Wall clock time and date at job start Mon Mar 30 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38677 * 120.41881 * 2 1 4 4 C 1.38628 * 118.41857 * 179.97438 * 3 2 1 5 5 C 1.38215 * 119.16579 * 0.02562 * 4 3 2 6 6 N 1.31854 * 120.76332 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.72838 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.61911 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47173 * 90.00247 * 8 7 6 10 10 C 1.46902 * 111.00190 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47158 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46837 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46818 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47004 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00168 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99855 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99584 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00118 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47082 * 89.99604 * 18 16 14 20 20 H 1.48496 * 109.47083 * 209.99513 * 18 16 14 21 21 H 1.48498 * 109.46952 * 329.99440 * 18 16 14 22 22 H 1.08996 * 109.47087 * 89.99893 * 1 2 3 23 23 H 1.09004 * 109.46666 * 209.99686 * 1 2 3 24 24 H 1.08994 * 109.46982 * 329.99952 * 1 2 3 25 25 H 1.08003 * 120.78604 * 359.96123 * 3 2 1 26 26 H 1.08005 * 120.41354 * 179.97438 * 4 3 2 27 27 H 1.07995 * 119.62265 * 180.02562 * 5 4 3 28 28 H 1.09011 * 109.46908 * 210.00177 * 8 7 6 29 29 H 1.09003 * 109.47334 * 329.99700 * 8 7 6 30 30 H 1.00901 * 110.99927 * 56.04577 * 9 8 7 31 31 H 1.09000 * 109.47328 * 300.00263 * 10 9 8 32 32 H 1.09002 * 109.46941 * 59.99847 * 10 9 8 33 33 H 1.08995 * 109.47090 * 300.00384 * 11 10 9 34 34 H 1.08997 * 109.46553 * 60.00422 * 11 10 9 35 35 H 1.09008 * 109.47162 * 300.00179 * 12 11 10 36 36 H 1.09002 * 109.47253 * 60.00243 * 12 11 10 37 37 H 1.08995 * 109.46776 * 299.99994 * 13 12 11 38 38 H 1.08997 * 109.46886 * 60.00044 * 13 12 11 39 39 H 0.97008 * 119.99817 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2256 -0.0822 0.0005 6 7 3.5255 -1.1995 0.0005 7 6 2.2067 -1.1916 0.0000 8 6 1.4541 -2.4972 -0.0006 9 7 1.2090 -2.9217 1.3841 10 6 0.4750 -4.1936 1.4228 11 6 0.2396 -4.6026 2.8783 12 6 -0.5243 -5.9277 2.9184 13 6 -0.7603 -6.3363 4.3739 14 6 -1.5132 -7.6411 4.4135 15 1 -1.7948 -8.1303 3.4927 16 6 -1.8416 -8.2110 5.6253 17 7 -2.4991 -9.3495 5.6598 18 14 -1.3538 -7.3654 7.2179 19 1 -2.4375 -6.4420 7.6400 20 1 -1.1345 -8.3865 8.2735 21 1 -0.1018 -6.5955 7.0062 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6889 2.1424 -0.0006 26 1 4.1735 2.0593 0.0001 27 1 5.3046 -0.1285 0.0014 28 1 0.5017 -2.3673 -0.5148 29 1 2.0438 -3.2563 -0.5144 30 1 0.7193 -2.2062 1.9004 31 1 -0.4841 -4.0752 0.9186 32 1 1.0576 -4.9647 0.9188 33 1 1.1988 -4.7211 3.3820 34 1 -0.3429 -3.8316 3.3825 35 1 -1.4836 -5.8095 2.4144 36 1 0.0585 -6.6985 2.4142 37 1 0.1988 -6.4543 4.8781 38 1 -1.3433 -5.5654 4.8777 39 1 -2.7305 -9.7503 6.5124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385345351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:53 Heat of formation + Delta-G solvation = 10.478235 kcal Electronic energy + Delta-G solvation = -16920.449311 eV Core-core repulsion = 14247.912335 eV Total energy + Delta-G solvation = -2672.536977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61631 -36.89632 -34.59144 -33.77639 -32.67597 -31.63409 -29.04033 -27.67540 -26.01567 -23.82994 -22.73270 -21.71591 -21.23165 -19.96932 -17.07873 -16.93461 -16.56929 -15.70198 -15.27328 -15.08098 -14.40433 -14.10057 -14.00282 -13.79818 -13.39310 -13.02881 -12.83659 -12.76924 -12.50924 -12.19910 -11.85111 -11.69434 -11.50453 -11.09961 -10.73960 -10.54314 -10.01050 -9.84762 -9.64399 -9.62672 -9.46348 -9.13470 -9.06699 -8.49341 -8.43949 -5.99981 -3.97390 0.80683 1.02307 3.34284 3.41564 3.45121 3.46845 4.01294 4.28462 4.47440 4.49829 4.52179 4.64442 4.71738 5.08817 5.18473 5.21102 5.22783 5.34083 5.34619 5.41106 5.49828 5.58178 5.68452 5.83362 5.89308 5.95539 6.06197 6.14469 6.40056 6.43985 6.70023 6.80105 6.89851 7.07370 7.31644 7.38602 7.51689 7.81824 7.85476 8.59452 9.05449 9.63183 11.13664 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041854 B = 0.003108 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.834964 B = 9007.809132 C = 9090.884051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.133 4.133 3 C -0.078 4.078 4 C -0.174 4.174 5 C 0.093 3.907 6 N -0.463 5.463 7 C 0.136 3.864 8 C 0.105 3.895 9 N -0.681 5.681 10 C 0.060 3.940 11 C -0.118 4.118 12 C -0.101 4.101 13 C -0.014 4.014 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.265 1.265 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.155 0.845 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.337 0.663 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.009 0.991 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 23.274 -13.176 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 C -0.104 4.104 4 C -0.194 4.194 5 C -0.064 4.064 6 N -0.172 5.172 7 C -0.002 4.002 8 C -0.025 4.025 9 N -0.313 5.313 10 C -0.068 4.068 11 C -0.156 4.156 12 C -0.139 4.139 13 C -0.052 4.052 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.189 1.189 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.172 0.828 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.155 0.845 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.290 22.018 -12.993 27.559 hybrid contribution -1.053 1.556 0.674 1.996 sum 9.237 23.573 -12.319 28.156 Atomic orbital electron populations 1.20799 0.90271 1.03285 1.02730 1.20787 0.97530 0.93740 1.01529 1.21461 0.94214 0.97955 0.96795 1.22138 0.95271 0.99675 1.02283 1.22777 1.00376 0.87634 0.95617 1.67512 1.07732 1.31305 1.10619 1.21055 0.89802 0.94215 0.95167 1.20807 0.97449 0.92823 0.91374 1.60478 1.53188 1.05992 1.11618 1.22094 0.95461 0.90640 0.98641 1.21673 1.01076 0.98598 0.94279 1.21417 0.98555 0.94193 0.99733 1.19571 0.96516 0.96663 0.92413 1.21197 1.35259 1.05000 0.94282 0.91119 1.25052 0.94661 0.94751 0.99202 1.69927 1.40375 1.18302 1.25941 0.86756 0.79656 0.79419 0.83344 1.20385 1.21448 1.18937 0.90734 0.91194 0.91051 0.84942 0.84884 0.82783 0.93412 0.89163 0.84467 0.95235 0.90786 0.91559 0.92792 0.93051 0.92731 0.96622 0.97233 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.21 36.01 0.33 -0.48 16 2 C -0.13 -1.24 5.90 -104.48 -0.62 -1.86 16 3 C -0.08 -0.63 9.86 -39.28 -0.39 -1.02 16 4 C -0.17 -1.36 10.11 -39.45 -0.40 -1.76 16 5 C 0.09 0.90 11.18 -17.55 -0.20 0.70 16 6 N -0.46 -5.79 10.27 -9.48 -0.10 -5.88 16 7 C 0.14 1.56 6.29 -82.59 -0.52 1.04 16 8 C 0.10 1.18 5.22 -4.98 -0.03 1.15 16 9 N -0.68 -8.66 6.49 -115.06 -0.75 -9.40 16 10 C 0.06 0.82 5.68 -3.82 -0.02 0.80 16 11 C -0.12 -1.93 5.48 -26.73 -0.15 -2.08 16 12 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 13 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 14 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 18 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.53 6.05 -51.93 -0.31 0.22 16 24 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 26 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 27 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.05 0.46 6.69 -51.92 -0.35 0.11 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.34 3.99 8.04 -39.29 -0.32 3.67 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -32.97 321.45 -8.96 -41.93 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.40 Total: -1.50 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.66 Total: -19.83 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.07 Total: -43.04 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.97 -8.96 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385345351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.408 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds