Wall clock time and date at job start Mon Mar 30 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46740 * 2 1 4 4 C 1.53001 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47137 * 54.99530 * 4 3 2 6 6 C 1.52991 * 109.47304 * 174.99930 * 4 3 2 7 7 C 1.52996 * 109.47416 * 184.99781 * 6 4 3 8 8 N 1.46504 * 109.46753 * 294.99908 * 4 3 2 9 9 C 1.32212 * 120.00058 * 125.79272 * 8 4 3 10 10 C 1.46917 * 120.83309 * 6.11998 * 9 8 4 11 11 C 1.34376 * 119.37010 * 179.97438 * 10 9 8 12 12 N 1.36435 * 121.21857 * 359.97438 * 11 10 9 13 13 H 0.96998 * 119.08351 * 179.97438 * 12 11 10 14 14 C 1.37761 * 121.82000 * 0.02562 * 12 11 10 15 15 C 1.40177 * 119.74101 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99878 * 202.15698 * 15 14 12 17 17 C 1.40352 * 119.99999 * 22.16493 * 15 14 12 18 18 N 1.30584 * 120.00105 * 17.72510 * 17 15 14 19 19 Si 1.86800 * 119.99815 * 197.73105 * 17 15 14 20 20 H 1.48497 * 109.47408 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47211 * 120.00005 * 19 17 15 22 22 H 1.48500 * 109.46991 * 239.99879 * 19 17 15 23 23 C 1.39070 * 120.51165 * 359.69471 * 14 12 11 24 24 H 1.09003 * 109.46489 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47215 * 300.00113 * 1 2 3 26 26 H 1.09005 * 109.47289 * 60.00674 * 1 2 3 27 27 H 1.08993 * 109.47215 * 239.99887 * 2 1 3 28 28 H 1.09002 * 109.46907 * 119.99669 * 2 1 3 29 29 H 1.08993 * 109.47359 * 59.99975 * 3 2 1 30 30 H 1.09002 * 109.47150 * 299.99519 * 3 2 1 31 31 H 1.08996 * 109.47303 * 304.99714 * 6 4 3 32 32 H 1.09003 * 109.47202 * 64.99643 * 6 4 3 33 33 H 1.09000 * 109.47706 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47179 * 299.99864 * 7 6 4 35 35 H 1.09003 * 109.47048 * 59.99768 * 7 6 4 36 36 H 1.07997 * 120.31771 * 0.02562 * 10 9 8 37 37 H 1.07993 * 119.39495 * 180.02562 * 11 10 9 38 38 H 0.96997 * 119.99607 * 180.02562 * 18 17 15 39 39 H 1.08007 * 120.62516 * 180.28403 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0799 2.8796 -0.1264 7 6 5.6046 2.8706 -0.2524 8 7 4.0588 0.8587 1.2509 9 6 4.9105 -0.1520 1.2206 10 6 5.4817 -0.6175 -0.0505 11 6 6.3452 -1.6471 -0.0472 12 7 6.7013 -2.2676 1.1145 13 1 7.3269 -3.0081 1.0809 14 6 6.1962 -1.8722 2.3336 15 6 6.5917 -2.5412 3.5003 16 1 5.9699 -2.5017 4.3825 17 6 7.7956 -3.2622 3.5219 18 7 8.7054 -3.0413 2.6116 19 14 8.0965 -4.5378 4.8530 20 1 6.9200 -4.5969 5.7571 21 1 8.3069 -5.8674 4.2259 22 1 9.3023 -4.1627 5.6344 23 6 5.3015 -0.8107 2.4165 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.6449 3.3433 -1.0117 32 1 3.7918 3.4461 0.7592 33 1 5.9679 3.8943 -0.3415 34 1 6.0396 2.4069 0.6330 35 1 5.8926 2.3040 -1.1379 36 1 5.2109 -0.1361 -0.9786 37 1 6.7656 -1.9893 -0.9812 38 1 9.5373 -3.5399 2.6264 39 1 4.9079 -0.4962 3.3719 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390440879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:37 Heat of formation + Delta-G solvation = -5.306106 kcal Electronic energy + Delta-G solvation = -18054.691742 eV Core-core repulsion = 15381.470305 eV Total energy + Delta-G solvation = -2673.221437 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29141 -38.21831 -35.79492 -34.65638 -33.62145 -32.28665 -30.31255 -28.83310 -27.61456 -24.94856 -23.40339 -22.67811 -21.91009 -20.65494 -19.74190 -18.33811 -17.20486 -16.82197 -16.31314 -15.57233 -15.41142 -15.27193 -14.67391 -14.49803 -14.37202 -14.28150 -13.53646 -13.22458 -13.19525 -13.16087 -12.95142 -12.73678 -12.40380 -12.32960 -12.13036 -11.92136 -11.72534 -11.68027 -11.50426 -11.46069 -11.29426 -10.76424 -9.95362 -9.12520 -8.95135 -7.65119 -6.58499 0.98252 1.15467 1.41866 1.56116 1.62652 2.16795 2.59748 2.97024 3.56401 3.89707 4.02864 4.18367 4.27033 4.34616 4.47011 4.49745 4.54752 4.63662 4.84504 4.92076 4.93314 4.98780 5.02332 5.07382 5.08520 5.10321 5.22370 5.26350 5.33850 5.43109 5.45511 5.55633 5.58930 5.72213 5.91943 6.04495 6.15628 6.54561 6.57456 7.06598 7.24812 8.05658 8.10801 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026886 B = 0.005478 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.188910 B = 5109.749501 C = 5603.949474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.095 4.095 4 C 0.078 3.922 5 H 0.030 0.970 6 C -0.108 4.108 7 C -0.136 4.136 8 N -0.679 5.679 9 C 0.270 3.730 10 C -0.311 4.311 11 C 0.129 3.871 12 N -0.604 5.604 13 H 0.416 0.584 14 C 0.319 3.681 15 C -0.497 4.497 16 H 0.092 0.908 17 C 0.051 3.949 18 N -0.824 5.824 19 Si 0.993 3.007 20 H -0.263 1.263 21 H -0.254 1.254 22 H -0.266 1.266 23 C -0.404 4.404 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.131 0.869 37 H 0.179 0.821 38 H 0.305 0.695 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.413 -1.049 -6.638 7.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.133 4.133 4 C -0.033 4.033 5 H 0.048 0.952 6 C -0.146 4.146 7 C -0.194 4.194 8 N -0.404 5.404 9 C 0.105 3.895 10 C -0.340 4.340 11 C 0.001 3.999 12 N -0.216 5.216 13 H 0.257 0.743 14 C 0.210 3.790 15 C -0.529 4.529 16 H 0.110 0.890 17 C -0.167 4.167 18 N -0.451 5.451 19 Si 0.813 3.187 20 H -0.187 1.187 21 H -0.177 1.177 22 H -0.190 1.190 23 C -0.434 4.434 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.149 0.851 37 H 0.196 0.804 38 H 0.117 0.883 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.749 -0.428 -6.222 6.816 hybrid contribution 0.852 -0.806 0.032 1.173 sum -1.897 -1.234 -6.191 6.591 Atomic orbital electron populations 1.21711 0.94394 1.01727 1.01999 1.21352 0.96603 0.97123 1.00169 1.21513 0.94769 0.96317 1.00722 1.21514 0.94581 0.94676 0.92561 0.95229 1.21552 0.95632 0.96745 1.00696 1.21594 0.96533 1.00900 1.00337 1.73254 1.24400 1.17414 1.25362 1.20248 0.89016 0.89215 0.91013 1.22348 1.08254 1.04531 0.98889 1.21885 0.94682 0.93085 0.90283 1.42025 1.43130 1.32664 1.03754 0.74286 1.17712 0.87385 0.88998 0.84913 1.19708 1.06118 1.28706 0.98402 0.89023 1.26897 0.93386 0.96951 0.99480 1.69333 1.06613 1.34903 1.34267 0.84963 0.79082 0.77147 0.77498 1.18662 1.17750 1.19033 1.20116 1.19945 1.07341 0.95954 0.92560 0.93137 0.91388 0.93215 0.95078 0.93582 0.90878 0.90699 0.93661 0.91933 0.95806 0.93069 0.85131 0.80442 0.88309 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.91 71.98 0.71 -3.06 16 2 C -0.11 -3.94 5.82 30.60 0.18 -3.77 16 3 C -0.10 -3.30 4.89 30.59 0.15 -3.15 16 4 C 0.08 3.09 2.19 44.99 0.10 3.19 16 5 H 0.03 1.18 5.32 -2.38 -0.01 1.17 16 6 C -0.11 -3.79 5.61 30.59 0.17 -3.62 16 7 C -0.14 -4.78 9.80 71.98 0.71 -4.08 16 8 N -0.68 -33.08 9.13 -314.60 -2.87 -35.96 16 9 C 0.27 13.56 6.64 42.30 0.28 13.84 16 10 C -0.31 -13.22 9.34 23.66 0.22 -13.00 16 11 C 0.13 4.98 11.15 83.09 0.93 5.90 16 12 N -0.60 -26.43 4.89 -188.19 -0.92 -27.35 16 13 H 0.42 17.15 6.33 -92.71 -0.59 16.57 16 14 C 0.32 16.24 6.37 38.88 0.25 16.48 16 15 C -0.50 -24.48 9.03 23.26 0.21 -24.27 16 16 H 0.09 4.55 7.91 -2.91 -0.02 4.53 16 17 C 0.05 2.17 5.17 85.39 0.44 2.62 16 18 N -0.82 -35.21 11.12 21.89 0.24 -34.97 16 19 Si 0.99 32.88 29.60 68.60 2.03 34.91 16 20 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 21 H -0.25 -7.75 7.11 99.48 0.71 -7.04 16 22 H -0.27 -8.58 7.11 99.48 0.71 -7.88 16 23 C -0.40 -22.00 9.83 23.41 0.23 -21.77 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.03 1.30 7.75 -2.39 -0.02 1.28 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.02 0.99 7.60 -2.39 -0.02 0.97 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.13 5.03 5.99 -2.91 -0.02 5.02 16 37 H 0.18 4.93 8.06 -2.91 -0.02 4.90 16 38 H 0.31 11.41 8.29 -92.71 -0.77 10.64 16 39 H 0.08 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -58.13 318.54 3.49 -54.64 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: 0.43 Total: 43.41 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 4.57 Total: -34.69 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -3.55 Total: -98.28 kcal Atomic # 14 Polarization: 32.88 SS G_CDS: 2.03 Total: 34.91 kcal Total: -58.13 3.49 -54.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390440879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.335 kcal (2) G-P(sol) polarization free energy of solvation -58.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds