Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38223 * 120.41805 * 2 1 4 4 N 1.31856 * 120.76457 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72497 * 359.97438 * 4 3 2 6 6 C 1.38186 * 120.76761 * 0.02562 * 5 4 3 7 7 C 1.38628 * 120.42163 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.78584 * 0.02562 * 7 2 1 9 9 N 1.46892 * 109.47338 * 79.99701 * 8 7 2 10 10 C 1.46903 * 110.99937 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47322 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47275 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46975 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47081 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99909 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00375 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99743 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00307 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46962 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46621 * 120.00189 * 18 16 14 21 21 H 1.48500 * 109.47419 * 240.00374 * 18 16 14 22 22 H 1.08993 * 109.46982 * 90.00050 * 1 2 3 23 23 H 1.08999 * 109.47057 * 210.00365 * 1 2 3 24 24 H 1.09002 * 109.46978 * 329.99732 * 1 2 3 25 25 H 1.08000 * 119.62014 * 0.02562 * 3 2 1 26 26 H 1.08001 * 119.62224 * 179.72558 * 5 4 3 27 27 H 1.07992 * 120.42064 * 179.97438 * 6 5 4 28 28 H 1.09010 * 109.46717 * 199.99710 * 8 7 2 29 29 H 1.08997 * 109.47010 * 319.99065 * 8 7 2 30 30 H 1.00898 * 111.00138 * 303.95148 * 9 8 7 31 31 H 1.08997 * 109.47382 * 300.00513 * 10 9 8 32 32 H 1.09003 * 109.46865 * 59.99849 * 10 9 8 33 33 H 1.09003 * 109.46818 * 300.00473 * 11 10 9 34 34 H 1.08997 * 109.46705 * 60.00293 * 11 10 9 35 35 H 1.08998 * 109.46622 * 300.00409 * 12 11 10 36 36 H 1.09003 * 109.47161 * 59.99886 * 12 11 10 37 37 H 1.09004 * 109.46972 * 299.99425 * 13 12 11 38 38 H 1.08997 * 109.47015 * 59.99953 * 13 12 11 39 39 H 0.97000 * 120.00277 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0824 0.0015 6 6 3.5948 -1.1471 0.0016 7 6 2.2090 -1.1954 0.0005 8 6 1.4831 -2.5161 0.0005 9 7 1.0370 -2.8297 -1.3634 10 6 0.3243 -4.1137 -1.4020 11 6 -0.1244 -4.4051 -2.8355 12 6 -0.8672 -5.7421 -2.8756 13 6 -1.3153 -6.0337 -4.3091 14 6 -2.0475 -7.3503 -4.3485 15 1 -2.1797 -7.9221 -3.4418 16 6 -2.5488 -7.8250 -5.5420 17 7 -2.3874 -7.1290 -6.6462 18 14 -3.4558 -9.4573 -5.5910 19 1 -3.5014 -10.0393 -4.2255 20 1 -4.8401 -9.2397 -6.0824 21 1 -2.7473 -10.3901 -6.5037 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6675 2.1276 0.0004 26 1 5.3046 0.1285 -0.0026 27 1 4.1738 -2.0587 0.0020 28 1 2.1544 -3.2996 0.3525 29 1 0.6181 -2.4553 0.6609 30 1 0.4650 -2.0870 -1.7365 31 1 0.9877 -4.9080 -1.0600 32 1 -0.5488 -4.0643 -0.7513 33 1 -0.7880 -3.6107 -3.1770 34 1 0.7485 -4.4544 -3.4864 35 1 -0.2039 -6.5366 -2.5338 36 1 -1.7402 -5.6924 -2.2246 37 1 -1.9786 -5.2392 -4.6512 38 1 -0.4422 -6.0835 -4.9596 39 1 -2.7397 -7.4630 -7.4860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385296841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = -15.475508 kcal Electronic energy + Delta-G solvation = -16876.905039 eV Core-core repulsion = 14203.242623 eV Total energy + Delta-G solvation = -2673.662415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27862 -38.08734 -36.25567 -34.79688 -33.69923 -32.87174 -30.18225 -28.35768 -27.15437 -25.41762 -23.57877 -22.88963 -22.32544 -21.62992 -18.45753 -17.82375 -17.49115 -16.73086 -16.53786 -16.00471 -15.94241 -15.60228 -14.93138 -14.76034 -14.37555 -14.23693 -13.86915 -13.69221 -13.62838 -13.14968 -12.99659 -12.92074 -12.83952 -12.36829 -12.26754 -12.14446 -12.09002 -11.37247 -11.30342 -11.04791 -10.55975 -10.52049 -10.39533 -9.82070 -9.40385 -8.19990 -6.31409 0.19971 0.27144 1.39812 1.40158 1.53627 2.40890 2.78587 3.12911 3.29940 3.58700 3.73026 3.80864 4.00610 4.04678 4.12383 4.21086 4.47177 4.51584 4.57352 4.60902 4.67654 4.72346 4.78517 4.84740 4.89777 4.93052 5.08425 5.22287 5.24391 5.27940 5.36419 5.43942 5.55772 5.78564 5.81033 5.87344 6.00293 6.25849 6.36376 6.86775 7.04049 7.38114 8.92125 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.052664 B = 0.002876 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.543095 B = 9735.081816 C = 9800.647902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.135 4.135 3 C 0.084 3.916 4 N -0.511 5.511 5 C 0.077 3.923 6 C -0.156 4.156 7 C -0.050 4.050 8 C 0.098 3.902 9 N -0.692 5.692 10 C 0.072 3.928 11 C -0.106 4.106 12 C -0.096 4.096 13 C 0.022 3.978 14 C -0.543 4.543 15 H 0.061 0.939 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.171 0.829 26 H 0.174 0.826 27 H 0.150 0.850 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.343 0.657 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.052 0.948 37 H -0.011 1.011 38 H -0.012 1.012 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 13.850 16.827 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.137 4.137 3 C -0.073 4.073 4 N -0.220 5.220 5 C -0.079 4.079 6 C -0.176 4.176 7 C -0.059 4.059 8 C -0.030 4.030 9 N -0.323 5.323 10 C -0.057 4.057 11 C -0.144 4.144 12 C -0.134 4.134 13 C -0.015 4.015 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.204 1.204 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.188 0.812 26 H 0.191 0.809 27 H 0.168 0.832 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.008 0.992 38 H 0.006 0.994 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.537 14.363 16.483 23.852 hybrid contribution -1.618 -1.277 -0.241 2.076 sum 7.919 13.086 16.242 22.310 Atomic orbital electron populations 1.20840 0.88976 1.04120 1.03284 1.21051 0.98568 0.93480 1.00646 1.22993 0.89837 0.98355 0.96129 1.67664 1.09161 1.32425 1.12744 1.23104 1.01399 0.87518 0.95850 1.22280 0.94632 1.00303 1.00367 1.20280 0.94264 0.94991 0.96319 1.20897 0.98763 0.93321 0.90030 1.60492 1.45936 1.05045 1.20874 1.21881 0.96462 0.91424 0.95949 1.21467 0.99337 0.96935 0.96707 1.21391 0.98770 0.96153 0.97131 1.19033 0.94404 0.94965 0.93134 1.21784 1.35562 1.06397 0.94373 0.92113 1.26031 0.97256 1.01509 0.95336 1.70113 1.47461 1.40351 0.99641 0.85383 0.78072 0.78896 0.78599 1.18456 1.20328 1.20388 0.90376 0.91057 0.89446 0.81172 0.80867 0.83234 0.89295 0.92599 0.83890 0.90636 0.94248 0.92892 0.92861 0.92992 0.92893 0.99232 0.99388 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.08 71.24 0.65 -0.86 16 2 C -0.14 -2.38 5.90 -19.77 -0.12 -2.49 16 3 C 0.08 1.57 10.86 84.69 0.92 2.49 16 4 N -0.51 -11.14 10.36 -195.84 -2.03 -13.17 16 5 C 0.08 1.44 11.18 84.67 0.95 2.39 16 6 C -0.16 -2.79 9.78 22.36 0.22 -2.58 16 7 C -0.05 -0.94 5.43 -19.67 -0.11 -1.04 16 8 C 0.10 1.76 5.30 85.56 0.45 2.21 16 9 N -0.69 -15.41 6.49 -517.93 -3.36 -18.77 16 10 C 0.07 1.78 5.69 86.30 0.49 2.27 16 11 C -0.11 -3.50 5.47 30.60 0.17 -3.33 16 12 C -0.10 -3.89 5.15 30.59 0.16 -3.73 16 13 C 0.02 1.17 4.97 29.85 0.15 1.31 16 14 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 17 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 18 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H 0.08 1.02 8.02 -2.39 -0.02 1.00 16 23 H 0.07 0.91 6.26 -2.39 -0.01 0.89 16 24 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 25 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 26 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 27 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 28 H 0.09 1.50 8.04 -2.38 -0.02 1.48 16 29 H 0.06 0.89 6.53 -2.39 -0.02 0.88 16 30 H 0.34 7.40 8.00 -89.70 -0.72 6.68 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -67.99 324.70 1.84 -66.15 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.30 Total: 10.98 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 4.62 Total: -34.23 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -5.11 Total: -89.45 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.99 1.84 -66.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385296841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.675 kcal (2) G-P(sol) polarization free energy of solvation -67.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds