Wall clock time and date at job start Mon Mar 30 2020 06:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46740 * 2 1 4 4 C 1.53001 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47137 * 54.99530 * 4 3 2 6 6 C 1.52991 * 109.47304 * 174.99930 * 4 3 2 7 7 C 1.52996 * 109.47416 * 184.99781 * 6 4 3 8 8 N 1.46504 * 109.46753 * 294.99908 * 4 3 2 9 9 C 1.32212 * 120.00058 * 125.79272 * 8 4 3 10 10 C 1.46917 * 120.83309 * 6.11998 * 9 8 4 11 11 C 1.34376 * 119.37010 * 179.97438 * 10 9 8 12 12 N 1.36435 * 121.21857 * 359.97438 * 11 10 9 13 13 H 0.96998 * 119.08351 * 179.97438 * 12 11 10 14 14 C 1.37761 * 121.82000 * 0.02562 * 12 11 10 15 15 C 1.40177 * 119.74101 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99878 * 202.15698 * 15 14 12 17 17 C 1.40352 * 119.99999 * 22.16493 * 15 14 12 18 18 N 1.30584 * 120.00105 * 17.72510 * 17 15 14 19 19 Si 1.86800 * 119.99815 * 197.73105 * 17 15 14 20 20 H 1.48497 * 109.47408 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47211 * 120.00005 * 19 17 15 22 22 H 1.48500 * 109.46991 * 239.99879 * 19 17 15 23 23 C 1.39070 * 120.51165 * 359.69471 * 14 12 11 24 24 H 1.09003 * 109.46489 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47215 * 300.00113 * 1 2 3 26 26 H 1.09005 * 109.47289 * 60.00674 * 1 2 3 27 27 H 1.08993 * 109.47215 * 239.99887 * 2 1 3 28 28 H 1.09002 * 109.46907 * 119.99669 * 2 1 3 29 29 H 1.08993 * 109.47359 * 59.99975 * 3 2 1 30 30 H 1.09002 * 109.47150 * 299.99519 * 3 2 1 31 31 H 1.08996 * 109.47303 * 304.99714 * 6 4 3 32 32 H 1.09003 * 109.47202 * 64.99643 * 6 4 3 33 33 H 1.09000 * 109.47706 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47179 * 299.99864 * 7 6 4 35 35 H 1.09003 * 109.47048 * 59.99768 * 7 6 4 36 36 H 1.07997 * 120.31771 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.39495 * 180.02562 * 11 10 9 38 38 H 0.96997 * 119.99607 * 180.02562 * 18 17 15 39 39 H 1.08007 * 120.62516 * 180.28403 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0799 2.8796 -0.1264 7 6 5.6046 2.8706 -0.2524 8 7 4.0588 0.8587 1.2509 9 6 4.9105 -0.1520 1.2206 10 6 5.4817 -0.6175 -0.0505 11 6 6.3452 -1.6471 -0.0472 12 7 6.7013 -2.2676 1.1145 13 1 7.3269 -3.0081 1.0809 14 6 6.1962 -1.8722 2.3336 15 6 6.5917 -2.5412 3.5003 16 1 5.9699 -2.5017 4.3825 17 6 7.7956 -3.2622 3.5219 18 7 8.7054 -3.0413 2.6116 19 14 8.0965 -4.5378 4.8530 20 1 6.9200 -4.5969 5.7571 21 1 8.3069 -5.8674 4.2259 22 1 9.3023 -4.1627 5.6344 23 6 5.3015 -0.8107 2.4165 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.6449 3.3433 -1.0117 32 1 3.7918 3.4461 0.7592 33 1 5.9679 3.8943 -0.3415 34 1 6.0396 2.4069 0.6330 35 1 5.8926 2.3040 -1.1379 36 1 5.2109 -0.1361 -0.9786 37 1 6.7656 -1.9893 -0.9812 38 1 9.5373 -3.5399 2.6264 39 1 4.9079 -0.4962 3.3719 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390440879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:38 Heat of formation + Delta-G solvation = 7.775051 kcal Electronic energy + Delta-G solvation = -18054.124500 eV Core-core repulsion = 15381.470305 eV Total energy + Delta-G solvation = -2672.654196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.57213 -36.65564 -34.11098 -33.17855 -32.01620 -30.53700 -28.77495 -27.24742 -25.87052 -23.54103 -21.70122 -21.00100 -20.52849 -19.03678 -18.00412 -16.58301 -15.58556 -15.24746 -14.62259 -14.13991 -13.84090 -13.80742 -13.21245 -12.99171 -12.78674 -12.62171 -11.97158 -11.89268 -11.82660 -11.58648 -11.46800 -11.06803 -10.89475 -10.74483 -10.63821 -10.39776 -10.21227 -10.14618 -10.02453 -9.95612 -9.65854 -9.14002 -8.20123 -7.40193 -7.25852 -5.90167 -4.72743 2.60038 2.80298 2.89323 2.96239 3.19045 3.66347 4.31832 4.66984 5.30580 5.36421 5.45993 5.60242 5.64484 5.69553 5.84562 5.93940 5.96610 6.15095 6.21690 6.30467 6.33557 6.36503 6.46865 6.56278 6.71173 6.73155 6.75416 6.83193 6.86963 6.90687 6.97340 6.99035 7.11661 7.45844 7.73606 7.81282 8.02873 8.31632 8.35246 8.85588 8.97873 9.72704 9.84111 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.005478 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.188910 B = 5109.749501 C = 5603.949474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.099 4.099 4 C 0.085 3.915 5 H 0.031 0.969 6 C -0.111 4.111 7 C -0.143 4.143 8 N -0.654 5.654 9 C 0.285 3.715 10 C -0.298 4.298 11 C 0.122 3.878 12 N -0.603 5.603 13 H 0.412 0.588 14 C 0.329 3.671 15 C -0.467 4.467 16 H 0.102 0.898 17 C 0.077 3.923 18 N -0.814 5.814 19 Si 0.921 3.079 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.271 1.271 23 C -0.360 4.360 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.291 0.709 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 -0.345 -4.916 5.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.027 4.027 5 H 0.049 0.951 6 C -0.149 4.149 7 C -0.200 4.200 8 N -0.380 5.380 9 C 0.121 3.879 10 C -0.328 4.328 11 C -0.008 4.008 12 N -0.214 5.214 13 H 0.252 0.748 14 C 0.221 3.779 15 C -0.500 4.500 16 H 0.120 0.880 17 C -0.141 4.141 18 N -0.442 5.442 19 Si 0.745 3.255 20 H -0.179 1.179 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.389 4.389 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.102 0.898 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.232 0.255 -4.472 5.524 hybrid contribution 0.959 -1.060 -0.505 1.516 sum -2.273 -0.805 -4.977 5.531 Atomic orbital electron populations 1.21771 0.97067 1.00717 1.00960 1.21421 0.94246 0.97800 1.02111 1.21530 0.96290 0.95934 0.99987 1.21335 0.93228 0.93940 0.94219 0.95098 1.21564 0.95497 0.98007 0.99855 1.21666 0.96696 0.99728 1.01924 1.73362 1.24665 1.17515 1.22493 1.20174 0.88514 0.88895 0.90276 1.22305 1.07391 1.03458 0.99615 1.21228 0.95909 0.94281 0.89372 1.42038 1.43059 1.32393 1.03941 0.74771 1.17616 0.87517 0.89337 0.83466 1.19535 1.04805 1.27100 0.98538 0.87969 1.26185 0.94559 0.96090 0.97278 1.69356 1.06208 1.34945 1.33677 0.86014 0.79654 0.79383 0.80457 1.17851 1.19473 1.19586 1.20185 1.17333 1.05072 0.96278 0.93471 0.93075 0.93594 0.93361 0.91062 0.92327 0.93863 0.93887 0.92401 0.94288 0.91934 0.93874 0.86753 0.85486 0.89801 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -2.04 5.82 -26.73 -0.16 -2.20 16 3 C -0.10 -1.76 4.89 -26.73 -0.13 -1.89 16 4 C 0.08 1.68 2.19 -67.93 -0.15 1.53 16 5 H 0.03 0.63 5.32 -51.93 -0.28 0.35 16 6 C -0.11 -2.01 5.61 -26.74 -0.15 -2.16 16 7 C -0.14 -2.56 9.80 37.16 0.36 -2.20 16 8 N -0.65 -15.29 9.13 -50.79 -0.46 -15.75 16 9 C 0.29 6.85 6.64 -82.74 -0.55 6.30 16 10 C -0.30 -6.33 9.34 -37.43 -0.35 -6.68 16 11 C 0.12 2.41 11.15 -16.87 -0.19 2.22 16 12 N -0.60 -13.19 4.89 -10.83 -0.05 -13.25 16 13 H 0.41 8.65 6.33 -40.82 -0.26 8.39 16 14 C 0.33 8.04 6.37 -84.16 -0.54 7.51 16 15 C -0.47 -11.10 9.03 -38.06 -0.34 -11.45 16 16 H 0.10 2.39 7.91 -52.49 -0.42 1.97 16 17 C 0.08 1.67 5.17 -17.29 -0.09 1.58 16 18 N -0.81 -17.85 11.12 55.57 0.62 -17.23 16 19 Si 0.92 16.45 29.60 -169.99 -5.03 11.42 16 20 H -0.26 -4.61 7.11 56.52 0.40 -4.20 16 21 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 22 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 23 C -0.36 -9.13 9.83 -37.82 -0.37 -9.50 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.44 7.75 -51.93 -0.40 1.04 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.31 7.60 -51.93 -0.39 0.91 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 2.27 5.99 -52.49 -0.31 1.95 16 37 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.29 5.73 8.29 -40.82 -0.34 5.39 16 39 H 0.11 2.90 8.06 -52.48 -0.42 2.48 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -25.51 318.54 -8.68 -34.19 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -6.27 Total: 14.47 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.28 Total: -18.65 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.10 Total: -46.23 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -25.51 -8.68 -34.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390440879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.966 kcal (2) G-P(sol) polarization free energy of solvation -25.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds