Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99915 * 2 1 4 4 C 1.53005 * 109.46868 * 60.00178 * 3 2 1 5 5 C 1.52998 * 109.47387 * 300.00350 * 3 2 1 6 6 C 1.52996 * 109.46918 * 179.97438 * 3 2 1 7 7 N 1.46502 * 109.47189 * 60.00542 * 6 3 2 8 8 C 1.38849 * 120.00282 * 179.97438 * 7 6 3 9 9 C 1.39568 * 119.84270 * 359.72097 * 8 7 6 10 10 C 1.36338 * 120.16261 * 179.71757 * 9 8 7 11 11 C 1.40887 * 119.83567 * 0.55924 * 10 9 8 12 12 C 1.41138 * 120.15888 * 179.69958 * 11 10 9 13 13 H 1.07998 * 120.00076 * 204.63105 * 12 11 10 14 14 C 1.39867 * 119.99657 * 24.62602 * 12 11 10 15 15 N 1.30899 * 120.00270 * 17.95962 * 14 12 11 16 16 Si 1.86808 * 119.99673 * 197.95959 * 14 12 11 17 17 H 1.48496 * 109.47158 * 90.00096 * 16 14 12 18 18 H 1.48503 * 109.46676 * 210.00201 * 16 14 12 19 19 H 1.48497 * 109.46895 * 330.00066 * 16 14 12 20 20 C 1.40883 * 119.68869 * 359.71798 * 11 10 9 21 21 C 1.36342 * 119.83430 * 0.02562 * 20 11 10 22 22 H 1.09005 * 109.47219 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47251 * 299.99892 * 1 2 3 24 24 H 1.08999 * 109.47293 * 59.99869 * 1 2 3 25 25 H 1.00899 * 110.99855 * 123.95845 * 2 1 3 26 26 H 1.08998 * 109.46935 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.46970 * 299.99865 * 4 3 2 28 28 H 1.08997 * 109.47003 * 59.99641 * 4 3 2 29 29 H 1.09001 * 109.46551 * 299.99677 * 5 3 2 30 30 H 1.08999 * 109.47316 * 59.99606 * 5 3 2 31 31 H 1.08998 * 109.47171 * 180.02562 * 5 3 2 32 32 H 1.08993 * 109.47856 * 300.00049 * 6 3 2 33 33 H 1.09006 * 109.46831 * 179.97438 * 6 3 2 34 34 H 0.97005 * 119.99595 * 359.97438 * 7 6 3 35 35 H 1.08003 * 119.92109 * 359.97438 * 9 8 7 36 36 H 1.08000 * 120.08642 * 180.28061 * 10 9 8 37 37 H 0.97001 * 120.00134 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.08650 * 179.97438 * 20 11 10 39 39 H 1.08002 * 119.91459 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5048 2.1060 1.2493 5 6 1.5048 2.1061 -1.2492 6 6 3.5248 1.3306 0.0006 7 7 3.9951 0.6271 -1.1953 8 6 5.3564 0.4643 -1.4147 9 6 6.2741 0.9772 -0.4968 10 6 7.6122 0.8160 -0.7029 11 6 8.0680 0.1400 -1.8519 12 6 9.4518 -0.0251 -2.0752 13 1 9.8238 -0.1649 -3.0794 14 6 10.3412 -0.0076 -0.9959 15 7 9.8969 -0.1919 0.2215 16 14 12.1634 0.2787 -1.2919 17 1 12.4518 1.7342 -1.2324 18 1 12.9509 -0.4251 -0.2481 19 1 12.5357 -0.2454 -2.6305 20 6 7.1360 -0.3700 -2.7771 21 6 5.8008 -0.2060 -2.5554 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8306 -0.5262 0.7813 26 1 1.8958 3.1234 1.2496 27 1 0.4152 2.1350 1.2493 28 1 1.8543 1.5826 2.1392 29 1 1.8544 1.5828 -2.1391 30 1 0.4152 2.1352 -1.2492 31 1 1.8958 3.1235 -1.2494 32 1 3.8741 0.8074 0.8908 33 1 3.9154 2.3483 0.0002 34 1 3.3553 0.2751 -1.8339 35 1 5.9234 1.4995 0.3811 36 1 8.3211 1.2095 0.0106 37 1 10.5139 -0.1802 0.9699 38 1 7.4783 -0.8889 -3.6603 39 1 5.0852 -0.5961 -3.2641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390578368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = 2.866529 kcal Electronic energy + Delta-G solvation = -17835.544397 eV Core-core repulsion = 15162.677352 eV Total energy + Delta-G solvation = -2672.867045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.12849 -39.06014 -36.21580 -34.52483 -32.21708 -31.31413 -30.34954 -28.36535 -27.58260 -25.99227 -25.10459 -22.89254 -21.78381 -20.10171 -19.12207 -17.87965 -17.08683 -16.79280 -16.28555 -15.89033 -15.48608 -15.12482 -14.67102 -14.41359 -14.33394 -13.88813 -13.78304 -13.67343 -13.46199 -13.06308 -12.94299 -12.73861 -12.70597 -12.53510 -12.28107 -12.11841 -12.06805 -11.59662 -11.51298 -11.13992 -11.03246 -10.24090 -9.37336 -9.30535 -8.52053 -8.08751 -5.96868 1.13759 1.21668 1.40966 1.53690 1.61449 2.29177 2.86649 2.96127 3.32173 3.77970 3.88143 4.01551 4.17969 4.47059 4.51122 4.54464 4.59716 4.67235 4.76481 4.78952 4.89221 4.95478 5.03731 5.05260 5.06559 5.18734 5.24459 5.31102 5.37857 5.49549 5.72736 5.84036 6.00812 6.13923 6.21920 6.43307 6.45828 6.72277 6.93275 7.11465 7.21441 7.41721 8.51273 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.047547 B = 0.004288 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.751100 B = 6528.160144 C = 6786.744343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.692 5.692 3 C 0.106 3.894 4 C -0.175 4.175 5 C -0.135 4.135 6 C 0.149 3.851 7 N -0.737 5.737 8 C 0.118 3.882 9 C -0.178 4.178 10 C -0.142 4.142 11 C 0.032 3.968 12 C -0.508 4.508 13 H 0.067 0.933 14 C 0.032 3.968 15 N -0.844 5.844 16 Si 0.977 3.023 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.261 1.261 20 C -0.193 4.193 21 C -0.169 4.169 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.068 0.932 25 H 0.342 0.658 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.398 0.602 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.281 0.719 38 H 0.095 0.905 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.014 3.854 2.313 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.323 5.323 3 C 0.014 3.986 4 C -0.234 4.234 5 C -0.193 4.193 6 C 0.024 3.976 7 N -0.372 5.372 8 C 0.018 3.982 9 C -0.200 4.200 10 C -0.162 4.162 11 C 0.029 3.971 12 C -0.539 4.539 13 H 0.085 0.915 14 C -0.179 4.179 15 N -0.472 5.472 16 Si 0.798 3.202 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.185 1.185 20 C -0.213 4.213 21 C -0.191 4.191 22 H 0.088 0.912 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.160 0.840 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.234 0.766 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.911 3.846 2.029 16.495 hybrid contribution 0.706 0.063 0.770 1.046 sum -15.205 3.909 2.799 15.947 Atomic orbital electron populations 1.22312 0.86976 1.02233 1.00994 1.60498 1.08648 1.12767 1.50372 1.21081 0.92325 0.89026 0.96142 1.22432 1.02352 1.01484 0.97137 1.21829 1.01438 0.99548 0.96471 1.21141 0.93005 0.95535 0.87956 1.43799 1.01837 1.65369 1.26149 1.17498 0.84603 1.00941 0.95158 1.20216 0.93023 1.06825 0.99980 1.20852 0.94246 1.01460 0.99622 1.17797 0.93719 0.92641 0.92932 1.19592 0.92396 1.47585 0.94338 0.91516 1.26596 1.05428 0.91819 0.94107 1.69925 1.38772 1.37866 1.00646 0.85296 0.76632 0.79209 0.79036 1.18966 1.19541 1.18500 1.20751 0.93115 1.05837 1.01627 1.20077 0.95199 1.05623 0.98224 0.91166 0.94835 0.91280 0.83988 0.91473 0.90713 0.92489 0.92839 0.91105 0.92110 0.94643 0.93532 0.76589 0.87965 0.88415 0.90844 0.88641 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.91 127.69 1.27 1.63 16 2 N -0.69 -14.02 6.13 -493.00 -3.02 -17.04 16 3 C 0.11 2.19 0.63 3.53 0.00 2.19 16 4 C -0.17 -2.94 8.23 71.98 0.59 -2.35 16 5 C -0.14 -2.65 8.07 71.98 0.58 -2.07 16 6 C 0.15 4.24 3.93 86.38 0.34 4.58 16 7 N -0.74 -24.99 5.27 -339.00 -1.79 -26.78 16 8 C 0.12 5.17 6.67 38.67 0.26 5.43 16 9 C -0.18 -8.58 9.23 22.15 0.20 -8.38 16 10 C -0.14 -7.85 8.64 22.48 0.19 -7.66 16 11 C 0.03 1.83 5.57 -21.27 -0.12 1.71 16 12 C -0.51 -29.25 9.03 23.38 0.21 -29.04 16 13 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 14 C 0.03 1.72 5.13 85.23 0.44 2.16 16 15 N -0.84 -47.06 10.96 21.82 0.24 -46.82 16 16 Si 0.98 40.94 29.60 68.60 2.03 42.97 16 17 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 C -0.19 -9.98 9.74 22.48 0.22 -9.76 16 21 C -0.17 -7.68 9.82 22.15 0.22 -7.47 16 22 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.03 0.45 6.30 -2.39 -0.02 0.43 16 24 H 0.07 1.02 6.30 -2.39 -0.02 1.01 16 25 H 0.34 7.07 8.81 -89.69 -0.79 6.28 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.06 6.40 -2.39 -0.02 1.04 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.19 6.86 -2.39 -0.02 1.18 16 30 H 0.07 1.14 6.40 -2.39 -0.02 1.12 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.09 7.94 -2.39 -0.02 1.07 16 33 H 0.05 1.38 7.91 -2.38 -0.02 1.36 16 34 H 0.40 12.54 7.15 -92.70 -0.66 11.88 16 35 H 0.10 4.47 6.68 -2.91 -0.02 4.45 16 36 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 37 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 38 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.23 309.69 1.46 -60.76 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -0.40 Total: 35.91 kcal Atomic # 6 Polarization: -53.42 SS G_CDS: 4.40 Total: -49.01 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -4.57 Total: -90.63 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -62.23 1.46 -60.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390578368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.629 kcal (2) G-P(sol) polarization free energy of solvation -62.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds