Wall clock time and date at job start Mon Mar 30 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38677 * 120.41881 * 2 1 4 4 C 1.38628 * 118.41857 * 179.97438 * 3 2 1 5 5 C 1.38215 * 119.16579 * 0.02562 * 4 3 2 6 6 N 1.31854 * 120.76332 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.72838 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.61911 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47173 * 90.00247 * 8 7 6 10 10 C 1.46902 * 111.00190 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47158 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46837 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46818 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47004 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00168 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99855 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99584 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00118 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47082 * 89.99604 * 18 16 14 20 20 H 1.48496 * 109.47083 * 209.99513 * 18 16 14 21 21 H 1.48498 * 109.46952 * 329.99440 * 18 16 14 22 22 H 1.08996 * 109.47087 * 89.99893 * 1 2 3 23 23 H 1.09004 * 109.46666 * 209.99686 * 1 2 3 24 24 H 1.08994 * 109.46982 * 329.99952 * 1 2 3 25 25 H 1.08003 * 120.78604 * 359.96123 * 3 2 1 26 26 H 1.08005 * 120.41354 * 179.97438 * 4 3 2 27 27 H 1.07995 * 119.62265 * 180.02562 * 5 4 3 28 28 H 1.09011 * 109.46908 * 210.00177 * 8 7 6 29 29 H 1.09003 * 109.47334 * 329.99700 * 8 7 6 30 30 H 1.00901 * 110.99927 * 56.04577 * 9 8 7 31 31 H 1.09000 * 109.47328 * 300.00263 * 10 9 8 32 32 H 1.09002 * 109.46941 * 59.99847 * 10 9 8 33 33 H 1.08995 * 109.47090 * 300.00384 * 11 10 9 34 34 H 1.08997 * 109.46553 * 60.00422 * 11 10 9 35 35 H 1.09008 * 109.47162 * 300.00179 * 12 11 10 36 36 H 1.09002 * 109.47253 * 60.00243 * 12 11 10 37 37 H 1.08995 * 109.46776 * 299.99994 * 13 12 11 38 38 H 1.08997 * 109.46886 * 60.00044 * 13 12 11 39 39 H 0.97008 * 119.99817 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2256 -0.0822 0.0005 6 7 3.5255 -1.1995 0.0005 7 6 2.2067 -1.1916 0.0000 8 6 1.4541 -2.4972 -0.0006 9 7 1.2090 -2.9217 1.3841 10 6 0.4750 -4.1936 1.4228 11 6 0.2396 -4.6026 2.8783 12 6 -0.5243 -5.9277 2.9184 13 6 -0.7603 -6.3363 4.3739 14 6 -1.5132 -7.6411 4.4135 15 1 -1.7948 -8.1303 3.4927 16 6 -1.8416 -8.2110 5.6253 17 7 -2.4991 -9.3495 5.6598 18 14 -1.3538 -7.3654 7.2179 19 1 -2.4375 -6.4420 7.6400 20 1 -1.1345 -8.3865 8.2735 21 1 -0.1018 -6.5955 7.0062 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6889 2.1424 -0.0006 26 1 4.1735 2.0593 0.0001 27 1 5.3046 -0.1285 0.0014 28 1 0.5017 -2.3673 -0.5148 29 1 2.0438 -3.2563 -0.5144 30 1 0.7193 -2.2062 1.9004 31 1 -0.4841 -4.0752 0.9186 32 1 1.0576 -4.9647 0.9188 33 1 1.1988 -4.7211 3.3820 34 1 -0.3429 -3.8316 3.3825 35 1 -1.4836 -5.8095 2.4144 36 1 0.0585 -6.6985 2.4142 37 1 0.1988 -6.4543 4.8781 38 1 -1.3433 -5.5654 4.8777 39 1 -2.7305 -9.7503 6.5124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385345351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:53 Heat of formation + Delta-G solvation = -11.279083 kcal Electronic energy + Delta-G solvation = -16921.392779 eV Core-core repulsion = 14247.912335 eV Total energy + Delta-G solvation = -2673.480445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29805 -38.00018 -36.09675 -34.63392 -34.22757 -32.89083 -30.51043 -28.43539 -27.18113 -25.27634 -23.42579 -22.70747 -22.44148 -21.66070 -18.86551 -17.82289 -17.58558 -16.68234 -16.37496 -16.07378 -15.97195 -15.39496 -14.94148 -14.74713 -14.64621 -14.00878 -13.91917 -13.72179 -13.59525 -13.41028 -13.22087 -12.98636 -12.83982 -12.31063 -12.27384 -12.06102 -11.74401 -11.38242 -11.32221 -11.22280 -10.75899 -10.65012 -10.31146 -9.78249 -9.38716 -8.29411 -6.33360 0.13835 0.38053 1.35617 1.38227 1.50843 2.36894 2.72562 3.05953 3.25141 3.47233 3.79965 3.93791 4.00773 4.09618 4.15106 4.20406 4.45542 4.50857 4.54838 4.59319 4.65153 4.73685 4.76735 4.80068 4.86405 4.91074 5.13905 5.15324 5.19930 5.25892 5.26517 5.34317 5.58129 5.66170 5.68942 5.81342 5.99192 6.29800 6.39466 6.74983 7.12203 7.31463 8.87611 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041854 B = 0.003108 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.834964 B = 9007.809132 C = 9090.884051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.137 4.137 3 C -0.083 4.083 4 C -0.166 4.166 5 C 0.073 3.927 6 N -0.503 5.503 7 C 0.109 3.891 8 C 0.110 3.890 9 N -0.689 5.689 10 C 0.069 3.931 11 C -0.106 4.106 12 C -0.094 4.094 13 C -0.013 4.013 14 C -0.535 4.535 15 H 0.030 0.970 16 C 0.000 4.000 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.248 1.248 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.162 0.838 26 H 0.164 0.836 27 H 0.171 0.829 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.343 0.657 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.019 0.981 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.850 26.471 -12.723 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.140 4.140 3 C -0.108 4.108 4 C -0.186 4.186 5 C -0.084 4.084 6 N -0.212 5.212 7 C -0.029 4.029 8 C -0.020 4.020 9 N -0.321 5.321 10 C -0.059 4.059 11 C -0.144 4.144 12 C -0.133 4.133 13 C -0.050 4.050 14 C -0.573 4.573 15 H 0.049 0.951 16 C -0.196 4.196 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.172 1.172 22 H 0.102 0.898 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.179 0.821 26 H 0.182 0.818 27 H 0.188 0.812 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.162 0.838 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.037 0.963 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.837 25.230 -12.561 30.196 hybrid contribution -1.219 0.552 0.443 1.410 sum 9.618 25.782 -12.118 30.068 Atomic orbital electron populations 1.20837 0.88848 1.03748 1.03487 1.21030 0.98641 0.93509 1.00784 1.21882 0.94505 0.98669 0.95788 1.22495 0.95639 1.00098 1.00347 1.23185 1.01321 0.87879 0.95968 1.67434 1.08613 1.33115 1.12013 1.21102 0.89847 0.94835 0.97089 1.20748 0.98028 0.92776 0.90401 1.60389 1.53099 1.05754 1.12885 1.21890 0.96117 0.91198 0.96734 1.21486 1.00101 0.96615 0.96216 1.21287 0.99091 0.96108 0.96768 1.19545 0.95669 0.94360 0.95449 1.21576 1.35734 1.06936 0.93020 0.95113 1.26077 0.94536 0.95436 1.03535 1.70081 1.41909 1.20198 1.27244 0.85601 0.80199 0.78533 0.77976 1.18913 1.20936 1.17183 0.89763 0.91817 0.89474 0.82060 0.81799 0.81170 0.91786 0.90664 0.83804 0.94109 0.91402 0.92274 0.91710 0.93099 0.93555 0.96567 0.96284 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.21 71.24 0.66 -0.68 16 2 C -0.14 -2.30 5.90 -19.77 -0.12 -2.41 16 3 C -0.08 -1.09 9.86 22.47 0.22 -0.87 16 4 C -0.17 -2.18 10.11 22.36 0.23 -1.95 16 5 C 0.07 1.33 11.18 84.68 0.95 2.28 16 6 N -0.50 -12.40 10.27 -183.90 -1.89 -14.28 16 7 C 0.11 2.42 6.29 42.54 0.27 2.69 16 8 C 0.11 2.40 5.22 85.56 0.45 2.85 16 9 N -0.69 -16.77 6.49 -517.93 -3.36 -20.14 16 10 C 0.07 1.81 5.68 86.30 0.49 2.30 16 11 C -0.11 -3.31 5.48 30.60 0.17 -3.14 16 12 C -0.09 -3.73 5.15 30.60 0.16 -3.57 16 13 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 14 C -0.53 -31.90 9.66 25.60 0.25 -31.66 16 15 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 16 C 0.00 0.03 5.47 84.65 0.46 0.49 16 17 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 18 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 19 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 22 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.84 6.05 -2.39 -0.01 0.82 16 24 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 25 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 26 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 27 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.06 1.16 6.69 -2.38 -0.02 1.14 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.34 7.58 8.04 -89.69 -0.72 6.86 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 38 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 39 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -72.28 321.45 1.47 -70.81 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.24 Total: 11.42 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 4.30 Total: -34.17 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -4.95 Total: -95.41 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -72.28 1.47 -70.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385345351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.535 kcal (2) G-P(sol) polarization free energy of solvation -72.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds