Wall clock time and date at job start Mon Mar 30 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.46928 * 2 1 4 4 C 1.38104 * 120.03861 * 264.99328 * 3 2 1 5 5 C 1.38286 * 120.07376 * 179.72867 * 4 3 2 6 6 C 1.50699 * 119.92533 * 180.27908 * 5 4 3 7 7 H 1.09006 * 109.47088 * 340.00242 * 6 5 4 8 8 N 1.46893 * 109.47407 * 220.00333 * 6 5 4 9 9 C 1.50696 * 109.47193 * 100.00142 * 6 5 4 10 10 H 1.07997 * 120.00301 * 0.02562 * 9 6 5 11 11 C 1.37885 * 120.00238 * 180.02562 * 9 6 5 12 12 N 1.31508 * 119.99608 * 359.97438 * 11 9 6 13 13 Si 1.86795 * 120.00041 * 179.97438 * 11 9 6 14 14 H 1.48498 * 109.47328 * 359.97438 * 13 11 9 15 15 H 1.48509 * 109.47058 * 120.00037 * 13 11 9 16 16 H 1.48499 * 109.47352 * 239.99825 * 13 11 9 17 17 C 1.38289 * 120.15231 * 0.25962 * 5 4 3 18 18 C 1.38099 * 120.07103 * 0.02562 * 17 5 4 19 19 C 1.50699 * 120.03763 * 180.02562 * 18 17 5 20 20 C 1.52999 * 109.47441 * 265.00623 * 19 18 17 21 21 C 1.38905 * 119.92864 * 0.02562 * 18 17 5 22 22 N 1.39675 * 120.07729 * 179.97438 * 21 18 17 23 23 H 1.09005 * 109.47055 * 60.00197 * 1 2 3 24 24 H 1.09003 * 109.47535 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47315 * 299.99945 * 1 2 3 26 26 H 1.09005 * 109.47094 * 240.00047 * 2 1 3 27 27 H 1.08995 * 109.46672 * 120.00153 * 2 1 3 28 28 H 1.08002 * 119.96506 * 0.02562 * 4 3 2 29 29 H 1.00898 * 111.00355 * 176.04780 * 8 6 5 30 30 H 1.00903 * 111.00229 * 299.99637 * 8 6 5 31 31 H 0.97004 * 119.99734 * 180.02562 * 12 11 9 32 32 H 1.07997 * 119.96283 * 180.02562 * 17 5 4 33 33 H 1.09005 * 109.46787 * 25.00566 * 19 18 17 34 34 H 1.08999 * 109.47615 * 144.99642 * 19 18 17 35 35 H 1.09006 * 109.46995 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.46881 * 299.99128 * 20 19 18 37 37 H 1.08998 * 109.47148 * 59.99841 * 20 19 18 38 38 H 0.96998 * 120.00154 * 359.97438 * 22 21 18 39 39 H 0.97001 * 119.99798 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0378 -1.1910 5 6 2.8167 3.3434 -1.1923 6 6 3.1686 4.0155 -2.4944 7 1 3.3467 3.2581 -3.2578 8 7 4.3812 4.8251 -2.3157 9 6 2.0302 4.9043 -2.9247 10 1 1.1410 4.9757 -2.3159 11 6 2.1238 5.6264 -4.0956 12 7 3.2067 5.5399 -4.8366 13 14 0.7123 6.7275 -4.6291 14 1 -0.3824 6.6487 -3.6290 15 1 1.1900 8.1300 -4.7315 16 1 0.2072 6.2790 -5.9516 17 6 2.9499 4.0339 -0.0016 18 6 2.6285 3.4209 1.1934 19 6 2.7733 4.1742 2.4906 20 6 4.1338 3.8579 3.1149 21 6 2.1715 2.1092 1.1986 22 7 1.8460 1.4860 2.4055 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2577 1.5016 -2.1228 29 1 4.6747 5.2347 -3.1898 30 1 4.2416 5.5352 -1.6125 31 1 3.2727 6.0482 -5.6602 32 1 3.3056 5.0536 -0.0062 33 1 2.7016 5.2449 2.2988 34 1 1.9805 3.8740 3.1757 35 1 4.2387 4.4032 4.0530 36 1 4.2054 2.7874 3.3067 37 1 4.9266 4.1583 2.4299 38 1 1.9393 1.9691 3.2414 39 1 1.5274 0.5698 2.4077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390240696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:54 Heat of formation + Delta-G solvation = -4.179593 kcal Electronic energy + Delta-G solvation = -18313.376830 eV Core-core repulsion = 15640.204243 eV Total energy + Delta-G solvation = -2673.172588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40025 -35.58417 -34.63410 -33.19065 -31.84232 -30.82173 -28.48932 -27.52027 -25.61153 -23.65500 -23.28394 -22.18668 -19.85344 -18.92514 -16.95025 -16.46793 -16.32029 -15.01892 -14.31749 -14.16583 -13.85032 -13.80128 -13.70817 -13.05308 -12.90364 -12.61818 -12.37456 -12.27640 -11.68812 -11.55280 -11.35460 -11.22758 -11.13983 -10.92051 -10.87338 -10.62136 -10.49186 -10.07672 -9.95092 -9.51707 -9.39761 -8.56387 -7.84731 -7.14812 -6.66786 -5.98791 -4.17188 2.16018 2.46961 3.24599 3.33330 3.38751 4.32117 4.36266 4.63419 5.13776 5.18704 5.23171 5.31178 5.37025 5.62175 5.68500 5.79799 5.83819 5.93084 5.95040 6.06101 6.19536 6.20204 6.22072 6.38137 6.44420 6.52027 6.70635 6.78706 6.82993 7.06344 7.31776 7.43632 7.63816 7.82178 7.94208 8.10027 8.16544 8.24139 8.77902 9.04153 9.21621 9.54515 10.95811 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.006797 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.078134 B = 4118.416907 C = 4749.698595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C -0.163 4.163 4 C -0.080 4.080 5 C -0.070 4.070 6 C 0.245 3.755 7 H 0.042 0.958 8 N -0.850 5.850 9 C -0.537 4.537 10 H 0.055 0.945 11 C 0.064 3.936 12 N -0.895 5.895 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.063 4.063 18 C -0.164 4.164 19 C -0.070 4.070 20 C -0.145 4.145 21 C 0.195 3.805 22 N -0.887 5.887 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.353 0.647 30 H 0.309 0.691 31 H 0.263 0.737 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.389 0.611 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 -6.942 13.043 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.167 4.167 4 C -0.100 4.100 5 C -0.073 4.073 6 C 0.135 3.865 7 H 0.060 0.940 8 N -0.379 5.379 9 C -0.577 4.577 10 H 0.074 0.926 11 C -0.138 4.138 12 N -0.535 5.535 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.082 4.082 18 C -0.168 4.168 19 C -0.108 4.108 20 C -0.203 4.203 21 C 0.093 3.907 22 N -0.430 5.430 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.169 0.831 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.218 0.782 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.557 -7.543 13.020 15.128 hybrid contribution -1.554 1.327 -0.505 2.105 sum -3.112 -6.216 12.515 14.316 Atomic orbital electron populations 1.21766 0.95654 1.00629 1.02342 1.20240 0.95407 0.93550 1.01510 1.19148 1.09083 0.96371 0.92096 1.20652 0.98487 0.94743 0.96069 1.20168 0.97676 0.93110 0.96310 1.17894 0.87831 0.92616 0.88169 0.94025 1.59537 1.35288 1.28848 1.14224 1.21946 1.03266 1.25811 1.06700 0.92641 1.25029 0.95960 0.96792 0.96006 1.69760 1.27114 1.42028 1.14623 0.86519 0.82585 0.80254 0.78539 1.19779 1.21030 1.20943 1.20550 0.97734 0.99138 0.90790 1.19211 1.08809 0.93537 0.95236 1.20248 0.96820 0.99673 0.94043 1.21759 0.97567 1.01102 0.99864 1.17160 0.96442 0.91404 0.85653 1.42424 1.78155 1.16743 1.05666 0.92317 0.93283 0.92982 0.91518 0.92527 0.86999 0.83131 0.88125 0.92671 0.86833 0.91474 0.92569 0.93315 0.93026 0.92286 0.78215 0.78234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 37.16 0.37 -1.46 16 2 C -0.07 -0.95 5.51 -27.89 -0.15 -1.10 16 3 C -0.16 -2.79 5.15 -104.42 -0.54 -3.33 16 4 C -0.08 -1.63 9.29 -39.61 -0.37 -2.00 16 5 C -0.07 -1.57 4.90 -104.59 -0.51 -2.09 16 6 C 0.24 6.24 2.95 -70.02 -0.21 6.03 16 7 H 0.04 1.17 8.00 -51.93 -0.42 0.75 16 8 N -0.85 -20.75 9.02 -6.65 -0.06 -20.81 16 9 C -0.54 -14.73 8.70 -34.44 -0.30 -15.03 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.75 5.38 -17.82 -0.10 1.65 16 12 N -0.90 -25.08 11.54 55.43 0.64 -24.45 16 13 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C -0.06 -1.28 8.92 -39.61 -0.35 -1.63 16 18 C -0.16 -2.82 5.15 -104.43 -0.54 -3.36 16 19 C -0.07 -0.97 5.50 -27.88 -0.15 -1.12 16 20 C -0.15 -1.78 9.89 37.16 0.37 -1.41 16 21 C 0.20 3.17 6.72 -83.79 -0.56 2.61 16 22 N -0.89 -10.83 8.89 32.41 0.29 -10.54 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 27 H 0.06 0.67 6.79 -51.93 -0.35 0.32 16 28 H 0.11 2.22 8.03 -52.49 -0.42 1.80 16 29 H 0.35 9.20 7.08 -39.29 -0.28 8.93 16 30 H 0.31 7.18 7.33 -39.29 -0.29 6.89 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.11 2.29 6.66 -52.49 -0.35 1.94 16 33 H 0.07 0.92 8.05 -51.93 -0.42 0.51 16 34 H 0.06 0.68 6.82 -51.93 -0.35 0.33 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.39 4.13 6.94 -40.82 -0.28 3.85 16 39 H 0.39 4.11 6.93 -40.82 -0.28 3.83 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -28.60 313.84 -8.41 -37.00 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -5.94 Total: 20.01 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -3.05 Total: -22.24 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.87 Total: -55.80 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.60 -8.41 -37.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390240696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.824 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds