0.14 -5.62 16 5 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 6 C -0.15 -1.44 9.78 -39.44 -0.39 -1.83 16 7 C -0.04 -0.37 5.43 -104.32 -0.57 -0.93 16 8 C 0.09 0.93 5.30 -4.98 -0.03 0.90 16 9 N -0.68 -8.21 6.49 -115.06 -0.75 -8.96 16 10 C 0.06 0.79 5.69 -3.82 -0.02 0.77 16 11 C -0.12 -1.94 5.47 -26.73 -0.15 -2.08 16 12 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 18 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 23 H 0.07 0.52 6.26 -51.93 -0.33 0.19 16 24 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 26 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.08 0.80 8.04 -51.92 -0.42 0.38 16 29 H 0.04 0.41 6.53 -51.93 -0.34 0.07 16 30 H 0.34 3.94 8.00 -39.29 -0.31 3.63 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 324.70 15.07 4.89 4.89 Total: -1.00 -31.74 324.70 -9.21 -40.95 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.43 Total: -1.69 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.51 Total: -19.83 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.15 Total: -41.11 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.74 -9.21 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385296841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.102 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds