Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99915 * 2 1 4 4 C 1.53005 * 109.46868 * 60.00178 * 3 2 1 5 5 C 1.52998 * 109.47387 * 300.00350 * 3 2 1 6 6 C 1.52996 * 109.46918 * 179.97438 * 3 2 1 7 7 N 1.46502 * 109.47189 * 60.00542 * 6 3 2 8 8 C 1.38849 * 120.00282 * 179.97438 * 7 6 3 9 9 C 1.39568 * 119.84270 * 359.72097 * 8 7 6 10 10 C 1.36338 * 120.16261 * 179.71757 * 9 8 7 11 11 C 1.40887 * 119.83567 * 0.55924 * 10 9 8 12 12 C 1.41138 * 120.15888 * 179.69958 * 11 10 9 13 13 H 1.07998 * 120.00076 * 204.63105 * 12 11 10 14 14 C 1.39867 * 119.99657 * 24.62602 * 12 11 10 15 15 N 1.30899 * 120.00270 * 17.95962 * 14 12 11 16 16 Si 1.86808 * 119.99673 * 197.95959 * 14 12 11 17 17 H 1.48496 * 109.47158 * 90.00096 * 16 14 12 18 18 H 1.48503 * 109.46676 * 210.00201 * 16 14 12 19 19 H 1.48497 * 109.46895 * 330.00066 * 16 14 12 20 20 C 1.40883 * 119.68869 * 359.71798 * 11 10 9 21 21 C 1.36342 * 119.83430 * 0.02562 * 20 11 10 22 22 H 1.09005 * 109.47219 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47251 * 299.99892 * 1 2 3 24 24 H 1.08999 * 109.47293 * 59.99869 * 1 2 3 25 25 H 1.00899 * 110.99855 * 123.95845 * 2 1 3 26 26 H 1.08998 * 109.46935 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.46970 * 299.99865 * 4 3 2 28 28 H 1.08997 * 109.47003 * 59.99641 * 4 3 2 29 29 H 1.09001 * 109.46551 * 299.99677 * 5 3 2 30 30 H 1.08999 * 109.47316 * 59.99606 * 5 3 2 31 31 H 1.08998 * 109.47171 * 180.02562 * 5 3 2 32 32 H 1.08993 * 109.47856 * 300.00049 * 6 3 2 33 33 H 1.09006 * 109.46831 * 179.97438 * 6 3 2 34 34 H 0.97005 * 119.99595 * 359.97438 * 7 6 3 35 35 H 1.08003 * 119.92109 * 359.97438 * 9 8 7 36 36 H 1.08000 * 120.08642 * 180.28061 * 10 9 8 37 37 H 0.97001 * 120.00134 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.08650 * 179.97438 * 20 11 10 39 39 H 1.08002 * 119.91459 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5048 2.1060 1.2493 5 6 1.5048 2.1061 -1.2492 6 6 3.5248 1.3306 0.0006 7 7 3.9951 0.6271 -1.1953 8 6 5.3564 0.4643 -1.4147 9 6 6.2741 0.9772 -0.4968 10 6 7.6122 0.8160 -0.7029 11 6 8.0680 0.1400 -1.8519 12 6 9.4518 -0.0251 -2.0752 13 1 9.8238 -0.1649 -3.0794 14 6 10.3412 -0.0076 -0.9959 15 7 9.8969 -0.1919 0.2215 16 14 12.1634 0.2787 -1.2919 17 1 12.4518 1.7342 -1.2324 18 1 12.9509 -0.4251 -0.2481 19 1 12.5357 -0.2454 -2.6305 20 6 7.1360 -0.3700 -2.7771 21 6 5.8008 -0.2060 -2.5554 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8306 -0.5262 0.7813 26 1 1.8958 3.1234 1.2496 27 1 0.4152 2.1350 1.2493 28 1 1.8543 1.5826 2.1392 29 1 1.8544 1.5828 -2.1391 30 1 0.4152 2.1352 -1.2492 31 1 1.8958 3.1235 -1.2494 32 1 3.8741 0.8074 0.8908 33 1 3.9154 2.3483 0.0002 34 1 3.3553 0.2751 -1.8339 35 1 5.9234 1.4995 0.3811 36 1 8.3211 1.2095 0.0106 37 1 10.5139 -0.1802 0.9699 38 1 7.4783 -0.8889 -3.6603 39 1 5.0852 -0.5961 -3.2641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390578368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = 20.560468 kcal Electronic energy + Delta-G solvation = -17834.777131 eV Core-core repulsion = 15162.677352 eV Total energy + Delta-G solvation = -2672.099778 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.86293 -37.46394 -34.52473 -32.80226 -31.13235 -29.37333 -28.62337 -27.49993 -26.27626 -24.76194 -23.53650 -21.02156 -19.97783 -19.08496 -17.12669 -16.39805 -15.81856 -15.31384 -14.93546 -14.55218 -14.02614 -13.76754 -13.46181 -13.05196 -12.79526 -12.54862 -12.40339 -12.27367 -11.93545 -11.88259 -11.61223 -11.42191 -11.27579 -10.99491 -10.97558 -10.77793 -10.51709 -10.38656 -9.61113 -9.20479 -9.14058 -8.48781 -8.40497 -7.40705 -6.56578 -6.26502 -3.95013 2.97803 3.17569 3.19798 3.22740 3.43404 4.07387 4.11028 4.47542 4.76246 4.83887 4.95709 5.12425 5.22309 5.33651 5.47800 5.57947 5.70948 5.79311 5.84278 5.88826 5.99437 6.04705 6.09337 6.27323 6.37220 6.41642 6.95660 7.02585 7.05349 7.28368 7.32068 7.44463 7.65822 7.78085 7.94974 8.23113 8.39400 8.61109 8.82980 8.94765 9.13760 9.24610 10.44746 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.047547 B = 0.004288 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.751100 B = 6528.160144 C = 6786.744343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.678 5.678 3 C 0.097 3.903 4 C -0.179 4.179 5 C -0.137 4.137 6 C 0.154 3.846 7 N -0.750 5.750 8 C 0.099 3.901 9 C -0.168 4.168 10 C -0.123 4.123 11 C 0.071 3.929 12 C -0.468 4.468 13 H 0.072 0.928 14 C 0.075 3.925 15 N -0.810 5.810 16 Si 0.902 3.098 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.265 1.265 20 C -0.184 4.184 21 C -0.162 4.162 22 H 0.063 0.937 23 H 0.022 0.978 24 H 0.066 0.934 25 H 0.344 0.656 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.390 0.610 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.275 0.725 38 H 0.090 0.910 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 3.486 2.213 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.309 5.309 3 C 0.006 3.994 4 C -0.239 4.239 5 C -0.194 4.194 6 C 0.027 3.973 7 N -0.386 5.386 8 C 0.002 3.998 9 C -0.190 4.190 10 C -0.143 4.143 11 C 0.068 3.932 12 C -0.500 4.500 13 H 0.090 0.910 14 C -0.140 4.140 15 N -0.438 5.438 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.189 1.189 20 C -0.205 4.205 21 C -0.184 4.184 22 H 0.082 0.918 23 H 0.041 0.959 24 H 0.084 0.916 25 H 0.162 0.838 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.224 0.776 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.238 3.475 1.930 14.782 hybrid contribution 0.424 0.186 0.795 0.920 sum -13.815 3.660 2.725 14.549 Atomic orbital electron populations 1.22279 0.88545 1.01524 1.00384 1.60499 1.07127 1.13082 1.50195 1.21211 0.95032 0.88280 0.94874 1.22484 1.01436 1.01687 0.98284 1.21837 1.00221 0.99858 0.97512 1.20964 0.90202 0.96391 0.89701 1.43760 1.03581 1.66067 1.25172 1.17388 0.82781 1.03305 0.96367 1.20078 0.93721 1.06357 0.98892 1.20920 0.93283 1.00398 0.99700 1.17475 0.92944 0.91079 0.91687 1.19364 0.91436 1.45207 0.93968 0.91029 1.25771 1.00780 0.92727 0.94706 1.69862 1.36938 1.37190 0.99779 0.86428 0.82737 0.79160 0.78962 1.19620 1.20654 1.18905 1.20546 0.92185 1.05956 1.01777 1.19798 0.95499 1.05702 0.97379 0.91802 0.95941 0.91557 0.83827 0.91746 0.92238 0.92491 0.91489 0.92943 0.92206 0.93872 0.93269 0.77557 0.89637 0.86521 0.91455 0.89171 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.91 60.06 0.60 0.80 16 2 N -0.68 -7.71 6.13 -107.18 -0.66 -8.37 16 3 C 0.10 1.13 0.63 -131.60 -0.08 1.05 16 4 C -0.18 -1.76 8.23 37.16 0.31 -1.46 16 5 C -0.14 -1.52 8.07 37.16 0.30 -1.22 16 6 C 0.15 2.32 3.93 -4.04 -0.02 2.30 16 7 N -0.75 -13.40 5.27 -58.50 -0.31 -13.70 16 8 C 0.10 2.22 6.67 -83.69 -0.56 1.66 16 9 C -0.17 -4.04 9.23 -39.77 -0.37 -4.41 16 10 C -0.12 -3.30 8.64 -39.26 -0.34 -3.64 16 11 C 0.07 1.97 5.57 -106.79 -0.60 1.37 16 12 C -0.47 -13.03 9.03 -37.87 -0.34 -13.37 16 13 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 14 C 0.07 1.97 5.13 -17.34 -0.09 1.88 16 15 N -0.81 -21.97 10.96 55.54 0.61 -21.36 16 16 Si 0.90 19.63 29.60 -169.99 -5.03 14.60 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 19 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 20 C -0.18 -4.70 9.74 -39.26 -0.38 -5.08 16 21 C -0.16 -3.75 9.82 -39.77 -0.39 -4.14 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.02 0.19 6.30 -51.93 -0.33 -0.14 16 24 H 0.07 0.60 6.30 -51.93 -0.33 0.27 16 25 H 0.34 3.91 8.81 -39.29 -0.35 3.57 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.53 6.40 -51.93 -0.33 0.19 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.83 6.86 -51.93 -0.36 0.47 16 30 H 0.05 0.51 6.40 -51.93 -0.33 0.17 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.69 7.94 -51.93 -0.41 0.28 16 33 H 0.05 0.77 7.91 -51.93 -0.41 0.36 16 34 H 0.39 6.61 7.15 -40.82 -0.29 6.31 16 35 H 0.09 1.88 6.68 -52.48 -0.35 1.53 16 36 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 37 H 0.27 6.82 8.30 -40.82 -0.34 6.48 16 38 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -28.44 309.69 -8.58 -37.01 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.90 Total: 11.41 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.96 Total: -24.26 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.36 Total: -43.43 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.44 -8.58 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390578368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.574 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds