Wall clock time and date at job start Mon Mar 30 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 C 1.53001 * 109.47372 * 60.00203 * 3 2 1 5 5 C 1.53000 * 109.47213 * 299.99742 * 3 2 1 6 6 C 1.52996 * 109.46833 * 180.02562 * 3 2 1 7 7 N 1.46509 * 109.47255 * 179.97438 * 6 3 2 8 8 C 1.39085 * 120.00124 * 179.97438 * 7 6 3 9 9 C 1.38739 * 119.65550 * 359.97438 * 8 7 6 10 10 C 1.40784 * 118.66622 * 180.25011 * 9 8 7 11 11 C 1.41549 * 120.99282 * 179.72426 * 10 9 8 12 12 H 1.07998 * 119.99898 * 23.26873 * 11 10 9 13 13 C 1.40029 * 119.99977 * 203.25842 * 11 10 9 14 14 N 1.30748 * 119.99797 * 17.06957 * 13 11 10 15 15 Si 1.86799 * 120.00245 * 197.06076 * 13 11 10 16 16 H 1.48502 * 109.47074 * 90.00154 * 15 13 11 17 17 H 1.48495 * 109.47498 * 210.00626 * 15 13 11 18 18 H 1.48507 * 109.46890 * 330.00347 * 15 13 11 19 19 C 1.41194 * 118.00981 * 359.51270 * 10 9 8 20 20 C 1.36550 * 119.14739 * 0.46774 * 19 10 9 21 21 N 1.32091 * 121.26940 * 359.77188 * 20 19 10 22 22 H 1.09001 * 109.47388 * 60.00211 * 1 2 3 23 23 H 1.09004 * 109.47380 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47734 * 299.99880 * 1 2 3 25 25 H 1.08993 * 109.47220 * 239.99432 * 2 1 3 26 26 H 1.09006 * 109.46777 * 119.99458 * 2 1 3 27 27 H 1.09004 * 109.47055 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46626 * 299.99720 * 4 3 2 29 29 H 1.08997 * 109.47553 * 59.99630 * 4 3 2 30 30 H 1.09000 * 109.47147 * 300.00497 * 5 3 2 31 31 H 1.09000 * 109.46684 * 60.00231 * 5 3 2 32 32 H 1.08994 * 109.47551 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47734 * 60.00120 * 6 3 2 34 34 H 1.09001 * 109.47388 * 299.99789 * 6 3 2 35 35 H 0.97001 * 119.99519 * 359.97438 * 7 6 3 36 36 H 1.07993 * 120.66937 * 359.97438 * 9 8 7 37 37 H 0.96994 * 119.99925 * 180.02562 * 14 13 11 38 38 H 1.08000 * 120.42172 * 180.25861 * 19 10 9 39 39 H 1.08001 * 119.36536 * 179.78851 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2493 5 6 1.5299 2.1637 -1.2493 6 6 3.5699 1.4425 -0.0006 7 7 4.0582 2.8238 -0.0013 8 6 5.4257 3.0780 -0.0014 9 6 6.3209 2.0180 -0.0004 10 6 7.7004 2.2991 0.0049 11 6 8.6568 1.2557 0.0120 12 1 8.3899 0.2760 -0.3559 13 6 9.9491 1.4938 0.4959 14 7 10.1865 2.5447 1.2366 15 14 11.3338 0.3099 0.0833 16 1 11.9942 0.7398 -1.1755 17 1 12.3272 0.3059 1.1870 18 1 10.7809 -1.0575 -0.0899 19 6 8.1012 3.6530 -0.0017 20 6 7.1465 4.6293 -0.0031 21 7 5.8599 4.3301 -0.0029 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.8929 3.1916 1.2490 28 1 0.4399 2.1638 1.2492 29 1 1.8932 1.6500 2.1393 30 1 1.8932 1.6499 -2.1392 31 1 0.4399 2.1637 -1.2492 32 1 1.8935 3.1912 -1.2496 33 1 3.9329 0.9289 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 3.4279 3.5611 -0.0016 36 1 5.9667 0.9978 0.0009 37 1 11.0817 2.7099 1.5715 38 1 9.1495 3.9129 -0.0022 39 1 7.4492 5.6660 -0.0047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390605125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:09 Heat of formation + Delta-G solvation = -8.894238 kcal Electronic energy + Delta-G solvation = -17910.032695 eV Core-core repulsion = 15236.655665 eV Total energy + Delta-G solvation = -2673.377030 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48867 -39.24664 -36.25454 -35.13147 -32.54941 -31.34045 -29.49364 -28.18302 -27.84395 -27.31967 -24.28587 -23.14637 -22.37927 -19.63387 -19.36148 -17.84389 -16.93891 -16.63954 -15.98178 -15.92715 -15.60637 -15.23579 -15.18517 -14.57928 -14.28490 -14.23471 -14.16081 -13.25595 -13.02363 -13.00594 -12.91956 -12.73823 -12.71949 -12.66502 -12.02340 -11.97042 -11.75064 -11.46994 -11.39816 -11.32873 -11.24423 -10.61370 -9.93005 -9.84027 -8.70321 -8.20922 -6.55428 0.97703 1.19600 1.38773 1.52679 1.61125 2.19189 2.58289 2.80690 3.74787 3.81010 3.89560 3.91822 4.24159 4.42068 4.42477 4.63442 4.72469 4.74941 4.78304 4.88248 4.92367 4.99776 5.05048 5.05551 5.08645 5.14581 5.16600 5.18930 5.26780 5.31536 5.34360 5.53400 5.60694 5.62947 5.91543 6.12523 6.41052 6.55977 6.86853 6.91590 7.07856 7.89272 8.27189 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.004936 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.503097 B = 5670.878131 C = 6336.072044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.066 4.066 4 C -0.140 4.140 5 C -0.139 4.139 6 C 0.149 3.851 7 N -0.727 5.727 8 C 0.397 3.603 9 C -0.358 4.358 10 C 0.128 3.872 11 C -0.490 4.490 12 H 0.078 0.922 13 C 0.039 3.961 14 N -0.812 5.812 15 Si 0.989 3.011 16 H -0.260 1.260 17 H -0.265 1.265 18 H -0.258 1.258 19 C -0.272 4.272 20 C 0.116 3.884 21 N -0.636 5.636 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.397 0.603 36 H 0.100 0.900 37 H 0.292 0.708 38 H 0.112 0.888 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 -4.437 -1.743 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.066 4.066 4 C -0.197 4.197 5 C -0.196 4.196 6 C 0.024 3.976 7 N -0.363 5.363 8 C 0.165 3.835 9 C -0.385 4.385 10 C 0.120 3.880 11 C -0.520 4.520 12 H 0.096 0.904 13 C -0.178 4.178 14 N -0.437 5.437 15 Si 0.808 3.192 16 H -0.185 1.185 17 H -0.189 1.189 18 H -0.181 1.181 19 C -0.297 4.297 20 C -0.033 4.033 21 N -0.360 5.360 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.233 0.767 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.316 -3.823 -1.595 13.945 hybrid contribution 1.404 -0.658 0.035 1.551 sum -11.912 -4.481 -1.560 12.822 Atomic orbital electron populations 1.21844 0.94134 1.02185 1.02513 1.21498 0.97308 0.93855 1.02204 1.20728 0.91640 0.97365 0.96865 1.21896 1.01924 0.99600 0.96288 1.21890 1.01908 0.99612 0.96233 1.21297 0.94368 0.82185 0.99765 1.44240 1.01549 1.07485 1.83069 1.18235 0.85552 0.89261 0.90460 1.21224 0.93266 0.97111 1.26855 1.18017 0.91910 0.93500 0.84618 1.19867 0.96171 0.97794 1.38211 0.90409 1.26873 1.01930 0.97619 0.91387 1.69851 1.24211 1.26925 1.22727 0.85116 0.76347 0.78552 0.79153 1.18457 1.18889 1.18122 1.21740 0.99801 0.93639 1.14497 1.21751 0.87631 0.98793 0.95165 1.66903 1.18221 1.19957 1.30925 0.91887 0.92071 0.91992 0.91837 0.92000 0.93623 0.90229 0.93154 0.92970 0.90262 0.93589 0.93745 0.94058 0.76717 0.88199 0.89720 0.87017 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.21 71.98 0.66 -1.53 16 2 C -0.11 -2.10 4.99 30.59 0.15 -1.95 16 3 C -0.07 -1.49 0.56 -52.18 -0.03 -1.51 16 4 C -0.14 -3.01 7.95 71.98 0.57 -2.44 16 5 C -0.14 -2.93 7.95 71.98 0.57 -2.36 16 6 C 0.15 4.71 3.78 86.38 0.33 5.04 16 7 N -0.73 -27.63 5.13 -345.23 -1.77 -29.40 16 8 C 0.40 19.34 7.65 132.90 1.02 20.36 16 9 C -0.36 -18.82 9.12 23.01 0.21 -18.61 16 10 C 0.13 7.24 5.61 -21.11 -0.12 7.13 16 11 C -0.49 -26.99 9.12 23.52 0.21 -26.77 16 12 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 13 C 0.04 1.98 5.20 85.29 0.44 2.42 16 14 N -0.81 -42.47 10.91 21.84 0.24 -42.23 16 15 Si 0.99 37.79 29.59 68.60 2.03 39.82 16 16 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 17 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 19 C -0.27 -14.99 8.75 22.60 0.20 -14.79 16 20 C 0.12 5.90 11.10 84.26 0.94 6.83 16 21 N -0.64 -32.05 10.37 -194.48 -2.02 -34.07 16 22 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 23 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.04 1.09 6.86 -2.39 -0.02 1.07 16 28 H 0.08 1.35 6.43 -2.39 -0.02 1.33 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.31 6.43 -2.39 -0.02 1.30 16 32 H 0.05 1.07 6.86 -2.39 -0.02 1.06 16 33 H 0.04 1.48 7.93 -2.39 -0.02 1.47 16 34 H 0.04 1.41 7.93 -2.39 -0.02 1.39 16 35 H 0.40 13.85 6.29 -92.71 -0.58 13.27 16 36 H 0.10 5.01 6.71 -2.91 -0.02 4.99 16 37 H 0.29 13.62 8.29 -92.71 -0.77 12.85 16 38 H 0.11 6.27 6.18 -2.91 -0.02 6.26 16 39 H 0.14 6.30 8.06 -2.91 -0.02 6.27 16 Total: -1.00 -62.34 307.73 4.09 -58.24 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.46 Total: 35.84 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 5.16 Total: -28.20 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -3.55 Total: -105.70 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -62.34 4.09 -58.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390605125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.349 kcal (2) G-P(sol) polarization free energy of solvation -62.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds