Wall clock time and date at job start Mon Mar 30 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47115 * 2 1 4 4 C 1.53004 * 109.47135 * 301.62336 * 3 2 1 5 5 C 1.53003 * 109.47124 * 294.64417 * 4 3 2 6 6 C 1.53000 * 109.47520 * 61.62367 * 3 2 1 7 7 N 1.46507 * 109.46828 * 65.00126 * 6 3 2 8 8 C 1.38814 * 119.99691 * 180.02562 * 7 6 3 9 9 C 1.39800 * 119.58667 * 359.97438 * 8 7 6 10 10 C 1.38597 * 119.49117 * 180.02562 * 9 8 7 11 11 C 1.38392 * 118.68104 * 0.02562 * 10 9 8 12 12 C 1.40558 * 119.14722 * 359.97438 * 11 10 9 13 13 C 1.41321 * 119.77985 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99932 * 6.25717 * 13 12 11 15 15 C 1.40026 * 119.99625 * 186.25415 * 13 12 11 16 16 N 1.30743 * 119.99809 * 182.62323 * 15 13 12 17 17 Si 1.86799 * 120.00156 * 2.34878 * 15 13 12 18 18 H 1.48491 * 109.47018 * 180.27342 * 17 15 13 19 19 H 1.48502 * 109.47222 * 300.27598 * 17 15 13 20 20 H 1.48504 * 109.46854 * 60.27178 * 17 15 13 21 21 N 1.31958 * 119.58385 * 180.29730 * 8 7 6 22 22 H 1.08998 * 109.47144 * 180.88063 * 1 2 3 23 23 H 1.08995 * 109.47304 * 300.87772 * 1 2 3 24 24 H 1.09004 * 109.46834 * 60.88003 * 1 2 3 25 25 H 1.09000 * 109.46993 * 239.99468 * 2 1 3 26 26 H 1.09003 * 109.46960 * 119.99505 * 2 1 3 27 27 H 1.09002 * 109.46864 * 181.62521 * 3 2 1 28 28 H 1.08998 * 109.47023 * 54.64096 * 4 3 2 29 29 H 1.08998 * 109.47209 * 174.64191 * 4 3 2 30 30 H 1.09002 * 109.46882 * 65.15488 * 5 4 3 31 31 H 1.08993 * 109.47070 * 185.15741 * 5 4 3 32 32 H 1.09000 * 109.46900 * 305.15756 * 5 4 3 33 33 H 1.08993 * 109.47245 * 305.00208 * 6 3 2 34 34 H 1.09001 * 109.47164 * 184.99422 * 6 3 2 35 35 H 0.96999 * 120.00063 * 359.97438 * 7 6 3 36 36 H 1.07999 * 120.25074 * 0.04909 * 9 8 7 37 37 H 1.08000 * 120.65735 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.42198 * 180.02562 * 11 10 9 39 39 H 0.97001 * 120.00004 * 354.62942 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4969 2.1754 -1.2283 5 6 2.0803 1.5480 -2.4960 6 6 1.5637 2.1519 1.2691 7 7 2.1795 1.5231 2.4404 8 6 1.8952 1.9985 3.7132 9 6 1.0205 3.0781 3.8674 10 6 0.7385 3.5516 5.1391 11 6 1.3367 2.9362 6.2247 12 6 2.2073 1.8549 6.0047 13 6 2.8251 1.2163 7.1037 14 1 2.5517 1.4914 8.1116 15 6 3.7917 0.2269 6.8856 16 7 4.3260 -0.4000 7.9010 17 14 4.3121 -0.2028 5.1438 18 1 5.3358 -1.2776 5.1840 19 1 3.1310 -0.6726 4.3759 20 1 4.8830 1.0004 4.4868 21 7 2.4590 1.4299 4.7621 22 1 -0.3633 -1.0275 0.0158 23 1 -0.3633 0.5274 0.8820 24 1 -0.3633 0.5001 -0.8978 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.1296 1.4425 -0.0291 28 1 0.4102 2.0934 -1.2494 29 1 1.7810 3.2266 -1.1793 30 1 1.7213 0.5233 -2.5925 31 1 1.7667 2.1262 -3.3650 32 1 3.1685 1.5474 -2.4334 33 1 0.4790 2.0744 1.3434 34 1 1.8510 3.2025 1.2277 35 1 2.7853 0.7741 2.3265 36 1 0.5677 3.5394 3.0021 37 1 0.0658 4.3847 5.2799 38 1 1.1366 3.2819 7.2281 39 1 4.1115 -0.1272 8.8068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390625629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:12 Heat of formation + Delta-G solvation = -4.213736 kcal Electronic energy + Delta-G solvation = -18153.073719 eV Core-core repulsion = 15479.899650 eV Total energy + Delta-G solvation = -2673.174068 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.97089 -37.83243 -34.59685 -33.30129 -31.26743 -31.05819 -29.60098 -27.36195 -25.29682 -24.25546 -23.14986 -21.78056 -20.26814 -19.09366 -18.22312 -16.64677 -15.90001 -15.45049 -14.98608 -14.55901 -14.11150 -13.90740 -13.54840 -13.16738 -13.05357 -12.89305 -12.46948 -12.22443 -12.12385 -11.99368 -11.73643 -11.52664 -11.21358 -10.73281 -10.66195 -10.52228 -10.42383 -10.34952 -10.19397 -9.52624 -9.47878 -8.92471 -8.41079 -7.61288 -7.14868 -6.80769 -4.71922 2.72818 2.88001 3.62603 3.73553 3.89204 4.10797 4.50086 4.72904 4.73677 4.77617 4.84243 5.15707 5.25446 5.34408 5.50398 5.59815 5.64613 5.67550 5.72764 5.80731 5.88622 5.91209 5.95446 6.04020 6.13027 6.22578 6.30104 6.33425 6.45819 6.55150 6.67046 6.69265 7.31229 7.49615 7.53182 7.66414 7.95128 8.07959 8.35847 8.53501 8.79592 9.65576 10.07464 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025871 B = 0.006373 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.019210 B = 4392.683399 C = 5092.551616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.119 4.119 5 C -0.151 4.151 6 C 0.140 3.860 7 N -0.739 5.739 8 C 0.442 3.558 9 C -0.366 4.366 10 C -0.017 4.017 11 C -0.308 4.308 12 C 0.287 3.713 13 C -0.477 4.477 14 H 0.081 0.919 15 C 0.044 3.956 16 N -0.809 5.809 17 Si 1.160 2.840 18 H -0.338 1.338 19 H -0.283 1.283 20 H -0.295 1.295 21 N -0.621 5.621 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.394 0.606 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 2.599 -16.450 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.120 4.120 4 C -0.156 4.156 5 C -0.209 4.209 6 C 0.015 3.985 7 N -0.375 5.375 8 C 0.205 3.795 9 C -0.392 4.392 10 C -0.041 4.041 11 C -0.331 4.331 12 C 0.163 3.837 13 C -0.509 4.509 14 H 0.099 0.901 15 C -0.176 4.176 16 N -0.431 5.431 17 Si 0.997 3.003 18 H -0.272 1.272 19 H -0.211 1.211 20 H -0.223 1.223 21 N -0.350 5.350 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.228 0.772 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.487 1.062 -17.352 17.731 hybrid contribution -1.434 1.621 1.302 2.526 sum -4.921 2.683 -16.050 17.000 Atomic orbital electron populations 1.21877 0.95921 1.01491 1.01985 1.21551 0.96374 0.95923 1.02000 1.21439 1.00792 0.95590 0.94155 1.21540 1.00992 0.99384 0.93726 1.21786 1.00988 1.00910 0.97168 1.21266 0.97493 0.96061 0.83674 1.44306 1.52736 1.38226 1.02229 1.18094 0.88666 0.88256 0.84503 1.20469 1.14546 1.07115 0.97023 1.20706 0.94934 0.95891 0.92548 1.21386 1.09726 1.04409 0.97541 1.18271 0.88403 0.88443 0.88572 1.20749 1.18557 1.18038 0.93564 0.90088 1.27806 0.91368 0.90540 1.07926 1.70654 1.37084 1.34106 1.01296 0.81701 0.73844 0.74226 0.70527 1.27231 1.21068 1.22342 1.65936 1.34591 1.35568 0.98932 0.93105 0.92060 0.92654 0.91930 0.91616 0.90657 0.91315 0.91900 0.92539 0.92976 0.92763 0.92242 0.92836 0.77152 0.88258 0.88260 0.88203 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.22 37.16 0.34 -1.33 16 2 C -0.12 -1.35 5.32 -26.73 -0.14 -1.49 16 3 C -0.10 -1.13 2.19 -90.62 -0.20 -1.33 16 4 C -0.12 -1.08 5.16 -26.73 -0.14 -1.22 16 5 C -0.15 -1.22 9.55 37.16 0.35 -0.86 16 6 C 0.14 1.98 4.09 -4.04 -0.02 1.97 16 7 N -0.74 -13.79 5.43 -60.39 -0.33 -14.12 16 8 C 0.44 10.15 7.65 -155.33 -1.19 8.96 16 9 C -0.37 -7.88 9.34 -38.87 -0.36 -8.24 16 10 C -0.02 -0.37 10.15 -39.39 -0.40 -0.77 16 11 C -0.31 -7.58 9.83 -38.65 -0.38 -7.96 16 12 C 0.29 7.81 6.40 -85.00 -0.54 7.26 16 13 C -0.48 -13.49 9.58 -37.74 -0.36 -13.85 16 14 H 0.08 2.28 8.05 -52.49 -0.42 1.86 16 15 C 0.04 1.25 5.52 -17.35 -0.10 1.15 16 16 N -0.81 -22.73 13.65 55.55 0.76 -21.97 16 17 Si 1.16 29.38 25.53 -169.99 -4.34 25.04 16 18 H -0.34 -8.46 7.11 56.52 0.40 -8.06 16 19 H -0.28 -7.05 6.69 56.52 0.38 -6.67 16 20 H -0.29 -7.53 7.10 56.52 0.40 -7.12 16 21 N -0.62 -16.25 4.55 -10.33 -0.05 -16.30 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.75 6.32 -51.93 -0.33 0.43 16 24 H 0.05 0.51 6.33 -51.93 -0.33 0.18 16 25 H 0.06 0.61 6.77 -51.93 -0.35 0.26 16 26 H 0.07 0.85 7.14 -51.93 -0.37 0.48 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.61 6.13 -51.93 -0.32 0.29 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.44 6.87 -51.93 -0.36 0.09 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.84 5.98 -51.93 -0.31 0.53 16 34 H 0.05 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.39 7.27 7.77 -40.82 -0.32 6.95 16 36 H 0.10 1.87 6.68 -52.49 -0.35 1.52 16 37 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.28 7.56 8.72 -40.82 -0.36 7.20 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -29.74 305.57 -8.48 -38.22 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.00 Total: 2.23 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -3.13 Total: -17.71 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.38 Total: -52.39 kcal Atomic # 14 Polarization: 29.38 SS G_CDS: -4.34 Total: 25.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.74 -8.48 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390625629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.006 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds