Wall clock time and date at job start Mon Mar 30 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 C 1.53001 * 109.47372 * 60.00203 * 3 2 1 5 5 C 1.53000 * 109.47213 * 299.99742 * 3 2 1 6 6 C 1.52996 * 109.46833 * 180.02562 * 3 2 1 7 7 N 1.46509 * 109.47255 * 179.97438 * 6 3 2 8 8 C 1.39085 * 120.00124 * 179.97438 * 7 6 3 9 9 C 1.38739 * 119.65550 * 359.97438 * 8 7 6 10 10 C 1.40784 * 118.66622 * 180.25011 * 9 8 7 11 11 C 1.41549 * 120.99282 * 179.72426 * 10 9 8 12 12 H 1.07998 * 119.99898 * 23.26873 * 11 10 9 13 13 C 1.40029 * 119.99977 * 203.25842 * 11 10 9 14 14 N 1.30748 * 119.99797 * 17.06957 * 13 11 10 15 15 Si 1.86799 * 120.00245 * 197.06076 * 13 11 10 16 16 H 1.48502 * 109.47074 * 90.00154 * 15 13 11 17 17 H 1.48495 * 109.47498 * 210.00626 * 15 13 11 18 18 H 1.48507 * 109.46890 * 330.00347 * 15 13 11 19 19 C 1.41194 * 118.00981 * 359.51270 * 10 9 8 20 20 C 1.36550 * 119.14739 * 0.46774 * 19 10 9 21 21 N 1.32091 * 121.26940 * 359.77188 * 20 19 10 22 22 H 1.09001 * 109.47388 * 60.00211 * 1 2 3 23 23 H 1.09004 * 109.47380 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47734 * 299.99880 * 1 2 3 25 25 H 1.08993 * 109.47220 * 239.99432 * 2 1 3 26 26 H 1.09006 * 109.46777 * 119.99458 * 2 1 3 27 27 H 1.09004 * 109.47055 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46626 * 299.99720 * 4 3 2 29 29 H 1.08997 * 109.47553 * 59.99630 * 4 3 2 30 30 H 1.09000 * 109.47147 * 300.00497 * 5 3 2 31 31 H 1.09000 * 109.46684 * 60.00231 * 5 3 2 32 32 H 1.08994 * 109.47551 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47734 * 60.00120 * 6 3 2 34 34 H 1.09001 * 109.47388 * 299.99789 * 6 3 2 35 35 H 0.97001 * 119.99519 * 359.97438 * 7 6 3 36 36 H 1.07993 * 120.66937 * 359.97438 * 9 8 7 37 37 H 0.96994 * 119.99925 * 180.02562 * 14 13 11 38 38 H 1.08000 * 120.42172 * 180.25861 * 19 10 9 39 39 H 1.08001 * 119.36536 * 179.78851 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2493 5 6 1.5299 2.1637 -1.2493 6 6 3.5699 1.4425 -0.0006 7 7 4.0582 2.8238 -0.0013 8 6 5.4257 3.0780 -0.0014 9 6 6.3209 2.0180 -0.0004 10 6 7.7004 2.2991 0.0049 11 6 8.6568 1.2557 0.0120 12 1 8.3899 0.2760 -0.3559 13 6 9.9491 1.4938 0.4959 14 7 10.1865 2.5447 1.2366 15 14 11.3338 0.3099 0.0833 16 1 11.9942 0.7398 -1.1755 17 1 12.3272 0.3059 1.1870 18 1 10.7809 -1.0575 -0.0899 19 6 8.1012 3.6530 -0.0017 20 6 7.1465 4.6293 -0.0031 21 7 5.8599 4.3301 -0.0029 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.8929 3.1916 1.2490 28 1 0.4399 2.1638 1.2492 29 1 1.8932 1.6500 2.1393 30 1 1.8932 1.6499 -2.1392 31 1 0.4399 2.1637 -1.2492 32 1 1.8935 3.1912 -1.2496 33 1 3.9329 0.9289 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 3.4279 3.5611 -0.0016 36 1 5.9667 0.9978 0.0009 37 1 11.0817 2.7099 1.5715 38 1 9.1495 3.9129 -0.0022 39 1 7.4492 5.6660 -0.0047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390605125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:09 Heat of formation + Delta-G solvation = 6.404971 kcal Electronic energy + Delta-G solvation = -17909.369272 eV Core-core repulsion = 15236.655665 eV Total energy + Delta-G solvation = -2672.713607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.88544 -37.82528 -34.48065 -33.46165 -30.56837 -30.22883 -27.89012 -27.24478 -26.11306 -25.76015 -23.12302 -21.24921 -20.60044 -18.46212 -17.62088 -16.11106 -15.16763 -15.03474 -14.92372 -14.34256 -14.09468 -14.06717 -13.60416 -13.11494 -12.81728 -12.71669 -12.34388 -12.14886 -11.92047 -11.86519 -11.66252 -11.33475 -11.16266 -11.12053 -10.83753 -10.51640 -10.50012 -10.33218 -10.23372 -9.75284 -9.37737 -8.84533 -7.90952 -7.84828 -6.79551 -6.37739 -4.51304 2.83201 3.05779 3.09449 3.12545 3.40718 3.90556 4.14358 4.75041 4.79910 4.84442 4.87046 5.24862 5.37106 5.44779 5.62538 5.72411 5.83237 5.84551 5.89861 5.92190 5.99623 6.05878 6.11721 6.14832 6.21500 6.24194 6.47030 6.47453 6.85083 6.96026 7.02017 7.06773 7.32916 7.61686 7.89120 8.10578 8.19107 8.50222 8.77747 8.88523 8.96726 9.84375 10.15260 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.004936 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.503097 B = 5670.878131 C = 6336.072044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.075 4.075 4 C -0.142 4.142 5 C -0.141 4.141 6 C 0.152 3.848 7 N -0.741 5.741 8 C 0.398 3.602 9 C -0.336 4.336 10 C 0.156 3.844 11 C -0.458 4.458 12 H 0.079 0.921 13 C 0.079 3.921 14 N -0.785 5.785 15 Si 0.910 3.090 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.247 4.247 20 C 0.116 3.884 21 N -0.626 5.626 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.388 0.612 36 H 0.096 0.904 37 H 0.281 0.719 38 H 0.122 0.878 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 -3.678 -1.574 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.075 4.075 4 C -0.199 4.199 5 C -0.199 4.199 6 C 0.026 3.974 7 N -0.379 5.379 8 C 0.167 3.833 9 C -0.363 4.363 10 C 0.148 3.852 11 C -0.489 4.489 12 H 0.097 0.903 13 C -0.140 4.140 14 N -0.410 5.410 15 Si 0.734 3.266 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.271 4.271 20 C -0.034 4.034 21 N -0.349 5.349 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.223 0.777 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.377 -3.063 -1.430 12.830 hybrid contribution 1.195 -0.917 -0.047 1.507 sum -11.181 -3.980 -1.477 11.960 Atomic orbital electron populations 1.21869 0.95941 1.01261 1.02002 1.21500 0.95819 0.95385 1.02272 1.20776 0.94841 0.95790 0.96113 1.21902 1.00417 1.00643 0.96927 1.21901 1.00429 1.00632 0.96907 1.21105 0.91386 0.84185 1.00732 1.44157 1.03316 1.05749 1.84665 1.17958 0.83711 0.89801 0.91819 1.21124 0.93361 0.96400 1.25367 1.17606 0.90771 0.92759 0.84105 1.19585 0.94677 0.97756 1.36847 0.90329 1.25958 0.99974 0.95732 0.92350 1.69812 1.22949 1.25506 1.22708 0.86288 0.80032 0.81200 0.79055 1.19176 1.20247 1.18562 1.21766 0.99942 0.93265 1.12150 1.21343 0.87722 0.97735 0.96590 1.66747 1.18353 1.19662 1.30159 0.92496 0.93082 0.92489 0.91786 0.91760 0.92405 0.92617 0.92588 0.92629 0.92613 0.92409 0.93003 0.92929 0.77699 0.88590 0.90778 0.85998 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.21 37.16 0.34 -1.01 16 2 C -0.11 -1.16 4.99 -26.73 -0.13 -1.30 16 3 C -0.07 -0.90 0.56 -154.51 -0.09 -0.99 16 4 C -0.14 -1.65 7.95 37.16 0.30 -1.35 16 5 C -0.14 -1.62 7.95 37.16 0.30 -1.33 16 6 C 0.15 2.41 3.78 -4.04 -0.02 2.40 16 7 N -0.74 -14.12 5.13 -60.47 -0.31 -14.43 16 8 C 0.40 9.57 7.65 -154.97 -1.19 8.39 16 9 C -0.34 -8.59 9.12 -38.43 -0.35 -8.94 16 10 C 0.16 4.29 5.61 -106.55 -0.60 3.69 16 11 C -0.46 -12.30 9.12 -37.65 -0.34 -12.64 16 12 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 13 C 0.08 2.00 5.20 -17.34 -0.09 1.91 16 14 N -0.78 -20.32 10.91 55.55 0.61 -19.71 16 15 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 16 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 18 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 19 C -0.25 -6.62 8.75 -39.07 -0.34 -6.96 16 20 C 0.12 2.90 11.10 -18.05 -0.20 2.70 16 21 N -0.63 -15.72 10.37 -12.82 -0.13 -15.86 16 22 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.73 6.86 -51.93 -0.36 0.37 16 28 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 32 H 0.06 0.72 6.86 -51.93 -0.36 0.36 16 33 H 0.05 0.86 7.93 -51.93 -0.41 0.45 16 34 H 0.05 0.89 7.93 -51.93 -0.41 0.48 16 35 H 0.39 6.89 6.29 -40.82 -0.26 6.64 16 36 H 0.10 2.32 6.71 -52.49 -0.35 1.97 16 37 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 38 H 0.12 3.32 6.18 -52.49 -0.32 2.99 16 39 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 307.73 15.07 4.64 4.64 Total: -1.00 -28.74 307.73 -8.53 -37.27 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.89 Total: 9.98 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.41 Total: -15.44 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.16 Total: -50.00 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.74 -8.53 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390605125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.673 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds