Wall clock time and date at job start Mon Mar 30 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47115 * 2 1 4 4 C 1.53004 * 109.47135 * 301.62336 * 3 2 1 5 5 C 1.53003 * 109.47124 * 294.64417 * 4 3 2 6 6 C 1.53000 * 109.47520 * 61.62367 * 3 2 1 7 7 N 1.46507 * 109.46828 * 65.00126 * 6 3 2 8 8 C 1.38814 * 119.99691 * 180.02562 * 7 6 3 9 9 C 1.39800 * 119.58667 * 359.97438 * 8 7 6 10 10 C 1.38597 * 119.49117 * 180.02562 * 9 8 7 11 11 C 1.38392 * 118.68104 * 0.02562 * 10 9 8 12 12 C 1.40558 * 119.14722 * 359.97438 * 11 10 9 13 13 C 1.41321 * 119.77985 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99932 * 6.25717 * 13 12 11 15 15 C 1.40026 * 119.99625 * 186.25415 * 13 12 11 16 16 N 1.30743 * 119.99809 * 182.62323 * 15 13 12 17 17 Si 1.86799 * 120.00156 * 2.34878 * 15 13 12 18 18 H 1.48491 * 109.47018 * 180.27342 * 17 15 13 19 19 H 1.48502 * 109.47222 * 300.27598 * 17 15 13 20 20 H 1.48504 * 109.46854 * 60.27178 * 17 15 13 21 21 N 1.31958 * 119.58385 * 180.29730 * 8 7 6 22 22 H 1.08998 * 109.47144 * 180.88063 * 1 2 3 23 23 H 1.08995 * 109.47304 * 300.87772 * 1 2 3 24 24 H 1.09004 * 109.46834 * 60.88003 * 1 2 3 25 25 H 1.09000 * 109.46993 * 239.99468 * 2 1 3 26 26 H 1.09003 * 109.46960 * 119.99505 * 2 1 3 27 27 H 1.09002 * 109.46864 * 181.62521 * 3 2 1 28 28 H 1.08998 * 109.47023 * 54.64096 * 4 3 2 29 29 H 1.08998 * 109.47209 * 174.64191 * 4 3 2 30 30 H 1.09002 * 109.46882 * 65.15488 * 5 4 3 31 31 H 1.08993 * 109.47070 * 185.15741 * 5 4 3 32 32 H 1.09000 * 109.46900 * 305.15756 * 5 4 3 33 33 H 1.08993 * 109.47245 * 305.00208 * 6 3 2 34 34 H 1.09001 * 109.47164 * 184.99422 * 6 3 2 35 35 H 0.96999 * 120.00063 * 359.97438 * 7 6 3 36 36 H 1.07999 * 120.25074 * 0.04909 * 9 8 7 37 37 H 1.08000 * 120.65735 * 179.97438 * 10 9 8 38 38 H 1.07996 * 120.42198 * 180.02562 * 11 10 9 39 39 H 0.97001 * 120.00004 * 354.62942 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4969 2.1754 -1.2283 5 6 2.0803 1.5480 -2.4960 6 6 1.5637 2.1519 1.2691 7 7 2.1795 1.5231 2.4404 8 6 1.8952 1.9985 3.7132 9 6 1.0205 3.0781 3.8674 10 6 0.7385 3.5516 5.1391 11 6 1.3367 2.9362 6.2247 12 6 2.2073 1.8549 6.0047 13 6 2.8251 1.2163 7.1037 14 1 2.5517 1.4914 8.1116 15 6 3.7917 0.2269 6.8856 16 7 4.3260 -0.4000 7.9010 17 14 4.3121 -0.2028 5.1438 18 1 5.3358 -1.2776 5.1840 19 1 3.1310 -0.6726 4.3759 20 1 4.8830 1.0004 4.4868 21 7 2.4590 1.4299 4.7621 22 1 -0.3633 -1.0275 0.0158 23 1 -0.3633 0.5274 0.8820 24 1 -0.3633 0.5001 -0.8978 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.1296 1.4425 -0.0291 28 1 0.4102 2.0934 -1.2494 29 1 1.7810 3.2266 -1.1793 30 1 1.7213 0.5233 -2.5925 31 1 1.7667 2.1262 -3.3650 32 1 3.1685 1.5474 -2.4334 33 1 0.4790 2.0744 1.3434 34 1 1.8510 3.2025 1.2277 35 1 2.7853 0.7741 2.3265 36 1 0.5677 3.5394 3.0021 37 1 0.0658 4.3847 5.2799 38 1 1.1366 3.2819 7.2281 39 1 4.1115 -0.1272 8.8068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390625629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:12 Heat of formation + Delta-G solvation = -20.466454 kcal Electronic energy + Delta-G solvation = -18153.778489 eV Core-core repulsion = 15479.899650 eV Total energy + Delta-G solvation = -2673.878839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66127 -39.00862 -36.24132 -35.10297 -32.94618 -32.05498 -31.21194 -28.58855 -27.19374 -25.30871 -24.08848 -23.59087 -21.99989 -20.41692 -19.89545 -18.21061 -17.21149 -16.79748 -16.32973 -16.05070 -15.77767 -15.44045 -15.05352 -14.69598 -14.28839 -14.16298 -13.85907 -13.62200 -13.53467 -13.41451 -12.75437 -12.63400 -12.41241 -12.33733 -12.17660 -11.98980 -11.59389 -11.52430 -11.33786 -11.28546 -11.19208 -10.73063 -10.28637 -9.63696 -9.18965 -8.53293 -6.79457 0.79744 1.03144 1.56390 1.72450 2.02462 2.46384 2.49932 2.71160 3.66959 3.79506 3.92556 3.98441 4.19110 4.40043 4.43101 4.53427 4.59188 4.64244 4.71666 4.73536 4.77068 4.82791 4.91323 4.94132 5.00723 5.09186 5.15847 5.31088 5.35142 5.38924 5.39959 5.46278 5.49342 5.64208 5.70716 5.86008 5.98146 6.20552 6.58600 6.61464 6.91808 7.74465 7.98131 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025871 B = 0.006373 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.019210 B = 4392.683399 C = 5092.551616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.114 4.114 5 C -0.150 4.150 6 C 0.135 3.865 7 N -0.733 5.733 8 C 0.423 3.577 9 C -0.347 4.347 10 C -0.008 4.008 11 C -0.333 4.333 12 C 0.272 3.728 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.016 3.984 16 N -0.835 5.835 17 Si 1.198 2.802 18 H -0.336 1.336 19 H -0.281 1.281 20 H -0.300 1.300 21 N -0.642 5.642 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 3.905 -19.800 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.113 4.113 4 C -0.151 4.151 5 C -0.207 4.207 6 C 0.012 3.988 7 N -0.367 5.367 8 C 0.186 3.814 9 C -0.373 4.373 10 C -0.032 4.032 11 C -0.356 4.356 12 C 0.147 3.853 13 C -0.548 4.548 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.459 5.459 17 Si 1.033 2.967 18 H -0.271 1.271 19 H -0.209 1.209 20 H -0.229 1.229 21 N -0.372 5.372 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.121 0.879 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.869 2.373 -20.746 21.441 hybrid contribution -1.170 1.372 2.131 2.792 sum -6.039 3.745 -18.614 19.924 Atomic orbital electron populations 1.21856 0.95483 1.01617 1.02056 1.21553 0.96720 0.95870 1.01715 1.21406 1.00694 0.95527 0.93643 1.21515 1.01344 0.99360 0.92918 1.21777 1.00833 1.01169 0.96961 1.21571 0.97679 0.96477 0.83116 1.44575 1.52258 1.37940 1.01934 1.18574 0.88818 0.88811 0.85238 1.20966 1.12477 1.05560 0.98273 1.21169 0.94225 0.96168 0.91615 1.21528 1.10489 1.04588 0.98954 1.18423 0.88925 0.89164 0.88804 1.20733 1.20566 1.20061 0.93485 0.91842 1.28519 0.91345 0.90560 1.09562 1.70670 1.38605 1.35304 1.01346 0.81177 0.73455 0.73703 0.68373 1.27063 1.20939 1.22920 1.65838 1.35508 1.36522 0.99380 0.93019 0.93739 0.90754 0.90282 0.93884 0.90905 0.90625 0.91452 0.92294 0.91870 0.92980 0.91563 0.92113 0.77227 0.84607 0.83976 0.87902 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.22 71.98 0.66 -2.21 16 2 C -0.12 -2.40 5.32 30.59 0.16 -2.24 16 3 C -0.09 -1.82 2.19 -10.79 -0.02 -1.84 16 4 C -0.11 -1.65 5.16 30.60 0.16 -1.49 16 5 C -0.15 -1.89 9.55 71.98 0.69 -1.21 16 6 C 0.14 3.37 4.09 86.38 0.35 3.73 16 7 N -0.73 -25.71 5.43 -344.98 -1.87 -27.59 16 8 C 0.42 18.55 7.65 133.42 1.02 19.57 16 9 C -0.35 -13.65 9.34 22.73 0.21 -13.44 16 10 C -0.01 -0.32 10.15 22.39 0.23 -0.09 16 11 C -0.33 -16.12 9.83 22.87 0.22 -15.89 16 12 C 0.27 14.94 6.40 40.18 0.26 15.20 16 13 C -0.52 -30.34 9.58 23.46 0.22 -30.12 16 14 H 0.06 3.80 8.05 -2.91 -0.02 3.78 16 15 C 0.02 0.93 5.52 85.29 0.47 1.40 16 16 N -0.84 -48.74 13.65 21.84 0.30 -48.44 16 17 Si 1.20 61.00 25.53 68.60 1.75 62.75 16 18 H -0.34 -16.72 7.11 99.48 0.71 -16.02 16 19 H -0.28 -14.00 6.69 99.48 0.67 -13.34 16 20 H -0.30 -15.30 7.10 99.48 0.71 -14.60 16 21 N -0.64 -33.32 4.55 -186.58 -0.85 -34.17 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 23 H 0.04 0.98 6.32 -2.39 -0.02 0.96 16 24 H 0.07 1.10 6.33 -2.38 -0.02 1.09 16 25 H 0.08 1.32 6.77 -2.39 -0.02 1.30 16 26 H 0.04 1.05 7.14 -2.39 -0.02 1.03 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.01 6.13 -2.39 -0.01 1.00 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.72 6.87 -2.39 -0.02 0.70 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.61 5.98 -2.39 -0.01 1.60 16 34 H 0.06 1.47 7.92 -2.39 -0.02 1.45 16 35 H 0.39 13.95 7.77 -92.71 -0.72 13.22 16 36 H 0.14 4.35 6.68 -2.91 -0.02 4.33 16 37 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.28 15.77 8.72 -92.71 -0.81 14.96 16 Total: -1.00 -64.91 305.57 4.20 -60.71 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.24 Total: 15.36 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 4.64 Total: -28.62 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -2.43 Total: -110.20 kcal Atomic # 14 Polarization: 61.00 SS G_CDS: 1.75 Total: 62.75 kcal Total: -64.91 4.20 -60.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390625629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.248 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds